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ONTOLOGY REPORT - ANNOTATIONS


Term:pyrimidine ribonucleoside monophosphate metabolic process
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Accession:GO:0009173 term browser browse the term
Definition:The chemical reactions and pathways involving pyrimidine ribonucleoside monophosphate, a compound consisting of a pyrimidine base linked to a ribose sugar esterified with phosphate on the sugar.
Synonyms:exact_synonym: pyrimidine ribonucleoside monophosphate metabolism


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'de novo' UMP biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CAD carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase IEA UniProt GO_REF:0000041 NCBI chr17:21,198,839...21,221,897
Ensembl chr17:21,197,826...21,221,635
JBrowse link
G DHODH dihydroorotate dehydrogenase (quinone) IEA UniProt GO_REF:0000041 NCBI chr 5:77,756,411...77,766,207
Ensembl chr 5:77,756,407...77,774,090
JBrowse link
G UMPS uridine monophosphate synthetase IEA UniProt GO_REF:0000041 NCBI chr33:27,754,592...27,782,517
Ensembl chr33:27,754,643...27,782,514
JBrowse link
CMP catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DPYD dihydropyrimidine dehydrogenase ISO (MGI:53656|PMID:5472365) MGI PMID:5472365 MGI:53656 NCBI chr 6:51,789,786...52,564,802
Ensembl chr 6:51,814,573...52,580,923
JBrowse link
G DPYS dihydropyrimidinase ISO (MGI:53656|PMID:5472365) MGI PMID:5472365 MGI:53656 NCBI chr13:5,583,795...5,659,355
Ensembl chr13:5,583,801...5,659,463
JBrowse link
G LOC100856638 uridine phosphorylase 1-like ISO (MGI:2683856|PMID:14715930) MGI PMID:14715930 MGI:2683856
G NT5C3A 5'-nucleotidase, cytosolic IIIA ISO (MGI:5504568|PMID:22925580) MGI PMID:22925580 MGI:5504568 NCBI chr14:45,076,487...45,132,000
Ensembl chr14:45,077,099...45,131,905
JBrowse link
G UBP1 upstream binding protein 1 ISO (MGI:53656|PMID:5472365) MGI PMID:5472365 MGI:53656 NCBI chr23:3,445,730...3,498,242
Ensembl chr23:3,444,758...3,497,263
JBrowse link
UMP biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G UMPS uridine monophosphate synthetase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr33:27,754,592...27,782,517
Ensembl chr33:27,754,643...27,782,514
JBrowse link
G UPRT uracil phosphoribosyltransferase homolog ISO RGD PMID:1476792 RGD:5132591 NCBI chr  X:58,570,623...58,576,980
Ensembl chr  X:58,543,425...58,575,926
JBrowse link
UMP catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DPYD dihydropyrimidine dehydrogenase IEA Ensembl GO_REF:0000107 NCBI chr 6:51,789,786...52,564,802
Ensembl chr 6:51,814,573...52,580,923
JBrowse link
G DPYS dihydropyrimidinase IEA Ensembl GO_REF:0000107 NCBI chr13:5,583,795...5,659,355
Ensembl chr13:5,583,801...5,659,463
JBrowse link
G LOC100856638 uridine phosphorylase 1-like ISO (MGI:2683856|PMID:14715930), (MGI:73237|PMID:7744869) MGI PMID:7744869 PMID:14715930 MGI:2683856 MGI:73237
G NT5C 5', 3'-nucleotidase, cytosolic ISO (MGI:1353788|PMID:10681516) MGI PMID:10681516 MGI:1353788 NCBI chr 9:5,342,793...5,344,432
Ensembl chr 9:5,343,378...5,344,380
JBrowse link
G UPB1 beta-ureidopropionase 1 IEA Ensembl GO_REF:0000107 NCBI chr26:28,194,968...28,225,977
Ensembl chr26:28,195,081...28,225,567
JBrowse link
UMP salvage term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G UCK1 uridine-cytidine kinase 1 IEA UniProt GO_REF:0000041 NCBI chr 9:52,609,972...52,615,655
Ensembl chr 9:52,609,313...52,614,622
JBrowse link
G UCK2 uridine-cytidine kinase 2 IEA UniProt GO_REF:0000041 NCBI chr38:17,475,789...17,555,926
Ensembl chr38:17,479,558...17,579,675
JBrowse link
G UCKL1 uridine-cytidine kinase 1 like 1 IEA UniProt GO_REF:0000041 NCBI chr24:47,412,520...47,423,222
Ensembl chr24:47,412,521...47,432,860
JBrowse link
G ZNF512B zinc finger protein 512B IEA UniProt GO_REF:0000041 NCBI chr24:47,423,699...47,434,114
Ensembl chr24:47,412,521...47,432,860
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16176
    metabolic process 10503
      small molecule metabolic process 1618
        nucleobase-containing small molecule metabolic process 548
          nucleoside phosphate metabolic process 479
            nucleoside monophosphate metabolic process 76
              pyrimidine nucleoside monophosphate metabolic process 20
                pyrimidine ribonucleoside monophosphate metabolic process 15
                  CMP metabolic process + 5
                  TMP metabolic process + 0
                  UMP metabolic process + 13
                  pyrimidine ribonucleoside monophosphate biosynthetic process + 8
                  pyrimidine ribonucleoside monophosphate catabolic process + 7
Path 2
Term Annotations click to browse term
  biological_process 16176
    metabolic process 10503
      cellular metabolic process 9569
        cellular nitrogen compound metabolic process 5714
          nucleobase-containing compound metabolic process 4902
            nucleobase-containing small molecule metabolic process 548
              nucleoside phosphate metabolic process 479
                nucleoside monophosphate metabolic process 76
                  ribonucleoside monophosphate metabolic process 55
                    pyrimidine ribonucleoside monophosphate metabolic process 15
                      CMP metabolic process + 5
                      TMP metabolic process + 0
                      UMP metabolic process + 13
                      pyrimidine ribonucleoside monophosphate biosynthetic process + 8
                      pyrimidine ribonucleoside monophosphate catabolic process + 7
paths to the root