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ONTOLOGY REPORT - ANNOTATIONS


Term:nucleotide catabolic process
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Accession:GO:0009166 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of nucleotides, any nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic-nucleotides (nucleoside cyclic phosphates).
Synonyms:exact_synonym: nucleotide breakdown;   nucleotide catabolism;   nucleotide degradation


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nucleotide catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Upp1 uridine phosphorylase 1 JBrowse link 14 89,314,234 89,334,060 RGD:1600115
G Upp2 uridine phosphorylase 2 JBrowse link 3 44,806,106 44,846,464 RGD:1600115
acetyl-CoA catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acat1 acetyl-CoA acetyltransferase 1 JBrowse link 8 58,166,990 58,195,884 RGD:1624291
G Nudt7 nudix hydrolase 7 JBrowse link 19 46,455,745 46,470,070 RGD:1624291
adenosine 5'-(hexahydrogen pentaphosphate) catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nudt10 nudix (nucleoside diphosphate linked moiety X)-type motif 10 JBrowse link X 17,540,036 17,541,296 RGD:13792537
G Nudt11 nudix hydrolase 11 JBrowse link X 17,171,510 17,215,108 RGD:13792537
G Nudt3 nudix hydrolase 3 JBrowse link 20 7,155,744 7,208,292 RGD:13792537
G Nudt4 nudix hydrolase 4 JBrowse link 7 36,643,916 36,660,334 RGD:13792537
ADP catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nudt9 nudix hydrolase 9 JBrowse link 14 7,036,809 7,054,739 RGD:1624291
AMP catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ampd3 adenosine monophosphate deaminase 3 JBrowse link 1 175,585,301 175,630,479 RGD:632203
G Nt5e 5' nucleotidase, ecto JBrowse link 8 95,969,002 96,012,733 RGD:5134346
RGD:13792537
RGD:1600115
RGD:1624291
cAMP catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pde10a phosphodiesterase 10A JBrowse link 1 52,360,296 52,544,448 RGD:1600115
G Pde4a phosphodiesterase 4A JBrowse link 8 22,189,533 22,234,036 RGD:1600115
G Pde4b phosphodiesterase 4B JBrowse link 5 121,759,236 122,136,814 RGD:1600115
G Pde4c phosphodiesterase 4C JBrowse link 16 20,442,305 20,466,386 RGD:1600115
G Pde4d phosphodiesterase 4D JBrowse link 2 40,219,999 41,468,551 RGD:1600115
RGD:13792537
RGD:1624291
G Pde7a phosphodiesterase 7A JBrowse link 2 104,042,124 104,134,101 RGD:1600115
cGMP catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Pde10a phosphodiesterase 10A JBrowse link 1 52,360,296 52,544,448 RGD:1600115
G Pde1a phosphodiesterase 1A JBrowse link 3 66,803,247 67,263,658 RGD:2312521
G Pde2a phosphodiesterase 2A JBrowse link 1 166,534,643 166,626,158 RGD:1600115
RGD:13792537
RGD:1624291
G Pde5a phosphodiesterase 5A JBrowse link 2 226,899,604 227,044,916 RGD:1624291
RGD:1600115
G Pde9a phosphodiesterase 9A JBrowse link 20 10,123,624 10,216,325 RGD:1600115
RGD:13792537
RGD:1624291
coenzyme A catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nudt7 nudix hydrolase 7 JBrowse link 19 46,455,745 46,470,070 RGD:1624291
RGD:13792537
cyclic nucleotide catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Cnp 2',3'-cyclic nucleotide 3' phosphodiesterase JBrowse link 10 88,490,798 88,497,357 RGD:1600115
dADP catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nudt18 nudix hydrolase 18 JBrowse link 15 52,265,557 52,268,081 RGD:1624291
RGD:1600115
dATP catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Ada adenosine deaminase JBrowse link 3 160,115,840 160,139,947 RGD:1624291
G Nudt1 nudix hydrolase 1 JBrowse link 12 16,391,578 16,398,771 RGD:1624291
RGD:1600115
G Samhd1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 JBrowse link 3 153,210,829 153,250,705 RGD:1624291
dCTP catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dctpp1 dCTP pyrophosphatase 1 JBrowse link 1 198,703,459 198,706,852 RGD:1624291
RGD:13792537
RGD:1600115
deoxyribonucleotide catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dera deoxyribose-phosphate aldolase JBrowse link 4 171,748,254 171,826,414 RGD:13792537
G Nt5c 5', 3'-nucleotidase, cytosolic JBrowse link 10 104,052,807 104,054,805 RGD:1624291
