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ONTOLOGY REPORT - ANNOTATIONS

Term:ribonucleoside diphosphate metabolic process
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Accession:GO:0009185 term browser browse the term
Definition:The chemical reactions and pathways involving a ribonucleoside diphosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with diphosphate on the sugar.
Synonyms:exact_synonym: ribonucleoside diphosphate metabolism


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ribonucleoside diphosphate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RRM1 ribonucleotide reductase catalytic subunit M1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:3,956,528...3,999,205
Ensembl chr11:4,068,119...4,110,474 		JBrowse link
G RRM2 ribonucleotide reductase regulatory subunit M2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:10,119,508...10,128,318
Ensembl chr2A:10,275,598...10,284,640 		JBrowse link
G RRM2B ribonucleotide reductase regulatory TP53 inducible subunit M2B involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:98,854,101...98,890,365
Ensembl chr 8:101,019,699...101,052,056 		JBrowse link
ADP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AK1 adenylate kinase 1 involved_in ISO
IEA		 RGD
UniProt		 PMID:19049516 GO_REF:0000104 RGD:5134369 NCBI chr 9:98,987,348...98,997,252
Ensembl chr 9:127,657,338...127,678,245 		JBrowse link
G AK2 adenylate kinase 2 involved_in ISO
IEA		 RGD
InterPro
UniProt		 PMID:5123889 GO_REF:0000002 GO_REF:0000104 RGD:5490208 NCBI chr 1:32,295,668...32,323,681
Ensembl chr 1:33,480,947...33,508,621 		JBrowse link
G AK3 adenylate kinase 3 ISO RGD PMID:5010295 PMID:5123889 RGD:5490208 RGD:5490216 NCBI chr 9:4,541,984...4,576,341
Ensembl chr 9:4,732,847...4,762,900 		JBrowse link
G AK4 adenylate kinase 4 involved_in IEA UniProt GO_REF:0000104 NCBI chr 1:64,394,898...64,479,536
Ensembl chr 1:66,283,102...66,361,230 		JBrowse link
ADP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMPD3 adenosine monophosphate deaminase 3 involved_in ISO (MGI:5917829|PMID:28746349) MGI PMID:28746349 MGI:5917829 NCBI chr11:10,581,730...10,638,777
Ensembl chr11:10,309,436...10,365,369 		JBrowse link
G ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 involved_in ISO (MGI:3760051|PMID:17502665) MGI PMID:17502665 MGI:3760051 NCBI chr10:92,365,267...92,511,852
Ensembl chr10:95,828,094...95,983,257 		JBrowse link
G NT5E 5'-nucleotidase ecto involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:83,333,428...83,379,585
Ensembl chr 6:86,615,409...86,661,601 		JBrowse link
G NUDT9 nudix hydrolase 9 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2158549|PMID:11825615) MGI
Ensembl		 PMID:11825615 GO_REF:0000107 MGI:2158549 NCBI chr 4:79,718,294...79,755,238
Ensembl chr 4:90,444,772...90,480,786 		JBrowse link
ADP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMPD3 adenosine monophosphate deaminase 3 acts_upstream_of_or_within
involved_in		 ISO (MGI:5476853|PMID:23439682)
(MGI:5529149|PMID:23078545)		 MGI
CACAO		 PMID:23078545 PMID:23439682 MGI:5476853 MGI:5529149 NCBI chr11:10,581,730...10,638,777
Ensembl chr11:10,309,436...10,365,369 		JBrowse link
G BAD BCL2 associated agonist of cell death involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:59,626,981...59,641,824
Ensembl chr11:62,971,808...62,986,257 		JBrowse link
CDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CMPK1 cytidine/uridine monophosphate kinase 1 ISO RGD PMID:3010881 RGD:5133253 NCBI chr 1:46,642,602...46,673,568 JBrowse link
GDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GUK1 guanylate kinase 1 ISO RGD PMID:4307347 RGD:5147877 NCBI chr 1:203,541,866...203,550,827
Ensembl chr 1:208,753,657...208,765,857 		JBrowse link
GDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENTPD4 ectonucleoside triphosphate diphosphohydrolase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:22,678,746...22,707,408
Ensembl chr 8:19,571,337...19,635,150 		JBrowse link
G NUDT18 nudix hydrolase 18 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:21,351,840...21,356,915
Ensembl chr 8:18,293,555...18,297,078 		JBrowse link
GDP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GUK1 guanylate kinase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:81565|PMID:8663313) GOC
GOC		 PMID:8663313 GO_REF:0000108 MGI:81565 NCBI chr 1:203,541,866...203,550,827
