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ONTOLOGY REPORT - ANNOTATIONS


Term:pyrimidine deoxyribonucleoside monophosphate metabolic process
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Accession:GO:0009176 term browser browse the term
Definition:The chemical reactions and pathways involving pyrimidine deoxynucleoside monophosphate, a compound consisting of a pyrimidine base linked to a deoxyribose sugar esterified with phosphate on the sugar.
Synonyms:exact_synonym: pyrimidine deoxyribonucleoside monophosphate metabolism


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dCMP catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase ISO (MGI:53656|PMID:5472365) RGD PMID:5472365 MGI:53656 NCBI chr 2:221,823,692...222,694,627
Ensembl chr 2:221,823,687...222,694,627
JBrowse link
G Dpys dihydropyrimidinase ISO (MGI:53656|PMID:5472365) RGD PMID:5472365 MGI:53656 NCBI chr 7:78,769,918...78,847,941
Ensembl chr 7:78,769,807...78,847,974
JBrowse link
G Nt5c 5', 3'-nucleotidase, cytosolic ISO (MGI:55510|PMID:6301357) RGD PMID:6301357 MGI:55510 NCBI chr10:104,052,807...104,054,805
Ensembl chr10:104,052,831...104,054,805
JBrowse link
G Ubp1 upstream binding protein 1 ISO (MGI:53656|PMID:5472365) RGD PMID:5472365 MGI:53656 NCBI chr 8:122,196,576...122,241,368
Ensembl chr 8:122,197,027...122,240,357
JBrowse link
G Upp1 uridine phosphorylase 1 ISO (MGI:73237|PMID:7744869) RGD PMID:7744869 MGI:73237 NCBI chr14:89,314,234...89,334,060
Ensembl chr14:89,314,176...89,334,276
JBrowse link
dTMP biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctd dCMP deaminase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:47,177,144...47,222,850
Ensembl chr16:47,177,145...47,208,110
JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 ISO (MGI:3849912|PMID:19513116) RGD PMID:19513116 MGI:3849912 NCBI chr10:47,030,813...47,059,216
Ensembl chr10:47,031,050...47,059,216
JBrowse link
G Tyms thymidylate synthetase IDA
IBA
ISO
PMID:21873635
(PMID:11278511), (PMID:15093541), (PMID:8845352)
RGD PMID:8845352 PMID:11278511 PMID:15093541, PMID:9894005, PMID:21873635 RGD:1545055, RGD:13792537 NCBI chr 9:121,918,875...121,931,564
Ensembl chr 9:121,918,947...121,931,564
JBrowse link
dTMP catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5c 5', 3'-nucleotidase, cytosolic ISO
IEA
(MGI:55510|PMID:6301357)
GO_REF:0000107
RGD
Ensembl
PMID:6301357 GO_REF:0000107 MGI:55510 NCBI chr10:104,052,807...104,054,805
Ensembl chr10:104,052,831...104,054,805
JBrowse link
G Tymp thymidine phosphorylase ISO
IEA
MGI:2183547 (MGI:2183137|PMID:12077348)
GO_REF:0000107
RGD
Ensembl
PMID:12077348 GO_REF:0000107 MGI:2183137 NCBI chr 7:130,342,481...130,347,845
Ensembl chr 7:130,342,483...130,347,587
JBrowse link
G Upp1 uridine phosphorylase 1 ISO
IEA
MGI:3699164 (MGI:2183137|PMID:12077348)
GO_REF:0000107
RGD
Ensembl
PMID:12077348 GO_REF:0000107 MGI:2183137 NCBI chr14:89,314,234...89,334,060
Ensembl chr14:89,314,176...89,334,276
JBrowse link
dUMP biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07001512.1 IEA
IBA
GO_REF:0000041
PMID:21873635
UniProt PMID:21873635 GO_REF:0000041, RGD:13792537 Ensembl chr 1:48,565,160...48,565,711 JBrowse link
G Dctd dCMP deaminase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:47,177,144...47,222,850
