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ONTOLOGY REPORT - ANNOTATIONS

Term:pyrimidine ribonucleoside monophosphate metabolic process
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Accession:GO:0009173 term browser browse the term
Definition:The chemical reactions and pathways involving pyrimidine ribonucleoside monophosphate, a compound consisting of a pyrimidine base linked to a ribose sugar esterified with phosphate on the sugar.
Synonyms:exact_synonym: pyrimidine ribonucleoside monophosphate metabolism


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'de novo' UMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CAD carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in IEA Ensembl
UniProt		 GO_REF:0000041 GO_REF:0000107 NCBI chr2A:27,218,699...27,245,156
Ensembl chr2A:27,306,527...27,332,804 		JBrowse link
G DHODH dihydroorotate dehydrogenase (quinone) involved_in IEA UniProt
Ensembl		 GO_REF:0000041 GO_REF:0000107 NCBI chr16:52,977,879...52,994,496
Ensembl chr16:71,854,238...71,870,673 		JBrowse link
G UMPS uridine monophosphate synthetase involved_in IEA InterPro
UniProt
Ensembl		 GO_REF:0000002 GO_REF:0000041 GO_REF:0000107 NCBI chr 3:121,832,758...121,851,707
Ensembl chr 3:128,731,355...128,745,029 		JBrowse link
CMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G UCK1 uridine-cytidine kinase 1 involved_in IEA GOC GO_REF:0000108 NCBI chr 9:102,646,056...102,653,525
Ensembl chr 9:131,285,877...131,293,338 		JBrowse link
G UCK2 uridine-cytidine kinase 2 involved_in IEA GOC GO_REF:0000108 NCBI chr 1:141,259,057...141,343,122
Ensembl chr 1:145,110,434...145,131,894 		JBrowse link
G UCKL1 uridine-cytidine kinase 1 like 1 involved_in IEA GOC GO_REF:0000108 Ensembl chr20:61,860,084...61,876,194 JBrowse link
CMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DPYD dihydropyrimidine dehydrogenase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:99,736,145...100,576,663
Ensembl chr 1:98,457,934...99,300,100 		JBrowse link
G DPYS dihydropyrimidinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:101,008,090...101,096,234
Ensembl chr 8:103,160,922...103,248,303 		JBrowse link
G LOC100995749 uridine phosphorylase 2 involved_in ISO (PMID:14715930) MGI PMID:14715930 NCBI chr2B:45,363,103...45,400,281
Ensembl chr2B:162,496,507...162,636,231 		JBrowse link
G NT5C3A 5'-nucleotidase, cytosolic IIIA involved_in ISO (PMID:22925580) MGI PMID:22925580 NCBI chr 7:33,608,746...33,657,380
Ensembl chr 7:34,009,467...34,057,740 		JBrowse link
G UPB1 beta-ureidopropionase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:5,300,686...5,332,735
Ensembl chr22:22,166,370...22,197,360 		JBrowse link
G UPP1 uridine phosphorylase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:48,729,975...48,749,598
Ensembl chr 7:48,838,893...48,858,185 		JBrowse link
UMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G UCK1 uridine-cytidine kinase 1 acts_upstream_of_or_within ISO (MGI:84399|PMID:8951040) GOC PMID:8951040 MGI:84399 NCBI chr 9:102,646,056...102,653,525
Ensembl chr 9:131,285,877...131,293,338 		JBrowse link
G UMPS uridine monophosphate synthetase involved_in ISO
IEA		 RGD
TreeGrafter
Ensembl		 PMID:6134725 GO_REF:0000107 GO_REF:0000118 RGD:5132277 NCBI chr 3:121,832,758...121,851,707
Ensembl chr 3:128,731,355...128,745,029 		JBrowse link
G UPRT uracil phosphoribosyltransferase homolog ISO RGD PMID:1476792 RGD:5132591 NCBI chr  X:64,524,889...64,561,439
Ensembl chr  X:74,639,179...74,675,221 		JBrowse link
UMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DPYD dihydropyrimidine dehydrogenase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:99,736,145...100,576,663
