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ONTOLOGY REPORT - ANNOTATIONS


Term:pyrimidine ribonucleoside monophosphate metabolic process
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Accession:GO:0009173 term browser browse the term
Definition:The chemical reactions and pathways involving pyrimidine ribonucleoside monophosphate, a compound consisting of a pyrimidine base linked to a ribose sugar esterified with phosphate on the sugar.
Synonyms:exact_synonym: pyrimidine ribonucleoside monophosphate metabolism


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'de novo' UMP biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Umps uridine monophosphate synthetase IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr16:33,954,782...33,967,038
Ensembl chr16:33,954,782...33,967,038
JBrowse link
CMP catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cda cytidine deaminase ISO MGI GO_REF:0000008 MGI:2154458 NCBI chr 4:138,338,528...138,368,311
Ensembl chr 4:138,338,424...138,367,992
JBrowse link
G Dpyd dihydropyrimidine dehydrogenase IDA (MGI:53656|PMID:5472365) MGI PMID:5472365 MGI:53656 NCBI chr 3:118,562,109...119,432,924
Ensembl chr 3:118,562,129...119,432,924
JBrowse link
G Dpys dihydropyrimidinase IDA (MGI:53656|PMID:5472365) MGI PMID:5472365 MGI:53656 NCBI chr15:39,768,485...39,857,470
Ensembl chr15:39,768,487...39,857,470
JBrowse link
G Nt5c3 5'-nucleotidase, cytosolic III IDA (MGI:5504568|PMID:22925580) MGI PMID:22925580 MGI:5504568 NCBI chr 6:56,882,400...56,924,008
Ensembl chr 6:56,882,400...56,923,932
JBrowse link
G Ubp1 upstream binding protein 1 IDA (MGI:53656|PMID:5472365) MGI PMID:5472365 MGI:53656 NCBI chr 9:113,930,939...113,978,027
Ensembl chr 9:113,930,934...113,977,202
JBrowse link
G Upp1 uridine phosphorylase 1 IDA (MGI:2683856|PMID:14715930) MGI PMID:14715930 MGI:2683856 NCBI chr11:9,118,008...9,136,170
Ensembl chr11:9,118,103...9,136,170
JBrowse link
G Upp2 uridine phosphorylase 2 IDA (MGI:2683856|PMID:14715930) MGI PMID:14715930 MGI:2683856 NCBI chr 2:58,566,317...58,795,846
Ensembl chr 2:58,567,298...58,792,971
JBrowse link
CMP salvage term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Uck2 uridine-cytidine kinase 2 IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr 1:167,222,895...167,285,933
Ensembl chr 1:167,222,883...167,285,320
JBrowse link
UMP biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Umps uridine monophosphate synthetase ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4417868 MGI:4834177 MGI:6201960 NCBI chr16:33,954,782...33,967,038
Ensembl chr16:33,954,782...33,967,038
JBrowse link
G Uprt uracil phosphoribosyltransferase ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr  X:104,482,803...104,512,223
Ensembl chr  X:104,482,818...104,507,490
JBrowse link
UMP catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase IDA (MGI:53656|PMID:5472365) MGI PMID:5472365 MGI:53656 NCBI chr 3:118,562,109...119,432,924
Ensembl chr 3:118,562,129...119,432,924
JBrowse link
G Dpys dihydropyrimidinase IDA (MGI:53656|PMID:5472365) MGI PMID:5472365 MGI:53656 NCBI chr15:39,768,485...39,857,470
Ensembl chr15:39,768,487...39,857,470
JBrowse link
G Nt5c 5',3'-nucleotidase, cytosolic IDA (MGI:1353788|PMID:10681516) MGI PMID:10681516 MGI:1353788 NCBI chr11:115,490,420...115,492,070
Ensembl chr11:115,490,420...115,491,862
JBrowse link
G Nt5c3 5'-nucleotidase, cytosolic III ISO MGI GO_REF:0000008 MGI:2154458 NCBI chr 6:56,882,400...56,924,008
Ensembl chr 6:56,882,400...56,923,932
JBrowse link
G Upb1 ureidopropionase, beta IDA (MGI:53656|PMID:5472365) MGI PMID:5472365 MGI:53656 NCBI chr10:75,406,911...75,441,679
Ensembl chr10:75,401,115...75,441,679
JBrowse link
G Upp1 uridine phosphorylase 1 IDA (MGI:2683856|PMID:14715930), (MGI:73237|PMID:7744869) MGI PMID:7744869 PMID:14715930 MGI:2683856 MGI:73237 NCBI chr11:9,118,008...9,136,170
Ensembl chr11:9,118,103...9,136,170
JBrowse link
G Upp2 uridine phosphorylase 2 IDA (MGI:2683856|PMID:14715930) MGI PMID:14715930 MGI:2683856 NCBI chr 2:58,566,317...58,795,846
Ensembl chr 2:58,567,298...58,792,971
JBrowse link
UMP salvage term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Uck2 uridine-cytidine kinase 2 IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr 1:167,222,895...167,285,933
Ensembl chr 1:167,222,883...167,285,320
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 23347
    metabolic process 11093
      small molecule metabolic process 1704
        nucleobase-containing small molecule metabolic process 522
          nucleoside phosphate metabolic process 459
            nucleoside monophosphate metabolic process 65
              pyrimidine nucleoside monophosphate metabolic process 18
                pyrimidine ribonucleoside monophosphate metabolic process 12
                  CMP metabolic process + 8
                  TMP metabolic process + 0
                  UMP metabolic process + 10
                  pyrimidine ribonucleoside monophosphate biosynthetic process + 3
                  pyrimidine ribonucleoside monophosphate catabolic process + 9
Path 2
Term Annotations click to browse term
  biological_process 23347
    metabolic process 11093
      cellular metabolic process 10038
        cellular nitrogen compound metabolic process 5988
          nucleobase-containing compound metabolic process 5195
            nucleobase-containing small molecule metabolic process 522
              nucleoside phosphate metabolic process 459
                nucleoside monophosphate metabolic process 65
                  ribonucleoside monophosphate metabolic process 52
                    pyrimidine ribonucleoside monophosphate metabolic process 12
                      CMP metabolic process + 8
                      TMP metabolic process + 0
                      UMP metabolic process + 10
                      pyrimidine ribonucleoside monophosphate biosynthetic process + 3
                      pyrimidine ribonucleoside monophosphate catabolic process + 9
paths to the root