Ensembl chr16:47,177,145...47,208,110
JBrowse link
G Dut deoxyuridine triphosphatase IDA
IBA
IEA
PMID:21873635
GO_REF:0000041
UniProt PMID:3032103, PMID:21873635, PMID:1315924 GO_REF:0000041, RGD:2300191, RGD:13792537, RGD:2301218 NCBI chr 3:117,514,399...117,525,450
Ensembl chr 3:117,514,444...117,525,446
JBrowse link
dUMP catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase ISO
IEA
(MGI:53656|PMID:5472365)
GO_REF:0000107
RGD
Ensembl
PMID:5472365 GO_REF:0000107 MGI:53656 NCBI chr 2:221,823,692...222,694,627
Ensembl chr 2:221,823,687...222,694,627
JBrowse link
G Dpys dihydropyrimidinase ISO
IEA
(MGI:53656|PMID:5472365)
GO_REF:0000107
RGD
Ensembl
PMID:5472365 GO_REF:0000107 MGI:53656 NCBI chr 7:78,769,918...78,847,941
Ensembl chr 7:78,769,807...78,847,974
JBrowse link
G Nt5c 5', 3'-nucleotidase, cytosolic ISO
IEA
(MGI:1353788|PMID:10681516)
GO_REF:0000107
RGD
Ensembl
PMID:10681516 GO_REF:0000107 MGI:1353788 NCBI chr10:104,052,807...104,054,805
Ensembl chr10:104,052,831...104,054,805
JBrowse link
G Nt5m 5',3'-nucleotidase, mitochondrial ISO (MGI:2388903|PMID:12234672) RGD PMID:12234672 MGI:2388903 NCBI chr10:46,216,494...46,244,478
Ensembl chr10:46,216,884...46,243,077
JBrowse link
G Upb1 beta-ureidopropionase 1 ISO
IEA
(MGI:53656|PMID:5472365)
GO_REF:0000107
RGD
Ensembl
PMID:5472365 GO_REF:0000107 MGI:53656 NCBI chr20:14,167,383...14,193,724
Ensembl chr20:14,167,586...14,193,690
JBrowse link
G Upp1 uridine phosphorylase 1 ISO (MGI:6478539|PMID:14154460) RGD PMID:14154460 MGI:6478539 NCBI chr14:89,314,234...89,334,060
Ensembl chr14:89,314,176...89,334,276
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20044
    metabolic process 12101
      small molecule metabolic process 1811
        nucleobase-containing small molecule metabolic process 598
          nucleoside phosphate metabolic process 526
            nucleoside monophosphate metabolic process 85
              pyrimidine nucleoside monophosphate metabolic process 22
                pyrimidine deoxyribonucleoside monophosphate metabolic process 13
                  dCMP metabolic process + 5
                  dTMP metabolic process + 6
                  dUMP metabolic process + 9
                  pyrimidine deoxyribonucleoside monophosphate biosynthetic process + 5
                  pyrimidine deoxyribonucleoside monophosphate catabolic process + 8
Path 2
Term Annotations click to browse term
  biological_process 20044
    metabolic process 12101
      cellular metabolic process 11040
        cellular nitrogen compound metabolic process 6722
          nucleobase-containing compound metabolic process 5498
            nucleobase-containing small molecule metabolic process 598
              nucleoside phosphate metabolic process 526
                nucleoside monophosphate metabolic process 85
                  deoxyribonucleoside monophosphate metabolic process 25
                    pyrimidine deoxyribonucleoside monophosphate metabolic process 13
                      dCMP metabolic process + 5
                      dTMP metabolic process + 6
                      dUMP metabolic process + 9
                      pyrimidine deoxyribonucleoside monophosphate biosynthetic process + 5
                      pyrimidine deoxyribonucleoside monophosphate catabolic process + 8
paths to the root