Ensembl chr 1:98,457,934...99,300,100 		JBrowse link
G DPYS dihydropyrimidinase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:101,008,090...101,096,234
Ensembl chr 8:103,160,922...103,248,303 		JBrowse link
G LOC100995749 uridine phosphorylase 2 involved_in ISO (PMID:14715930) MGI PMID:14715930 NCBI chr2B:45,363,103...45,400,281
Ensembl chr2B:162,496,507...162,636,231 		JBrowse link
G NT5C 5', 3'-nucleotidase, cytosolic involved_in ISO (PMID:10681516) MGI PMID:10681516 NCBI chr17:69,077,021...69,078,998 JBrowse link
G UPB1 beta-ureidopropionase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:5,300,686...5,332,735
Ensembl chr22:22,166,370...22,197,360 		JBrowse link
G UPP1 uridine phosphorylase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:48,729,975...48,749,598
Ensembl chr 7:48,838,893...48,858,185 		JBrowse link
UMP salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDA cytidine deaminase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:19,538,696...19,568,008
Ensembl chr 1:20,583,441...20,612,711 		JBrowse link
G LOC100995749 uridine phosphorylase 2 involved_in IEA UniProt GO_REF:0000041 NCBI chr2B:45,363,103...45,400,281
Ensembl chr2B:162,496,507...162,636,231 		JBrowse link
G UCK1 uridine-cytidine kinase 1 involved_in IEA UniProt
Ensembl		 GO_REF:0000041 GO_REF:0000107 NCBI chr 9:102,646,056...102,653,525
Ensembl chr 9:131,285,877...131,293,338 		JBrowse link
G UCK2 uridine-cytidine kinase 2 involved_in IEA UniProt
Ensembl		 GO_REF:0000041 GO_REF:0000107 NCBI chr 1:141,259,057...141,343,122
Ensembl chr 1:145,110,434...145,131,894 		JBrowse link
G UCKL1 uridine-cytidine kinase 1 like 1 involved_in IEA UniProt GO_REF:0000041 Ensembl chr20:61,860,084...61,876,194 JBrowse link
G UPP1 uridine phosphorylase 1 involved_in IEA UniProt
Ensembl		 GO_REF:0000041 GO_REF:0000107 NCBI chr 7:48,729,975...48,749,598
Ensembl chr 7:48,838,893...48,858,185 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16440
    metabolic process 10303
      small molecule metabolic process 1669
        nucleobase-containing small molecule metabolic process 605
          nucleoside phosphate metabolic process 539
            nucleoside monophosphate metabolic process 74
              pyrimidine nucleoside monophosphate metabolic process 20
                pyrimidine ribonucleoside monophosphate metabolic process 15
                  CMP metabolic process + 9
                  TMP metabolic process + 0
                  UMP metabolic process + 14
                  pyrimidine ribonucleoside monophosphate biosynthetic process + 10
                  pyrimidine ribonucleoside monophosphate catabolic process + 7
Path 2
Term Annotations click to browse term
  biological_process 16440
    metabolic process 10303
      organic substance metabolic process 9869
        organic cyclic compound metabolic process 5562
          nucleobase-containing compound metabolic process 5109
            nucleobase-containing small molecule metabolic process 605
              nucleoside phosphate metabolic process 539
                nucleoside monophosphate metabolic process 74
                  ribonucleoside monophosphate metabolic process 55
                    pyrimidine ribonucleoside monophosphate metabolic process 15
                      CMP metabolic process + 9
                      TMP metabolic process + 0
                      UMP metabolic process + 14
                      pyrimidine ribonucleoside monophosphate biosynthetic process + 10
                      pyrimidine ribonucleoside monophosphate catabolic process + 7
paths to the root