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ONTOLOGY REPORT - ANNOTATIONS


Term:pyrimidine ribonucleoside monophosphate metabolic process
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Accession:GO:0009173 term browser browse the term
Definition:The chemical reactions and pathways involving pyrimidine ribonucleoside monophosphate, a compound consisting of a pyrimidine base linked to a ribose sugar esterified with phosphate on the sugar.
Synonyms:exact_synonym: pyrimidine ribonucleoside monophosphate metabolism


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'de novo' UMP biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CAD carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase IEA UniProt GO_REF:0000041 NCBI chr 3:111,887,017...111,914,511
Ensembl chr 3:111,887,020...111,914,495
JBrowse link
G DHODH dihydroorotate dehydrogenase (quinone) IEA UniProt GO_REF:0000041 NCBI chr 6:14,942,898...14,956,000
Ensembl chr 6:14,942,933...14,956,000
JBrowse link
G UMPS uridine monophosphate synthetase IEA UniProt GO_REF:0000041 NCBI chr13:135,611,857...135,650,656
Ensembl chr13:135,610,058...135,650,604
JBrowse link
CMP catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DPYD dihydropyrimidine dehydrogenase ISO (MGI:53656|PMID:5472365) MGI PMID:5472365 MGI:53656 NCBI chr 4:119,931,471...120,712,461
Ensembl chr 4:119,931,458...120,712,462
JBrowse link
G DPYS dihydropyrimidinase ISO (MGI:53656|PMID:5472365) MGI PMID:5472365 MGI:53656 NCBI chr 4:32,791,152...32,879,489
Ensembl chr 4:32,789,460...32,879,489
JBrowse link
G NT5C3A 5'-nucleotidase, cytosolic IIIA ISO (MGI:5504568|PMID:22925580) MGI PMID:22925580 MGI:5504568 NCBI chr18:40,440,890...40,483,043
Ensembl chr18:40,441,102...40,483,376
JBrowse link
G UBP1 upstream binding protein 1 ISO (MGI:53656|PMID:5472365) MGI PMID:5472365 MGI:53656 NCBI chr13:19,203,965...19,276,392
Ensembl chr13:19,204,947...19,276,969
JBrowse link
G UPP1 uridine phosphorylase 1 ISO (MGI:2683856|PMID:14715930) MGI PMID:14715930 MGI:2683856 NCBI chr18:48,418,385...48,440,414
Ensembl chr18:48,418,385...48,440,736
JBrowse link
G UPP2 uridine phosphorylase 2 ISO (MGI:2683856|PMID:14715930) MGI PMID:14715930 MGI:2683856 NCBI chr15:65,088,652...65,131,739
Ensembl chr15:65,088,284...65,131,789
JBrowse link
UMP biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G UMPS uridine monophosphate synthetase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:135,611,857...135,650,656
Ensembl chr13:135,610,058...135,650,604
JBrowse link
G UPRT uracil phosphoribosyltransferase homolog ISO RGD PMID:1476792 RGD:5132591 NCBI chr  X:60,426,955...60,448,174
Ensembl chr  X:60,426,975...60,451,480
JBrowse link
UMP catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DPYD dihydropyrimidine dehydrogenase IEA Ensembl GO_REF:0000107 NCBI chr 4:119,931,471...120,712,461
Ensembl chr 4:119,931,458...120,712,462
JBrowse link
G DPYS dihydropyrimidinase IEA Ensembl GO_REF:0000107 NCBI chr 4:32,791,152...32,879,489
Ensembl chr 4:32,789,460...32,879,489
JBrowse link
G NT5C 5', 3'-nucleotidase, cytosolic IEA Ensembl GO_REF:0000107 NCBI chr12:6,162,420...6,164,143
Ensembl chr12:6,139,439...6,164,142
JBrowse link
G UPB1 beta-ureidopropionase 1 IEA Ensembl GO_REF:0000107 NCBI chr14:49,533,208...49,561,518
Ensembl chr14:49,533,226...49,565,100
JBrowse link
G UPP1 uridine phosphorylase 1 ISO (MGI:2683856|PMID:14715930), (MGI:73237|PMID:7744869) MGI PMID:7744869 PMID:14715930 MGI:2683856 MGI:73237 NCBI chr18:48,418,385...48,440,414
Ensembl chr18:48,418,385...48,440,736
JBrowse link
G UPP2 uridine phosphorylase 2 ISO (MGI:2683856|PMID:14715930) MGI PMID:14715930 MGI:2683856 NCBI chr15:65,088,652...65,131,739
Ensembl chr15:65,088,284...65,131,789
JBrowse link
UMP salvage term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G UCK1 uridine-cytidine kinase 1 IEA UniProt GO_REF:0000041 NCBI chr 1:271,448,362...271,453,811
Ensembl chr 1:271,448,364...271,453,816
JBrowse link
G UCK2 uridine-cytidine kinase 2 IEA UniProt GO_REF:0000041 NCBI chr 4:84,838,793...84,919,231
Ensembl chr 4:84,838,802...84,919,236
JBrowse link
G UCKL1 uridine-cytidine kinase 1 like 1 IEA UniProt GO_REF:0000041 NCBI chr17:62,785,419...62,796,396
Ensembl chr17:62,785,419...62,807,552
JBrowse link
G UPP1 uridine phosphorylase 1 IEA UniProt GO_REF:0000041 NCBI chr18:48,418,385...48,440,414
Ensembl chr18:48,418,385...48,440,736
JBrowse link
G UPP2 uridine phosphorylase 2 IEA UniProt GO_REF:0000041 NCBI chr15:65,088,652...65,131,739
Ensembl chr15:65,088,284...65,131,789
JBrowse link
G ZNF512B zinc finger protein 512B IEA UniProt GO_REF:0000041 NCBI chr17:62,796,583...62,807,340
Ensembl chr17:62,785,419...62,807,552
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16530
    metabolic process 10415
      small molecule metabolic process 1598
        nucleobase-containing small molecule metabolic process 509
          nucleoside phosphate metabolic process 446
            nucleoside monophosphate metabolic process 73
              pyrimidine nucleoside monophosphate metabolic process 21
                pyrimidine ribonucleoside monophosphate metabolic process 16
                  CMP metabolic process + 6
                  TMP metabolic process + 0
                  UMP metabolic process + 14
                  pyrimidine ribonucleoside monophosphate biosynthetic process + 10
                  pyrimidine ribonucleoside monophosphate catabolic process + 8
Path 2
Term Annotations click to browse term
  biological_process 16530
    metabolic process 10415
      cellular metabolic process 9506
        cellular nitrogen compound metabolic process 5635
          nucleobase-containing compound metabolic process 4899
            nucleobase-containing small molecule metabolic process 509
              nucleoside phosphate metabolic process 446
                nucleoside monophosphate metabolic process 73
                  ribonucleoside monophosphate metabolic process 54
                    pyrimidine ribonucleoside monophosphate metabolic process 16
                      CMP metabolic process + 6
                      TMP metabolic process + 0
                      UMP metabolic process + 14
                      pyrimidine ribonucleoside monophosphate biosynthetic process + 10
                      pyrimidine ribonucleoside monophosphate catabolic process + 8
paths to the root