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ONTOLOGY REPORT - ANNOTATIONS


Term:pyrimidine deoxyribonucleoside monophosphate metabolic process
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Accession:GO:0009176 term browser browse the term
Definition:The chemical reactions and pathways involving pyrimidine deoxynucleoside monophosphate, a compound consisting of a pyrimidine base linked to a deoxyribose sugar esterified with phosphate on the sugar.
Synonyms:exact_synonym: pyrimidine deoxyribonucleoside monophosphate metabolism



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dCMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DPYD dihydropyrimidine dehydrogenase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:99,736,145...100,576,663
Ensembl chr 1:98,457,934...99,300,100
JBrowse link
G DPYS dihydropyrimidinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:101,008,090...101,096,234
Ensembl chr 8:103,160,922...103,248,303
JBrowse link
G LOC100995749 uridine phosphorylase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:45,363,103...45,400,281
Ensembl chr2B:162,496,507...162,636,231
JBrowse link
G NT5C 5', 3'-nucleotidase, cytosolic involved_in ISO (MGI:55510|PMID:6301357) MGI PMID:6301357 MGI:55510 NCBI chr17:69,077,021...69,078,998 JBrowse link
G UPB1 beta-ureidopropionase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:5,300,686...5,332,735
Ensembl chr22:22,166,370...22,197,360
JBrowse link
G UPP1 uridine phosphorylase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:48,729,975...48,749,598
Ensembl chr 7:48,838,893...48,858,185
JBrowse link
dTMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DUT deoxyuridine triphosphatase involved_in IEA Ensembl GO_REF:0000107 NCBI chr15:27,280,025...27,292,003
Ensembl chr15:45,603,807...45,616,022
JBrowse link
G SHMT1 serine hydroxymethyltransferase 1 involved_in ISO (MGI:3849912|PMID:19513116) BHF-UCL PMID:19513116 MGI:3849912 NCBI chr17:32,870,949...32,905,690
Ensembl chr17:37,849,206...37,884,220
JBrowse link
G TYMS thymidylate synthetase involved_in ISO
IEA
RGD
TreeGrafter
InterPro
Ensembl
PMID:9894005 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 RGD:1545055 NCBI chr18:13,653,085...13,668,478
Ensembl chr18:17,295,182...17,310,320
JBrowse link
dTMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NT5C 5', 3'-nucleotidase, cytosolic involved_in ISO (MGI:55510|PMID:6301357) MGI PMID:6301357 MGI:55510 NCBI chr17:69,077,021...69,078,998 JBrowse link
G TYMP thymidine phosphorylase involved_in ISO (MGI:2183137|PMID:12077348) MGI PMID:12077348 MGI:2183137 NCBI chr22:30,772,088...30,776,618 JBrowse link
G UPP1 uridine phosphorylase 1 involved_in
NOT|involved_in
IEA
ISO
(MGI:3584214|PMID:15772079) Ensembl
UniProt
PMID:15772079 GO_REF:0000107 MGI:3584214 NCBI chr 7:48,729,975...48,749,598
Ensembl chr 7:48,838,893...48,858,185
JBrowse link
dUMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DUT deoxyuridine triphosphatase involved_in ISO
IEA
RGD
TreeGrafter
UniProt
InterPro
PMID:1315924 PMID:3032103 GO_REF:0000002 GO_REF:0000041 GO_REF:0000104 GO_REF:0000118 RGD:2300191 RGD:2301218 NCBI chr15:27,280,025...27,292,003
Ensembl chr15:45,603,807...45,616,022
JBrowse link
dUMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DPYD dihydropyrimidine dehydrogenase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:99,736,145...100,576,663
Ensembl chr 1:98,457,934...99,300,100
JBrowse link
G DPYS dihydropyrimidinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:101,008,090...101,096,234
Ensembl chr 8:103,160,922...103,248,303
JBrowse link
G NT5C 5', 3'-nucleotidase, cytosolic involved_in ISO (MGI:1353788|PMID:10681516) MGI PMID:10681516 MGI:1353788 NCBI chr17:69,077,021...69,078,998 JBrowse link
G NT5M 5',3'-nucleotidase, mitochondrial acts_upstream_of_or_within ISO (MGI:2388903|PMID:12234672) MGI PMID:12234672 MGI:2388903 NCBI chr17:33,948,270...33,991,485 JBrowse link
G UPB1 beta-ureidopropionase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:5,300,686...5,332,735
Ensembl chr22:22,166,370...22,197,360
JBrowse link
G UPP1 uridine phosphorylase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:48,729,975...48,749,598
Ensembl chr 7:48,838,893...48,858,185
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16309
    metabolic process 10175
      small molecule metabolic process 1651
        nucleobase-containing small molecule metabolic process 599
          nucleoside phosphate metabolic process 537
            nucleoside monophosphate metabolic process 72
              pyrimidine nucleoside monophosphate metabolic process 20
                pyrimidine deoxyribonucleoside monophosphate metabolic process 11
                  dCMP metabolic process + 6
                  dTMP metabolic process + 6
                  dUMP metabolic process + 7
                  pyrimidine deoxyribonucleoside monophosphate biosynthetic process + 3
                  pyrimidine deoxyribonucleoside monophosphate catabolic process + 8
Path 2
Term Annotations click to browse term
  biological_process 16309
    metabolic process 10175
      cellular metabolic process 8946
        cellular nitrogen compound metabolic process 5669
          nucleobase-containing compound metabolic process 5004
            nucleobase-containing small molecule metabolic process 599
              nucleoside phosphate metabolic process 537
                nucleoside monophosphate metabolic process 72
                  deoxyribonucleoside monophosphate metabolic process 25
                    pyrimidine deoxyribonucleoside monophosphate metabolic process 11
                      dCMP metabolic process + 6
                      dTMP metabolic process + 6
                      dUMP metabolic process + 7
                      pyrimidine deoxyribonucleoside monophosphate biosynthetic process + 3
                      pyrimidine deoxyribonucleoside monophosphate catabolic process + 8
paths to the root