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ONTOLOGY REPORT - ANNOTATIONS

Term:pyrimidine deoxyribonucleoside monophosphate biosynthetic process
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Accession:GO:0009177 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of pyrimidine deoxynucleoside monophosphate, a compound consisting of a pyrimidine base linked to a deoxyribose sugar esterified with phosphate on the sugar.
Synonyms:exact_synonym: pyrimidine deoxyribonucleoside monophosphate anabolism;   pyrimidine deoxyribonucleoside monophosphate biosynthesis;   pyrimidine deoxyribonucleoside monophosphate formation;   pyrimidine deoxyribonucleoside monophosphate synthesis


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dTMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctd dCMP deaminase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:50,799,699...50,831,398
Ensembl chr16:44,055,128...44,098,446 		JBrowse link
G Dut deoxyuridine triphosphatase involved_in ISO (PMID:10952785), (PMID:15322254) RGD PMID:10952785 PMID:15322254 NCBI chr 3:112,498,864...112,509,994
Ensembl chr 3:112,498,982...112,510,771 		JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 involved_in ISO (PMID:19513116) RGD PMID:19513116 NCBI chr10:45,968,959...45,990,341
Ensembl chr10:45,468,700...45,497,820 		JBrowse link
G Tyms thymidylate synthetase involved_in IDA
ISO
IEA
IBA		 (PMID:11278511), (PMID:15093541), (PMID:8845352)
GO_REF:0000002
GO_REF:0000033
(PMID:22057276)		 RGD
InterPro
GO_Central		 PMID:8845352 PMID:11278511 PMID:15093541 PMID:22057276 PMID:9894005 GO_REF:0000002 GO_REF:0000033, RGD:1545055 NCBI chr 9:120,760,057...120,776,149
Ensembl chr 9:113,313,452...113,329,536 		JBrowse link
dUMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07001512.1 involved_in IEA
IBA		 GO_REF:0000041
GO_REF:0000033		 UniProt
GO_Central		 GO_REF:0000033 GO_REF:0000041 Ensembl chr 1:48,369,044...48,369,595 JBrowse link
G Dctd dCMP deaminase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:50,799,699...50,831,398
Ensembl chr16:44,055,128...44,098,446 		JBrowse link
G Dut deoxyuridine triphosphatase involved_in IDA
IBA
IEA		 GO_REF:0000033
GO_REF:0000041		 GO_Central
UniProt
RGD		 PMID:3032103 PMID:1315924 GO_REF:0000033 GO_REF:0000041, RGD:2300191, RGD:2301218 NCBI chr 3:112,498,864...112,509,994
Ensembl chr 3:112,498,982...112,510,771 		JBrowse link
G ENSRNOG00000069939 involved_in IEA
IBA		 GO_REF:0000041
GO_REF:0000033		 UniProt
GO_Central		 GO_REF:0000033 GO_REF:0000041 Ensembl chr13:67,763,505...67,765,634 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20553
    cellular process 19543
      metabolic process 12181
        biosynthetic process 8648
          nucleobase-containing compound biosynthetic process 4862
            nucleoside phosphate biosynthetic process 307
              nucleoside monophosphate biosynthetic process 52
                pyrimidine nucleoside monophosphate biosynthetic process 17
                  pyrimidine deoxyribonucleoside monophosphate biosynthetic process 6
                    dCMP biosynthetic process + 0
                    dTMP biosynthetic process + 4
                    dUMP biosynthetic process 4
Path 2
Term Annotations click to browse term
  biological_process 20553
    cellular process 19543
      metabolic process 12181
        primary metabolic process 10757
          nucleobase-containing compound metabolic process 5951
            nucleobase-containing small molecule metabolic process 732
              nucleoside phosphate metabolic process 697
                nucleoside monophosphate metabolic process 90
                  deoxyribonucleoside monophosphate metabolic process 33
                    deoxyribonucleoside monophosphate biosynthetic process 14
                      pyrimidine deoxyribonucleoside monophosphate biosynthetic process 6
                        dCMP biosynthetic process + 0
                        dTMP biosynthetic process + 4
                        dUMP biosynthetic process 4
paths to the root