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ONTOLOGY REPORT - ANNOTATIONS

Term:nucleoside biosynthetic process
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Accession:GO:0009163 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of any one of a family of organic molecules consisting of a purine or pyrimidine base covalently bonded to a sugar ribose (a ribonucleoside) or deoxyribose (a deoxyribonucleoside).
Synonyms:exact_synonym: nucleoside anabolism;   nucleoside biosynthesis;   nucleoside formation;   nucleoside synthesis


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adenosine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5e 5' nucleotidase, ecto involved_in
acts_upstream_of_or_within		 IEA
ISO
IMP		 GO_REF:0000107
MGI:3522017 (PMID:16547283)		 Ensembl
RGD		 PMID:16547283 PMID:30269308 GO_REF:0000107, RGD:152995394 NCBI chr 8:89,271,046...89,314,918
Ensembl chr 8:89,270,696...89,314,881 		JBrowse link
inosine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase involved_in
acts_upstream_of_or_within		 ISS
ISO
IEA
IBA		 GO_REF:0000024
(MGI:4835158|PMID:8672487)
(PMID:8894685)
GO_REF:0000107
GO_REF:0000033
MGI:1857117|MGI:2681791|MGI:2683027 (PMID:10720488), (PMID:1618849), (PMID:2015347), (PMID:7592575), (PMID:7731963), (PMID:8663040), (PMID:8894685), (PMID:9272950)		 UniProt
RGD
Ensembl
GO_Central		 PMID:1618849 PMID:2015347 PMID:7592575 PMID:7731963 PMID:8663040 More... GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 MGI:4835158 NCBI chr 3:152,398,745...152,422,854
Ensembl chr 3:152,398,747...152,447,088 		JBrowse link
G Ak1 adenylate kinase 1 IDA RGD PMID:19049516 RGD:5134369 NCBI chr 3:15,912,431...15,923,045
Ensembl chr 3:15,912,485...15,923,041 		JBrowse link
nucleoside salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctd dCMP deaminase involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:33833118)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:33833118 GO_REF:0000024 GO_REF:0000107 NCBI chr16:44,066,952...44,098,654
Ensembl chr16:44,055,128...44,098,446 		JBrowse link
G Dnph1 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 involved_in ISS
ISO		 GO_REF:0000024
(PMID:33833118)		 UniProt
RGD		 PMID:33833118 GO_REF:0000024 NCBI chr 9:14,481,296...14,484,034
Ensembl chr 9:14,481,066...14,484,022 		JBrowse link
G Qng1 Q-nucleotide N-glycosylase 1 involved_in ISO (PMID:36610787) RGD PMID:36610787 NCBI chr17:6,281,377...6,288,976
Ensembl chr17:6,281,400...6,288,975 		JBrowse link
purine ribonucleoside salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adk adenosine kinase acts_upstream_of_or_within
involved_in		 NAS
ISO
IEA		 (PMID:14736855)
GO_REF:0000043
GO_REF:0000107		 RGD
UniProt
Ensembl		 PMID:14736855 PMID:8917457 GO_REF:0000043 GO_REF:0000107, RGD:631740 NCBI chr15:2,863,241...3,246,453
Ensembl chr15:2,863,244...3,246,510 		JBrowse link
G Aprt adenine phosphoribosyl transferase involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:96217 (PMID:8485579)		 Ensembl
RGD		 PMID:8485579 GO_REF:0000107 NCBI chr19:50,626,201...50,628,491
Ensembl chr19:50,626,202...50,628,431 		JBrowse link
G Hprt1 hypoxanthine phosphoribosyltransferase 1 involved_in
acts_upstream_of_or_within		 ISO
IEA		 (PMID:9824441)
MGI:1857299|MGI:88061 (PMID:10037486), (PMID:12944494), (PMID:8485579), (PMID:8492116)
GO_REF:0000107
GO_REF:0000043		 RGD
Ensembl
UniProt		 PMID:8485579 PMID:8492116 PMID:9824441 PMID:10037486 PMID:12944494 GO_REF:0000043 GO_REF:0000107 NCBI chr  X:132,736,175...132,768,149
Ensembl chr  X:132,736,096...132,768,154 		JBrowse link
G Mtap methylthioadenosine phosphorylase involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:103,874,460...103,920,684
Ensembl chr 5:103,873,020...103,939,406 		JBrowse link
G Pgm2 phosphoglucomutase 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr14:44,166,314...44,199,828
Ensembl chr14:44,164,425...44,199,967 		JBrowse link
G Pnp purine nucleoside phosphorylase involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr15:24,170,607...24,178,269
Ensembl chr15:24,170,602...24,203,986 		JBrowse link
G Prtfdc1 phosphoribosyl transferase domain containing 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr17:83,549,608...83,654,517
Ensembl chr17:83,548,803...83,655,179 		JBrowse link
queuosine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Qtrt1 queuine tRNA-ribosyltransferase catalytic subunit 1 TAS RGD PMID:6986171 RGD:724772 NCBI chr 8:19,965,801...19,973,843
Ensembl chr 8:19,966,336...19,973,837 		JBrowse link
thymidine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dtymk deoxythymidylate kinase involved_in ISO (PMID:12614151) RGD PMID:12614151 NCBI chr 9:94,315,552...94,324,386
Ensembl chr 9:94,315,552...94,324,870 		JBrowse link
G Tk1 thymidine kinase 1 involved_in ISO (PMID:14697231) RGD PMID:14697231 NCBI chr10:103,034,755...103,046,125
Ensembl chr10:103,031,521...103,046,920 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20115
    metabolic process 12289
      biosynthetic process 8418
        small molecule biosynthetic process 629
          nucleobase-containing small molecule biosynthetic process 16
            nucleoside biosynthetic process 16
              deoxyribonucleoside biosynthetic process + 2
              nucleoside salvage + 10
              purine nucleoside biosynthetic process + 10
              pyridine nucleoside biosynthetic process + 0
              pyrimidine nucleoside biosynthetic process + 2
              ribonucleoside biosynthetic process + 11
Path 2
Term Annotations click to browse term
  biological_process 20115
    metabolic process 12289
      primary metabolic process 10923
        nucleobase-containing compound metabolic process 5736
          nucleobase-containing small molecule metabolic process 702
            nucleobase-containing small molecule biosynthetic process 16
              nucleoside biosynthetic process 16
                deoxyribonucleoside biosynthetic process + 2
                nucleoside salvage + 10
                purine nucleoside biosynthetic process + 10
                pyridine nucleoside biosynthetic process + 0
                pyrimidine nucleoside biosynthetic process + 2
                ribonucleoside biosynthetic process + 11
paths to the root