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ONTOLOGY REPORT - ANNOTATIONS


Term:pyrimidine deoxyribonucleoside monophosphate metabolic process
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Accession:GO:0009176 term browser browse the term
Definition:The chemical reactions and pathways involving pyrimidine deoxynucleoside monophosphate, a compound consisting of a pyrimidine base linked to a deoxyribose sugar esterified with phosphate on the sugar.
Synonyms:exact_synonym: pyrimidine deoxyribonucleoside monophosphate metabolism



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dCMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase involved_in ISO
IEA
(MGI:53656|PMID:5472365)
GO_REF:0000107
RGD
Ensembl
PMID:5472365 GO_REF:0000107 MGI:53656 NCBI chr 2:206,609,043...207,474,982
Ensembl chr 2:206,609,122...207,474,982
JBrowse link
G Dpys dihydropyrimidinase involved_in ISO (MGI:53656|PMID:5472365) RGD PMID:5472365 MGI:53656 NCBI chr 7:70,822,648...70,929,255
Ensembl chr 7:70,835,789...70,929,231
JBrowse link
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in ISO (MGI:55510|PMID:6301357) RGD PMID:6301357 MGI:55510 NCBI chr10:100,739,591...100,742,276
Ensembl chr10:100,739,588...100,741,954
JBrowse link
G Upb1 beta-ureidopropionase 1 involved_in ISO (MGI:53656|PMID:5472365) RGD PMID:5472365 MGI:53656 NCBI chr20:13,217,252...13,243,590
Ensembl chr20:13,217,258...13,243,590
JBrowse link
G Upp1 uridine phosphorylase 1 involved_in ISO (MGI:73237|PMID:7744869) RGD PMID:7744869 MGI:73237 NCBI chr14:83,809,495...83,829,299
Ensembl chr14:83,809,960...83,829,462
JBrowse link
G Upp2 uridine phosphorylase 2 involved_in ISO (PMID:12849978) RGD PMID:12849978 NCBI chr 3:43,273,048...43,317,417
Ensembl chr 3:43,273,048...43,317,417
JBrowse link
dTMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctd dCMP deaminase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:44,066,952...44,098,654
Ensembl chr16:44,055,128...44,098,446
JBrowse link
G Dut deoxyuridine triphosphatase involved_in ISO (PMID:10952785), (PMID:15322254) RGD PMID:10952785 PMID:15322254 NCBI chr 3:112,498,864...112,509,994
Ensembl chr 3:112,498,982...112,510,771
JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 involved_in ISO (MGI:3849912|PMID:19513116) RGD PMID:19513116 MGI:3849912 NCBI chr10:45,468,698...45,497,820
Ensembl chr10:45,468,700...45,497,820
JBrowse link
G Tyms thymidylate synthetase involved_in IDA
IBA
ISO
PMID:21873635
(MGI:5300404|PMID:22057276)
(PMID:11278511), (PMID:15093541), (PMID:8845352)
RGD PMID:8845352 PMID:11278511 PMID:15093541 PMID:22057276 PMID:9894005 More... MGI:5300404, RGD:1545055, RGD:13792537 NCBI chr 9:113,313,454...113,329,551
Ensembl chr 9:113,313,452...113,329,536
JBrowse link
dTMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in ISO (MGI:55510|PMID:6301357) RGD PMID:6301357 MGI:55510 NCBI chr10:100,739,591...100,742,276
Ensembl chr10:100,739,588...100,741,954
JBrowse link
G Tymp thymidine phosphorylase involved_in ISO MGI:2183547 (MGI:2183137|PMID:12077348) RGD PMID:12077348 MGI:2183137 NCBI chr 7:120,438,768...120,444,088
Ensembl chr 7:120,438,125...120,447,429
Ensembl chr 7:120,438,125...120,447,429
JBrowse link
G Upp1 uridine phosphorylase 1 involved_in ISO MGI:3699164 (MGI:2183137|PMID:12077348) RGD PMID:12077348 MGI:2183137 NCBI chr14:83,809,495...83,829,299
Ensembl chr14:83,809,960...83,829,462
JBrowse link
dUMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07001512.1 involved_in IBA
IEA
PMID:21873635