Ensembl chr 1:208,753,657...208,765,857 		JBrowse link
IDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NUDT9 nudix hydrolase 9 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2158549|PMID:11825615) MGI
Ensembl		 PMID:11825615 GO_REF:0000107 MGI:2158549 NCBI chr 4:79,718,294...79,755,238
Ensembl chr 4:90,444,772...90,480,786 		JBrowse link
purine ribonucleoside diphosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 acts_upstream_of_or_within ISO (MGI:2178511|PMID:11929769) MGI PMID:11929769 MGI:2178511 NCBI chr10:92,365,267...92,511,852
Ensembl chr10:95,828,094...95,983,257 		JBrowse link
G ENTPD2 ectonucleoside triphosphate diphosphohydrolase 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2178511|PMID:11929769) MGI
Ensembl		 PMID:11929769 GO_REF:0000107 MGI:2178511 NCBI chr 9:108,108,780...108,114,806
Ensembl chr 9:137,077,207...137,083,031 		JBrowse link
ribonucleoside diphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AK4 adenylate kinase 4 involved_in ISO (PMID:24767988) UniProt PMID:24767988 NCBI chr 1:64,394,898...64,479,536
Ensembl chr 1:66,283,102...66,361,230 		JBrowse link
G AK9 adenylate kinase 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:107,296,088...107,495,623
Ensembl chr 6:111,344,834...111,539,932 		JBrowse link
ribonucleoside diphosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NUDT5 nudix hydrolase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:12,177,922...12,206,435
Ensembl chr10:12,158,106...12,176,533 		JBrowse link
UDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CAD carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:27,218,699...27,245,156
Ensembl chr2A:27,306,527...27,332,804 		JBrowse link
G CMPK1 cytidine/uridine monophosphate kinase 1 involved_in ISO (PMID:11912132) RGD
MGI		 PMID:3010881 PMID:11912132 RGD:5133253 NCBI chr 1:46,642,602...46,673,568 JBrowse link
G DHODH dihydroorotate dehydrogenase (quinone) involved_in ISO (MGI:6282496|PMID:30449682), (MGI:6720231|PMID:6249586) MGI PMID:6249586 PMID:30449682 MGI:6282496 MGI:6720231 NCBI chr16:52,977,879...52,994,496
Ensembl chr16:71,854,238...71,870,673 		JBrowse link
G UMPS uridine monophosphate synthetase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:121,832,758...121,851,707
Ensembl chr 3:128,731,355...128,745,029 		JBrowse link
UDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENTPD4 ectonucleoside triphosphate diphosphohydrolase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:22,678,746...22,707,408
Ensembl chr 8:19,571,337...19,635,150 		JBrowse link
G ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 (inactive) involved_in ISO (MGI:1927266|PMID:10369669), (MGI:4881347|PMID:21074248) UniProt PMID:10369669 PMID:21074248 MGI:1927266 MGI:4881347 NCBI chr14:54,522,428...54,578,501
Ensembl chr14:73,376,684...73,410,468 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15412
    metabolic process 10019
      organic substance metabolic process 9643
        organophosphate metabolic process 808
          nucleoside phosphate metabolic process 420
            nucleoside diphosphate metabolic process 28
              ribonucleoside diphosphate metabolic process 23
                purine ribonucleoside diphosphate metabolic process + 13
                pyrimidine ribonucleoside diphosphate metabolic process + 6
                ribonucleoside diphosphate biosynthetic process + 10
                ribonucleoside diphosphate catabolic process + 9
Path 2
Term Annotations click to browse term
  biological_process 15412
    metabolic process 10019
      nitrogen compound metabolic process 6717
        cellular nitrogen compound metabolic process 3025
          nucleobase-containing compound metabolic process 2309
            nucleobase-containing small molecule metabolic process 477
              nucleoside phosphate metabolic process 420
                nucleoside diphosphate metabolic process 28
                  ribonucleoside diphosphate metabolic process 23
                    purine ribonucleoside diphosphate metabolic process + 13
                    pyrimidine ribonucleoside diphosphate metabolic process + 6
                    ribonucleoside diphosphate biosynthetic process + 10
                    ribonucleoside diphosphate catabolic process + 9
paths to the root