G Samhd1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 JBrowse link 3 153,210,829 153,250,705 RGD:1624291
dGDP catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nudt18 nudix hydrolase 18 JBrowse link 15 52,265,557 52,268,081 RGD:1624291
RGD:1600115
dGTP catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nudt1 nudix hydrolase 1 JBrowse link 12 16,391,578 16,398,771 RGD:1624291
RGD:1600115
G Nudt15 nudix hydrolase 15 JBrowse link 15 55,417,774 55,456,698 RGD:1624291
RGD:13792537
G Samhd1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 JBrowse link 3 153,210,829 153,250,705 RGD:1624291
RGD:13792537
diadenosine hexaphosphate catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nudt10 nudix (nucleoside diphosphate linked moiety X)-type motif 10 JBrowse link X 17,540,036 17,541,296 RGD:13792537
G Nudt11 nudix hydrolase 11 JBrowse link X 17,171,510 17,215,108 RGD:13792537
G Nudt3 nudix hydrolase 3 JBrowse link 20 7,155,744 7,208,292 RGD:13792537
G Nudt4 nudix hydrolase 4 JBrowse link 7 36,643,916 36,660,334 RGD:13792537
diadenosine pentaphosphate catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nudt10 nudix (nucleoside diphosphate linked moiety X)-type motif 10 JBrowse link X 17,540,036 17,541,296 RGD:13792537
G Nudt11 nudix hydrolase 11 JBrowse link X 17,171,510 17,215,108 RGD:13792537
G Nudt3 nudix hydrolase 3 JBrowse link 20 7,155,744 7,208,292 RGD:13792537
G Nudt4 nudix hydrolase 4 JBrowse link 7 36,643,916 36,660,334 RGD:13792537
diadenosine triphosphate catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Fhit fragile histidine triad diadenosine triphosphatase JBrowse link 15 15,697,292 16,862,873 RGD:2289929
RGD:13792537
dITP catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nudt16 nudix hydrolase 16 JBrowse link 8 113,673,069 113,675,124 RGD:1624291
dTTP catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Dctpp1 dCTP pyrophosphatase 1 JBrowse link 1 198,703,459 198,706,852 RGD:1624291
dUMP catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nt5m 5',3'-nucleotidase, mitochondrial JBrowse link 10 46,216,494 46,244,478 RGD:1624291
dUTP catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07001512.1 RGD:13792537
G Dut deoxyuridine triphosphatase JBrowse link 3 117,514,399 117,525,450 RGD:2300191
RGD:13792537
RGD:2301218
flavin adenine dinucleotide catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Vcp valosin-containing protein JBrowse link 5 58,426,548 58,445,953 RGD:1624291
GDP catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nudt18 nudix hydrolase 18 JBrowse link 15 52,265,557 52,268,081 RGD:1624291
RGD:1600115
GMP catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Hprt1 hypoxanthine phosphoribosyltransferase 1 JBrowse link X 158,196,640 158,228,815 RGD:1624291
RGD:1600115
G LOC103689983 hypoxanthine-guanine phosphoribosyltransferase JBrowse link X 158,623,231 158,655,277 RGD:1600115
G Prtfdc1 phosphoribosyl transferase domain containing 1 JBrowse link 17 87,926,242 88,037,040 RGD:1624291
IDP catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nudt16 nudix hydrolase 16 JBrowse link 8 113,673,069 113,675,124 RGD:1624291
G Nudt9 nudix hydrolase 9 JBrowse link 14 7,036,809 7,054,739 RGD:1624291
ITP catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Itpa inosine triphosphatase JBrowse link 3 123,209,611 123,221,266 RGD:1624291
long-chain fatty-acyl-CoA catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acot7 acyl-CoA thioesterase 7 JBrowse link 5 169,357,582 169,450,215 RGD:1624291
malonyl-CoA catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Mlycd malonyl-CoA decarboxylase JBrowse link 19 52,032,950 52,048,773 RGD:1624291
RGD:1600115
RGD:13792537
medium-chain fatty-acyl-CoA catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Acot7 acyl-CoA thioesterase 7 JBrowse link 5 169,357,582 169,450,215 RGD:1624291
NAD catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Art2b ADP-ribosyltransferase 2b JBrowse link 1 166,665,029 166,685,097 RGD:1600115
G Nudt12 nudix hydrolase 12 JBrowse link 9 105,680,603 105,693,374 RGD:1624291
RGD:13792537
G Nudt17 nudix hydrolase 17 JBrowse link 2 198,831,546 198,836,191 RGD:13792537