GO_REF:0000041
UniProt PMID:21873635 GO_REF:0000041, RGD:13792537 Ensembl chr 1:48,369,044...48,369,595 JBrowse link
G Dctd dCMP deaminase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:44,066,952...44,098,654
Ensembl chr16:44,055,128...44,098,446
JBrowse link
G Dut deoxyuridine triphosphatase involved_in IDA
IEA
IBA
GO_REF:0000041
PMID:21873635
UniProt
RGD
PMID:3032103 PMID:21873635 PMID:1315924 GO_REF:0000041, RGD:2300191, RGD:13792537, RGD:2301218 NCBI chr 3:112,498,864...112,509,994
Ensembl chr 3:112,498,982...112,510,771
JBrowse link
dUMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase involved_in ISO
IEA
(MGI:53656|PMID:5472365)
GO_REF:0000107
RGD
Ensembl
PMID:5472365 GO_REF:0000107 MGI:53656 NCBI chr 2:206,609,043...207,474,982
Ensembl chr 2:206,609,122...207,474,982
JBrowse link
G Dpys dihydropyrimidinase involved_in ISO (MGI:53656|PMID:5472365) RGD PMID:5472365 MGI:53656 NCBI chr 7:70,822,648...70,929,255
Ensembl chr 7:70,835,789...70,929,231
JBrowse link
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in ISO (MGI:1353788|PMID:10681516) RGD PMID:10681516 MGI:1353788 NCBI chr10:100,739,591...100,742,276
Ensembl chr10:100,739,588...100,741,954
JBrowse link
G Nt5m 5',3'-nucleotidase, mitochondrial acts_upstream_of_or_within ISO (MGI:2388903|PMID:12234672) RGD PMID:12234672 MGI:2388903 NCBI chr10:44,652,845...44,680,549
Ensembl chr10:44,652,975...44,679,150
JBrowse link
G Upb1 beta-ureidopropionase 1 involved_in ISO (MGI:53656|PMID:5472365) RGD PMID:5472365 MGI:53656 NCBI chr20:13,217,252...13,243,590
Ensembl chr20:13,217,258...13,243,590
JBrowse link
G Upp1 uridine phosphorylase 1 involved_in ISO (MGI:6478539|PMID:14154460) RGD PMID:14154460 MGI:6478539 NCBI chr14:83,809,495...83,829,299
Ensembl chr14:83,809,960...83,829,462
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19512
    metabolic process 11791
      small molecule metabolic process 1805
        nucleobase-containing small molecule metabolic process 576
          nucleoside phosphate metabolic process 508
            nucleoside monophosphate metabolic process 81
              pyrimidine nucleoside monophosphate metabolic process 22
                pyrimidine deoxyribonucleoside monophosphate metabolic process 13
                  dCMP metabolic process + 6
                  dTMP metabolic process + 7
                  dUMP metabolic process + 9
                  pyrimidine deoxyribonucleoside monophosphate biosynthetic process + 5
                  pyrimidine deoxyribonucleoside monophosphate catabolic process + 8
Path 2
Term Annotations click to browse term
  biological_process 19512
    metabolic process 11791
      cellular metabolic process 10675
        cellular nitrogen compound metabolic process 6562
          nucleobase-containing compound metabolic process 5452
            nucleobase-containing small molecule metabolic process 576
              nucleoside phosphate metabolic process 508
                nucleoside monophosphate metabolic process 81
                  deoxyribonucleoside monophosphate metabolic process 28
                    pyrimidine deoxyribonucleoside monophosphate metabolic process 13
                      dCMP metabolic process + 6
                      dTMP metabolic process + 7
                      dUMP metabolic process + 9
                      pyrimidine deoxyribonucleoside monophosphate biosynthetic process + 5
                      pyrimidine deoxyribonucleoside monophosphate catabolic process + 8
paths to the root