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ONTOLOGY REPORT - ANNOTATIONS

Term:pyrimidine ribonucleoside monophosphate metabolic process
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Accession:GO:0009173 term browser browse the term
Definition:The chemical reactions and pathways involving pyrimidine ribonucleoside monophosphate, a compound consisting of a pyrimidine base linked to a ribose sugar esterified with phosphate on the sugar.
Synonyms:exact_synonym: pyrimidine ribonucleoside monophosphate metabolism


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'de novo' UMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CAD carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in IEA UniProt
Ensembl		 GO_REF:0000041 GO_REF:0000107 NCBI chr17:21,198,839...21,221,897
Ensembl chr17:21,197,826...21,221,635 		JBrowse link
G DHODH dihydroorotate dehydrogenase (quinone) involved_in IEA UniProt GO_REF:0000041 NCBI chr 5:77,756,411...77,766,207
Ensembl chr 5:77,756,407...77,774,090 		JBrowse link
G LOC479668 haptoglobin-like involved_in IEA UniProt GO_REF:0000041 NCBI chr 5:77,795,183...77,800,034 JBrowse link
G TRIM54 tripartite motif containing 54 involved_in IEA UniProt GO_REF:0000041 NCBI chr17:21,257,660...21,278,410
Ensembl chr17:21,257,706...21,278,274 		JBrowse link
G UMPS uridine monophosphate synthetase involved_in IEA InterPro
Ensembl
UniProt		 GO_REF:0000002 GO_REF:0000041 GO_REF:0000107 NCBI chr33:27,754,592...27,782,517
Ensembl chr33:27,754,643...27,782,514 		JBrowse link
CMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCK deoxycytidine kinase involved_in IEA GOC GO_REF:0000108 NCBI chr13:60,206,742...60,236,338
Ensembl chr13:60,205,937...60,235,678 		JBrowse link
G UCK1 uridine-cytidine kinase 1 involved_in IEA GOC GO_REF:0000108 NCBI chr 9:52,609,972...52,615,655
Ensembl chr 9:52,609,313...52,614,622 		JBrowse link
G UCK2 uridine-cytidine kinase 2 involved_in IEA GOC GO_REF:0000108 NCBI chr38:17,475,789...17,555,926
Ensembl chr38:17,479,558...17,579,675 		JBrowse link
CMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DPYD dihydropyrimidine dehydrogenase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:51,789,786...52,564,802
Ensembl chr 6:51,814,573...52,580,923 		JBrowse link
G DPYS dihydropyrimidinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:5,583,795...5,659,355
Ensembl chr13:5,583,801...5,659,463 		JBrowse link
G NT5C3A 5'-nucleotidase, cytosolic IIIA involved_in ISO (PMID:22925580) MGI PMID:22925580 NCBI chr14:45,076,487...45,132,000
Ensembl chr14:45,077,099...45,131,905 		JBrowse link
G UPB1 beta-ureidopropionase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:28,194,968...28,225,977
Ensembl chr26:28,195,081...28,225,567 		JBrowse link
G UPP1 uridine phosphorylase 1 involved_in ISO (PMID:14715930) MGI PMID:14715930 NCBI chr18:108,215...120,213 JBrowse link
UMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G UCK1 uridine-cytidine kinase 1 acts_upstream_of_or_within ISO (MGI:84399|PMID:8951040) GOC PMID:8951040 MGI:84399 NCBI chr 9:52,609,972...52,615,655
Ensembl chr 9:52,609,313...52,614,622 		JBrowse link
G UMPS uridine monophosphate synthetase involved_in ISO
IEA		 RGD
TreeGrafter
Ensembl		 PMID:6134725 GO_REF:0000107 GO_REF:0000118 RGD:5132277 NCBI chr33:27,754,592...27,782,517
Ensembl chr33:27,754,643...27,782,514 		JBrowse link
G UPRT uracil phosphoribosyltransferase homolog ISO RGD PMID:1476792 RGD:5132591 NCBI chr  X:58,570,623...58,576,980
Ensembl chr  X:58,543,425...58,575,926 		JBrowse link
UMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DPYD dihydropyrimidine dehydrogenase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:51,789,786...52,564,802
Ensembl chr 6:51,814,573...52,580,923 		JBrowse link
G DPYS dihydropyrimidinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:5,583,795...5,659,355
Ensembl chr13:5,583,801...5,659,463 		JBrowse link
G NT5C 5', 3'-nucleotidase, cytosolic involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:5,342,793...5,344,432
Ensembl chr 9:5,343,378...5,344,380 		JBrowse link
G UPB1 beta-ureidopropionase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:28,194,968...28,225,977
Ensembl chr26:28,195,081...28,225,567 		JBrowse link
G UPP1 uridine phosphorylase 1 involved_in ISO (PMID:14715930), (PMID:7744869) MGI PMID:7744869 PMID:14715930 NCBI chr18:108,215...120,213 JBrowse link
UMP salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDA cytidine deaminase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:78,305,328...78,327,229
Ensembl chr 2:78,304,726...78,327,247 		JBrowse link
G UCK1 uridine-cytidine kinase 1 involved_in IEA UniProt
Ensembl		 GO_REF:0000041 GO_REF:0000107 NCBI chr 9:52,609,972...52,615,655
Ensembl chr 9:52,609,313...52,614,622 		JBrowse link
G UCK2 uridine-cytidine kinase 2 involved_in IEA Ensembl
UniProt		 GO_REF:0000041 GO_REF:0000107 NCBI chr38:17,475,789...17,555,926
Ensembl chr38:17,479,558...17,579,675 		JBrowse link
G UCKL1 uridine-cytidine kinase 1 like 1 involved_in IEA UniProt GO_REF:0000041 NCBI chr24:47,412,520...47,423,222
Ensembl chr24:47,412,521...47,432,860 		JBrowse link
G UPP1 uridine phosphorylase 1 involved_in ISO (PMID:11956089) MGI PMID:11956089 NCBI chr18:108,215...120,213 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17917
    metabolic process 10998
      small molecule metabolic process 1831
        nucleobase-containing small molecule metabolic process 682
          nucleoside phosphate metabolic process 615
            nucleoside monophosphate metabolic process 93
              pyrimidine nucleoside monophosphate metabolic process 21
                pyrimidine ribonucleoside monophosphate metabolic process 17
                  CMP metabolic process + 8
                  TMP metabolic process + 0
                  UMP metabolic process + 15
                  pyrimidine ribonucleoside monophosphate biosynthetic process + 12
                  pyrimidine ribonucleoside monophosphate catabolic process + 6
Path 2
Term Annotations click to browse term
  biological_process 17917
    metabolic process 10998
      organic substance metabolic process 10554
        organic cyclic compound metabolic process 5907
          nucleobase-containing compound metabolic process 5439
            nucleobase-containing small molecule metabolic process 682
              nucleoside phosphate metabolic process 615
                nucleoside monophosphate metabolic process 93
                  ribonucleoside monophosphate metabolic process 73
                    pyrimidine ribonucleoside monophosphate metabolic process 17
                      CMP metabolic process + 8
                      TMP metabolic process + 0
                      UMP metabolic process + 15
                      pyrimidine ribonucleoside monophosphate biosynthetic process + 12
                      pyrimidine ribonucleoside monophosphate catabolic process + 6
paths to the root