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ONTOLOGY REPORT - ANNOTATIONS


Term:deoxyribonucleoside monophosphate biosynthetic process
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Accession:GO:0009157 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of a deoxyribonucleoside monophosphate, a compound consisting of a nucleobase linked to a deoxyribose sugar esterified with phosphate on the sugar.
Synonyms:exact_synonym: deoxyribonucleoside monophosphate anabolism;   deoxyribonucleoside monophosphate biosynthesis;   deoxyribonucleoside monophosphate formation;   deoxyribonucleoside monophosphate synthesis



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deoxyribonucleoside monophosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dguok deoxyguanosine kinase involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 4:115,987,101...116,014,733
Ensembl chr 4:115,979,094...116,014,733
JBrowse link
G Tk1 thymidine kinase 1 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:103,034,755...103,046,125
Ensembl chr10:103,031,521...103,046,920
JBrowse link
G Tk2 thymidine kinase 2 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr19:708,859...731,786
Ensembl chr19:708,891...730,924
JBrowse link
dAMP salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adk adenosine kinase involved_in ISO
IEA
(MGI:6717101|PMID:2835956)
GO_REF:0000107
RGD
Ensembl
PMID:2835956 GO_REF:0000107 MGI:6717101 NCBI chr15:2,863,241...3,246,453
Ensembl chr15:2,863,244...3,246,510
JBrowse link
G Dck deoxycytidine kinase involved_in ISO
IEA
(MGI:6717103|PMID:8748457)
GO_REF:0000107
RGD
Ensembl
PMID:8748457 GO_REF:0000107 MGI:6717103 NCBI chr14:19,305,218...19,326,247
Ensembl chr14:19,305,218...19,326,247
JBrowse link
G Dguok deoxyguanosine kinase involved_in ISO
IEA
(PMID:19221117)
GO_REF:0000107
RGD
Ensembl
PMID:19221117 GO_REF:0000107 NCBI chr 4:115,987,101...116,014,733
Ensembl chr 4:115,979,094...116,014,733
JBrowse link
dTMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctd dCMP deaminase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:44,066,952...44,098,654
Ensembl chr16:44,055,128...44,098,446
JBrowse link
G Dut deoxyuridine triphosphatase involved_in ISO (PMID:10952785), (PMID:15322254) RGD PMID:10952785 PMID:15322254 NCBI chr 3:112,498,864...112,509,994
Ensembl chr 3:112,498,982...112,510,771
JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 involved_in ISO (MGI:3849912|PMID:19513116) RGD PMID:19513116 MGI:3849912 NCBI chr10:45,468,698...45,497,820
Ensembl chr10:45,468,700...45,497,820
JBrowse link
G Tyms thymidylate synthetase involved_in IDA
IBA
ISO
PMID:21873635
(MGI:5300404|PMID:22057276)
(PMID:11278511), (PMID:15093541), (PMID:8845352)
RGD PMID:8845352 PMID:11278511 PMID:15093541 PMID:22057276 PMID:9894005 More... MGI:5300404, RGD:1545055, RGD:13792537 NCBI chr 9:113,313,454...113,329,551
Ensembl chr 9:113,313,452...113,329,536
JBrowse link
dUMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07001512.1 involved_in IBA
IEA
PMID:21873635
GO_REF:0000041
UniProt PMID:21873635 GO_REF:0000041, RGD:13792537 Ensembl chr 1:48,369,044...48,369,595 JBrowse link
G Dctd dCMP deaminase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:44,066,952...44,098,654
Ensembl chr16:44,055,128...44,098,446
JBrowse link
G Dut deoxyuridine triphosphatase involved_in IDA
IEA
IBA
GO_REF:0000041
PMID:21873635
UniProt
RGD
PMID:3032103 PMID:21873635 PMID:1315924 GO_REF:0000041, RGD:2300191, RGD:13792537, RGD:2301218 NCBI chr 3:112,498,864...112,509,994
Ensembl chr 3:112,498,982...112,510,771
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19512
    metabolic process 11791
      organic substance metabolic process 11326
        organophosphate metabolic process 939
          nucleoside phosphate metabolic process 508
            nucleoside monophosphate metabolic process 81
              nucleoside monophosphate biosynthetic process 48
                deoxyribonucleoside monophosphate biosynthetic process 10
                  purine deoxyribonucleoside monophosphate biosynthetic process + 3
                  pyrimidine deoxyribonucleoside monophosphate biosynthetic process + 5
Path 2
Term Annotations click to browse term
  biological_process 19512
    metabolic process 11791
      cellular metabolic process 10675
        cellular aromatic compound metabolic process 5675
          nucleobase-containing compound metabolic process 5452
            nucleobase-containing small molecule metabolic process 576
              nucleoside phosphate metabolic process 508
                nucleoside monophosphate metabolic process 81
                  nucleoside monophosphate biosynthetic process 48
                    deoxyribonucleoside monophosphate biosynthetic process 10
                      purine deoxyribonucleoside monophosphate biosynthetic process + 3
                      pyrimidine deoxyribonucleoside monophosphate biosynthetic process + 5
paths to the root