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ONTOLOGY REPORT - ANNOTATIONS


Term:deoxyribonucleoside monophosphate metabolic process
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Accession:GO:0009162 term browser browse the term
Definition:The chemical reactions and pathways involving a deoxyribonucleoside monophosphate, a compound consisting of a nucleobase linked to a deoxyribose sugar esterified with phosphate on the sugar.
Synonyms:exact_synonym: deoxyribonucleoside monophosphate metabolism


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dAMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dck deoxycytidine kinase involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr14:20,935,442...20,952,939
Ensembl chr14:20,935,369...20,953,095
JBrowse link
dAMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase ISO
IEA
MGI:1857117 (MGI:3640719|PMID:10720488)
GO_REF:0000107
RGD
Ensembl
PMID:10720488 GO_REF:0000107 MGI:3640719 NCBI chr 3:160,115,840...160,139,947
Ensembl chr 3:160,115,842...160,139,947
JBrowse link
G Nt5c1a 5'-nucleotidase, cytosolic IA involved_in ISO
IEA
(PMID:11133996)
GO_REF:0000107
RGD
Ensembl
PMID:11133996 GO_REF:0000107 NCBI chr 5:140,888,862...140,909,322
Ensembl chr 5:140,888,973...140,904,207
JBrowse link
G Pnp purine nucleoside phosphorylase involved_in IEA
ISO
GO_REF:0000107
(PMID:6771276)
Ensembl
RGD
PMID:6771276 GO_REF:0000107 NCBI chr15:27,875,883...27,883,566
Ensembl chr15:27,875,911...27,883,350
JBrowse link
G Uox urate oxidase involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 2:252,452,282...252,488,497
Ensembl chr 2:252,452,269...252,488,396
JBrowse link
G Urad ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase ISO (MGI:3665448|PMID:16462750) RGD PMID:16462750 MGI:3665448 NCBI chr12:9,446,808...9,456,777
Ensembl chr12:9,446,940...9,455,673
JBrowse link
dCMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase ISO (MGI:53656|PMID:5472365) RGD PMID:5472365 MGI:53656 NCBI chr 2:221,823,692...222,694,627
Ensembl chr 2:221,823,687...222,694,627
JBrowse link
G Dpys dihydropyrimidinase ISO (MGI:53656|PMID:5472365) RGD PMID:5472365 MGI:53656 NCBI chr 7:78,769,918...78,847,941
Ensembl chr 7:78,769,807...78,847,974
JBrowse link
G Nt5c 5', 3'-nucleotidase, cytosolic ISO (MGI:55510|PMID:6301357) RGD PMID:6301357 MGI:55510 NCBI chr10:104,052,807...104,054,805
Ensembl chr10:104,052,831...104,054,805
JBrowse link
G Ubp1 upstream binding protein 1 ISO (MGI:53656|PMID:5472365) RGD PMID:5472365 MGI:53656 NCBI chr 8:122,196,576...122,241,368
Ensembl chr 8:122,197,027...122,240,357
JBrowse link
G Upb1 beta-ureidopropionase 1 ISO (MGI:53656|PMID:5472365) RGD PMID:5472365 MGI:53656 NCBI chr20:14,167,383...14,193,724
Ensembl chr20:14,167,586...14,193,690
JBrowse link
G Upp1 uridine phosphorylase 1 ISO (MGI:73237|PMID:7744869) RGD PMID:7744869 MGI:73237 NCBI chr14:89,314,234...89,334,060
Ensembl chr14:89,314,176...89,334,276
JBrowse link
G Upp2 uridine phosphorylase 2 involved_in ISO
IEA
(PMID:12849978)
GO_REF:0000107
RGD
Ensembl
PMID:12849978 GO_REF:0000107 NCBI chr 3:44,806,106...44,846,464
Ensembl chr 3:44,806,106...44,846,464
JBrowse link
deoxyribonucleoside monophosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dck deoxycytidine kinase involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr14:20,935,442...20,952,939
Ensembl chr14:20,935,369...20,953,095
JBrowse link
G Dguok deoxyguanosine kinase involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 4:115,180,433...115,208,061
Ensembl chr 4:115,180,433...115,208,061
JBrowse link
G Tk1 thymidine kinase 1 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:106,817,556...106,828,888
