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ONTOLOGY REPORT - ANNOTATIONS

Term:nucleoside biosynthetic process
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Accession:GO:0009163 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of any one of a family of organic molecules consisting of a purine or pyrimidine base covalently bonded to a sugar ribose (a ribonucleoside) or deoxyribose (a deoxyribonucleoside).
Synonyms:exact_synonym: nucleoside anabolism;   nucleoside biosynthesis;   nucleoside formation;   nucleoside synthesis


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adenosine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5e 5' nucleotidase, ecto acts_upstream_of_or_within
involved_in		 ISO
IMP		 (PMID:16547283) RGD
MGI		 PMID:16547283 PMID:30269308 GO_REF:0000096 MGI:4417868 RGD:152995394 NCBI chr 9:88,209,662...88,254,142
Ensembl chr 9:88,209,250...88,254,145 		JBrowse link
inosine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase involved_in
acts_upstream_of_or_within		 IDA
IBA
IMP
ISO		 (MGI:4835158|PMID:8672487)
(PMID:1618849), (PMID:2015347), (PMID:7592575), (PMID:8663040), (PMID:8894685), (PMID:9272950)
(PMID:7731963), (PMID:9272950)
(PMID:8663040)
(PMID:10720488)		 UniProt
GO_Central
MGI		 PMID:1618849 PMID:2015347 PMID:7592575 PMID:7731963 PMID:8663040 More... GO_REF:0000008 GO_REF:0000033 MGI:4835158 NCBI chr 2:163,565,703...163,592,154
Ensembl chr 2:163,568,504...163,592,159 		JBrowse link
G Adal adenosine deaminase-like involved_in IBA GO_Central GO_REF:0000033 NCBI chr 2:120,970,525...120,989,921
Ensembl chr 2:120,970,909...120,987,161 		JBrowse link
G Ak1 adenylate kinase 1 involved_in ISO RGD
MGI		 PMID:19049516 GO_REF:0000096 MGI:4417868 RGD:5134369 NCBI chr 2:32,511,770...32,525,070
Ensembl chr 2:32,511,770...32,525,070 		JBrowse link
nucleoside salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctd dCMP deaminase involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 8:48,552,127...48,594,702
Ensembl chr 8:48,552,127...48,606,268 		JBrowse link
G Dnph1 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr17:46,807,715...46,810,544
Ensembl chr17:46,807,637...46,810,550 		JBrowse link
G Qng1 Q-nucleotide N-glycosylase 1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr13:58,527,860...58,533,039
Ensembl chr13:58,527,631...58,533,039 		JBrowse link
purine ribonucleoside salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adk adenosine kinase acts_upstream_of_or_within IDA (PMID:14736855) MGI PMID:14736855 NCBI chr14:21,102,622...21,498,637
Ensembl chr14:21,102,642...21,498,637 		JBrowse link
G Aprt adenine phosphoribosyl transferase acts_upstream_of_or_within IGI
IMP		 (PMID:8485579) MGI PMID:8485579 NCBI chr 8:123,301,376...123,303,646
Ensembl chr 8:123,301,374...123,303,648 		JBrowse link
G Hprt1 hypoxanthine phosphoribosyltransferase 1 involved_in
acts_upstream_of_or_within		 ISO
IGI
IMP		 (PMID:8485579)
(PMID:10037486), (PMID:12944494), (PMID:8485579), (PMID:8492116)		 MGI PMID:8485579 PMID:8492116 PMID:10037486 PMID:12944494 GO_REF:0000119 MGI:4834177 NCBI chr  X:52,076,955...52,110,537
Ensembl chr  X:52,077,014...52,110,536 		JBrowse link
G Mtap methylthioadenosine phosphorylase acts_upstream_of_or_within IEA UniProt GO_REF:0000043 MGI:1354194 NCBI chr 4:89,055,607...89,099,327
Ensembl chr 4:89,055,359...89,099,318 		JBrowse link
G Pgm2 phosphoglucomutase 2 involved_in IBA GO_Central GO_REF:0000033 NCBI chr 5:64,250,258...64,285,698
Ensembl chr 5:64,250,293...64,285,694 		JBrowse link
G Pnp purine-nucleoside phosphorylase acts_upstream_of_or_within IEA UniProt GO_REF:0000043 MGI:1354194 NCBI chr14:51,181,760...51,190,869
Ensembl chr14:51,168,539...51,190,869 		JBrowse link
thymidine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dtymk deoxythymidylate kinase involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 1:93,720,298...93,730,246
Ensembl chr 1:93,720,298...93,729,656 		JBrowse link
G Tk1 thymidine kinase 1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr11:117,706,345...117,716,913
Ensembl chr11:117,706,352...117,716,918 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28573
    metabolic process 11001
      biosynthetic process 7873
        small molecule biosynthetic process 623
          nucleobase-containing small molecule biosynthetic process 15
            nucleoside biosynthetic process 15
              deoxyribonucleoside biosynthetic process + 2
              nucleoside salvage + 9
              purine nucleoside biosynthetic process + 10
              pyridine nucleoside biosynthetic process + 0
              pyrimidine nucleoside biosynthetic process + 2
              ribonucleoside biosynthetic process + 10
Path 2
Term Annotations click to browse term
  biological_process 28573
    metabolic process 11001
      biosynthetic process 7873
        organic substance biosynthetic process 7809
          organic cyclic compound biosynthetic process 3858
            nucleobase-containing compound biosynthetic process 3600
              nucleobase-containing small molecule biosynthetic process 15
                nucleoside biosynthetic process 15
                  deoxyribonucleoside biosynthetic process + 2
                  nucleoside salvage + 9
                  purine nucleoside biosynthetic process + 10
                  pyridine nucleoside biosynthetic process + 0
                  pyrimidine nucleoside biosynthetic process + 2
                  ribonucleoside biosynthetic process + 10
paths to the root