G Sarm1 sterile alpha and TIR motif containing 1 JBrowse link 10 65,742,343 65,766,050 RGD:1624291
NADP catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nudt12 nudix hydrolase 12 JBrowse link 9 105,680,603 105,693,374 RGD:1624291
RGD:13792537
G Nudt13 nudix hydrolase 13 JBrowse link 15 4,434,341 4,454,871 RGD:1624291
G Nudt17 nudix hydrolase 17 JBrowse link 2 198,831,546 198,836,191 RGD:13792537
purine nucleotide catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nudt1 nudix hydrolase 1 JBrowse link 12 16,391,578 16,398,771 RGD:1624291
RGD:1600115
G Nudt15 nudix hydrolase 15 JBrowse link 15 55,417,774 55,456,698 RGD:1624291
purine ribonucleotide catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G AABR07060778.1 RGD:13792537
G Hint1 histidine triad nucleotide binding protein 1 JBrowse link 10 40,208,236 40,211,981 RGD:1624291
RGD:13792537
RGD:1600115
G Hint1-ps1 histidine triad nucleotide binding protein 1, pseudogene 1 JBrowse link 4 93,405,665 93,406,239 RGD:13792537
pyrimidine deoxyribonucleotide catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nt5c 5', 3'-nucleotidase, cytosolic JBrowse link 10 104,052,807 104,054,805 RGD:1624291
RGD:13792537
G Nt5m 5',3'-nucleotidase, mitochondrial JBrowse link 10 46,216,494 46,244,478 RGD:13792537
UDP catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 JBrowse link 15 51,222,954 51,250,787 RGD:1624291
very long-chain fatty-acyl-CoA catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Abcd1 ATP binding cassette subfamily D member 1 JBrowse link X 157,073,860 157,095,652 RGD:1624291
RGD:1600115
XDP catabolic process term browser
Symbol Object Name JBrowse Chr Start Stop Reference
G Nudt16 nudix hydrolase 16 JBrowse link 8 113,673,069 113,675,124 RGD:1624291

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19858
    metabolic process 12097
      organic substance metabolic process 11495
        organophosphate metabolic process 955
          nucleoside phosphate metabolic process 503
            nucleotide metabolic process 496
              nucleotide catabolic process 52
                bis(5'-nucleosidyl) oligophosphate catabolic process 0
                cyclic nucleotide catabolic process + 11
                deoxyribonucleotide catabolic process + 12
                diadenosine polyphosphate catabolic process + 5
                flavin adenine dinucleotide catabolic process 1
                negative regulation of nucleotide catabolic process + 0
                positive regulation of nucleotide catabolic process + 0
                purine nucleotide catabolic process + 35
                pyridine nucleotide catabolic process + 5
                pyrimidine nucleotide catabolic process + 6
                regulation of nucleotide catabolic process + 0
                ribonucleotide catabolic process + 32
Path 2
Term Annotations click to browse term
  biological_process 19858
    metabolic process 12097
      cellular metabolic process 10918
        cellular aromatic compound metabolic process 5567
          nucleobase-containing compound metabolic process 5344
            nucleobase-containing small molecule metabolic process 582
              nucleoside phosphate metabolic process 503
                nucleotide metabolic process 496
                  nucleotide catabolic process 52
                    bis(5'-nucleosidyl) oligophosphate catabolic process 0
                    cyclic nucleotide catabolic process + 11
                    deoxyribonucleotide catabolic process + 12
                    diadenosine polyphosphate catabolic process + 5
                    flavin adenine dinucleotide catabolic process 1
                    negative regulation of nucleotide catabolic process + 0
                    positive regulation of nucleotide catabolic process + 0
                    purine nucleotide catabolic process + 35
                    pyridine nucleotide catabolic process + 5
                    pyrimidine nucleotide catabolic process + 6
                    regulation of nucleotide catabolic process + 0
                    ribonucleotide catabolic process + 32
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.