Ensembl chr10:106,817,601...106,828,884
JBrowse link
G Tk2 thymidine kinase 2 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr19:917,203...939,236
Ensembl chr19:917,203...939,221
JBrowse link
deoxyribonucleoside monophosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnph1 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 involved_in IDA
IBA
ISO
PMID:17234634
PMID:21873635
(PMID:25108359)
RGD PMID:25108359, PMID:17234634, PMID:21873635, PMID:17234634, PMID:21873635 RGD:8553712, RGD:13792537, RGD:8553712, RGD:13792537 NCBI chr 9:16,845,764...16,848,514
Ensembl chr 9:16,845,525...16,848,503
JBrowse link
dGMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gda guanine deaminase involved_in ISO
IEA
(MGI:6478860|PMID:8064675)
GO_REF:0000107
RGD
Ensembl
PMID:8064675 GO_REF:0000107 MGI:6478860 NCBI chr 1:238,982,542...239,057,663
Ensembl chr 1:238,982,392...239,057,732
JBrowse link
G Nt5c 5', 3'-nucleotidase, cytosolic ISO
IEA
(MGI:1353788|PMID:10681516)
GO_REF:0000107
RGD
Ensembl
PMID:10681516 GO_REF:0000107 MGI:1353788 NCBI chr10:104,052,807...104,054,805
Ensembl chr10:104,052,831...104,054,805
JBrowse link
G Nt5c2 5'-nucleotidase, cytosolic II ISO (MGI:6478530|PMID:5560407) RGD PMID:5560407 MGI:6478530 NCBI chr 1:266,652,966...266,782,935
Ensembl chr 1:266,659,519...266,782,910
JBrowse link
G Uox urate oxidase involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 2:252,452,282...252,488,497
Ensembl chr 2:252,452,269...252,488,396
JBrowse link
G Urad ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase ISO (MGI:3665448|PMID:16462750) RGD PMID:16462750 MGI:3665448 NCBI chr12:9,446,808...9,456,777
Ensembl chr12:9,446,940...9,455,673
JBrowse link
G Xdh xanthine dehydrogenase ISO
IEA
(MGI:6306257|PMID:30936145), (MGI:6478097|PMID:29895374), (MGI:6478533|PMID:8226898)
GO_REF:0000107
RGD
Ensembl
PMID:8226898 PMID:29895374 PMID:30936145 GO_REF:0000107 MGI:6306257 MGI:6478097 MGI:6478533 NCBI chr 6:25,149,570...25,211,273
Ensembl chr 6:25,149,235...25,211,494
JBrowse link
dGMP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Guk1 guanylate kinase 1 IDA RGD PMID:4307347 RGD:5147877 NCBI chr10:45,535,617...45,552,455
Ensembl chr10:45,535,627...45,543,897
JBrowse link
dTMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctd dCMP deaminase involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr16:47,177,144...47,222,850
Ensembl chr16:47,177,145...47,208,110
JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 ISO (MGI:3849912|PMID:19513116) RGD PMID:19513116 MGI:3849912 NCBI chr10:47,030,813...47,059,216
Ensembl chr10:47,031,050...47,059,216
JBrowse link
G Tyms thymidylate synthetase involved_in IDA
IBA
ISO
PMID:21873635
(PMID:11278511), (PMID:15093541), (PMID:8845352)
RGD PMID:8845352 PMID:11278511 PMID:15093541, PMID:9894005, PMID:21873635, PMID:21873635 RGD:1545055, RGD:13792537, RGD:13792537 NCBI chr 9:121,918,875...121,931,564
Ensembl chr 9:121,918,947...121,931,564
JBrowse link
dTMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5c 5', 3'-nucleotidase, cytosolic ISO
IEA
(MGI:55510|PMID:6301357)
GO_REF:0000107
RGD
Ensembl
PMID:6301357 GO_REF:0000107 MGI:55510 NCBI chr10:104,052,807...104,054,805
Ensembl chr10:104,052,831...104,054,805
JBrowse link
G Tymp thymidine phosphorylase ISO
IEA
MGI:2183547 (MGI:2183137|PMID:12077348)
GO_REF:0000107
RGD
Ensembl
PMID:12077348 GO_REF:0000107 MGI:2183137 NCBI chr 7:130,342,481...130,347,845
Ensembl chr 7:130,342,483...130,347,587
JBrowse link
G Upp1 uridine phosphorylase 1 ISO
IEA
MGI:3699164 (MGI:2183137|PMID:12077348)
GO_REF:0000107
RGD
Ensembl
