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ONTOLOGY REPORT - ANNOTATIONS


Term:pyrimidine deoxyribonucleoside monophosphate biosynthetic process
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Accession:GO:0009177 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of pyrimidine deoxynucleoside monophosphate, a compound consisting of a pyrimidine base linked to a deoxyribose sugar esterified with phosphate on the sugar.
Synonyms:exact_synonym: pyrimidine deoxyribonucleoside monophosphate anabolism;   pyrimidine deoxyribonucleoside monophosphate biosynthesis;   pyrimidine deoxyribonucleoside monophosphate formation;   pyrimidine deoxyribonucleoside monophosphate synthesis


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dTMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctd dCMP deaminase involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr16:47,177,144...47,222,850
Ensembl chr16:47,177,145...47,208,110
JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 ISO (MGI:3849912|PMID:19513116) RGD PMID:19513116 MGI:3849912 NCBI chr10:47,030,813...47,059,216
Ensembl chr10:47,031,050...47,059,216
JBrowse link
G Tyms thymidylate synthetase involved_in IDA
IBA
ISO
PMID:21873635
(PMID:11278511), (PMID:15093541), (PMID:8845352)
RGD PMID:8845352 PMID:11278511 PMID:15093541, PMID:9894005, PMID:21873635, PMID:21873635 RGD:1545055, RGD:13792537, RGD:13792537 NCBI chr 9:121,918,875...121,931,564
Ensembl chr 9:121,918,947...121,931,564
JBrowse link
dUMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07001512.1 involved_in IEA
IBA
GO_REF:0000041
PMID:21873635
UniProt PMID:21873635, PMID:21873635 GO_REF:0000041, RGD:13792537, RGD:13792537 Ensembl chr 1:48,565,160...48,565,711 JBrowse link
G Dctd dCMP deaminase involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr16:47,177,144...47,222,850
Ensembl chr16:47,177,145...47,208,110
JBrowse link
G Dut deoxyuridine triphosphatase involved_in IDA
IEA
IBA
GO_REF:0000041
PMID:21873635
UniProt PMID:3032103, PMID:21873635, PMID:21873635, PMID:1315924 GO_REF:0000041, RGD:2300191, RGD:13792537, RGD:13792537, RGD:2301218 NCBI chr 3:117,514,399...117,525,450
Ensembl chr 3:117,514,444...117,525,446
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20078
    metabolic process 12140
      organic substance metabolic process 11646
        organophosphate metabolic process 956
          nucleoside phosphate metabolic process 526
            nucleoside monophosphate metabolic process 86
              nucleoside monophosphate biosynthetic process 50
                pyrimidine nucleoside monophosphate biosynthetic process 14
                  pyrimidine deoxyribonucleoside monophosphate biosynthetic process 5
                    dCMP biosynthetic process + 0
                    dTMP biosynthetic process + 3
                    dUMP biosynthetic process 3
Path 2
Term Annotations click to browse term
  biological_process 20078
    metabolic process 12140
      cellular metabolic process 11076
        cellular aromatic compound metabolic process 5725
          nucleobase-containing compound metabolic process 5512
            nucleobase-containing small molecule metabolic process 598
              nucleoside phosphate metabolic process 526
                nucleoside monophosphate metabolic process 86
                  nucleoside monophosphate biosynthetic process 50
                    pyrimidine nucleoside monophosphate biosynthetic process 14
                      pyrimidine deoxyribonucleoside monophosphate biosynthetic process 5
                        dCMP biosynthetic process + 0
                        dTMP biosynthetic process + 3
                        dUMP biosynthetic process 3
paths to the root