PMID:12077348 GO_REF:0000107 MGI:2183137 NCBI chr14:89,314,234...89,334,060
Ensembl chr14:89,314,176...89,334,276
JBrowse link
dUMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07001512.1 involved_in IEA
IBA
GO_REF:0000041
PMID:21873635
UniProt PMID:21873635, PMID:21873635 GO_REF:0000041, RGD:13792537, RGD:13792537 Ensembl chr 1:48,565,160...48,565,711 JBrowse link
G Dctd dCMP deaminase involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr16:47,177,144...47,222,850
Ensembl chr16:47,177,145...47,208,110
JBrowse link
G Dut deoxyuridine triphosphatase involved_in IDA
IEA
IBA
GO_REF:0000041
PMID:21873635
UniProt PMID:3032103, PMID:21873635, PMID:21873635, PMID:1315924 GO_REF:0000041, RGD:2300191, RGD:13792537, RGD:13792537, RGD:2301218 NCBI chr 3:117,514,399...117,525,450
Ensembl chr 3:117,514,444...117,525,446
JBrowse link
dUMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase ISO
IEA
(MGI:53656|PMID:5472365)
GO_REF:0000107
RGD
Ensembl
PMID:5472365 GO_REF:0000107 MGI:53656 NCBI chr 2:221,823,692...222,694,627
Ensembl chr 2:221,823,687...222,694,627
JBrowse link
G Dpys dihydropyrimidinase ISO
IEA
(MGI:53656|PMID:5472365)
GO_REF:0000107
RGD
Ensembl
PMID:5472365 GO_REF:0000107 MGI:53656 NCBI chr 7:78,769,918...78,847,941
Ensembl chr 7:78,769,807...78,847,974
JBrowse link
G Nt5c 5', 3'-nucleotidase, cytosolic ISO
IEA
(MGI:1353788|PMID:10681516)
GO_REF:0000107
RGD
Ensembl
PMID:10681516 GO_REF:0000107 MGI:1353788 NCBI chr10:104,052,807...104,054,805
Ensembl chr10:104,052,831...104,054,805
JBrowse link
G Nt5m 5',3'-nucleotidase, mitochondrial ISO (MGI:2388903|PMID:12234672) RGD PMID:12234672 MGI:2388903 NCBI chr10:46,216,494...46,244,478
Ensembl chr10:46,216,884...46,243,077
JBrowse link
G Upb1 beta-ureidopropionase 1 involved_in ISO
IEA
(MGI:53656|PMID:5472365)
GO_REF:0000107
RGD
Ensembl
PMID:5472365 GO_REF:0000107 MGI:53656 NCBI chr20:14,167,383...14,193,724
Ensembl chr20:14,167,586...14,193,690
JBrowse link
G Upp1 uridine phosphorylase 1 ISO (MGI:6478539|PMID:14154460) RGD PMID:14154460 MGI:6478539 NCBI chr14:89,314,234...89,334,060
Ensembl chr14:89,314,176...89,334,276
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20078
    metabolic process 12140
      organic substance metabolic process 11646
        organophosphate metabolic process 956
          nucleoside phosphate metabolic process 526
            nucleoside monophosphate metabolic process 86
              deoxyribonucleoside monophosphate metabolic process 28
                deoxyribonucleoside monophosphate biosynthetic process + 9
                deoxyribonucleoside monophosphate catabolic process + 18
                purine deoxyribonucleoside monophosphate metabolic process + 11
                pyrimidine deoxyribonucleoside monophosphate metabolic process + 14
Path 2
Term Annotations click to browse term
  biological_process 20078
    metabolic process 12140
      nitrogen compound metabolic process 10305
        cellular nitrogen compound metabolic process 6738
          nucleobase-containing compound metabolic process 5512
            nucleobase-containing small molecule metabolic process 598
              nucleoside phosphate metabolic process 526
                nucleoside monophosphate metabolic process 86
                  deoxyribonucleoside monophosphate metabolic process 28
                    deoxyribonucleoside monophosphate biosynthetic process + 9
                    deoxyribonucleoside monophosphate catabolic process + 18
                    purine deoxyribonucleoside monophosphate metabolic process + 11
                    pyrimidine deoxyribonucleoside monophosphate metabolic process + 14
paths to the root