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ONTOLOGY REPORT - ANNOTATIONS


Term:purine ribonucleotide catabolic process
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Accession:GO:0009154 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of a purine ribonucleotide, a compound consisting of ribonucleoside (a purine base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
Synonyms:exact_synonym: purine ribonucleotide breakdown;   purine ribonucleotide catabolism;   purine ribonucleotide degradation


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purine ribonucleotide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hint1 histidine triad nucleotide binding protein 1 ISO
IBA
(MGI:MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr11:54,866,383...54,870,506
Ensembl chr11:54,866,383...54,870,501
JBrowse link
acetyl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acat1 acetyl-Coenzyme A acetyltransferase 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 9:53,580,522...53,610,350
Ensembl chr 9:53,580,522...53,610,382
JBrowse link
G Nudt7 nudix (nucleoside diphosphate linked moiety X)-type motif 7 IDA (MGI:MGI:2137102|PMID:11415433), (MGI:MGI:6450264|PMID:18799520) UniProt PMID:11415433, PMID:18799520 MGI:MGI:2137102, MGI:MGI:6450264 NCBI chr 8:114,133,574...114,154,731
Ensembl chr 8:114,133,557...114,154,739
JBrowse link
adenosine 5'-(hexahydrogen pentaphosphate) catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt10 nudix (nucleoside diphosphate linked moiety X)-type motif 10 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr  X:6,168,696...6,173,009
Ensembl chr  X:6,168,696...6,173,015
Ensembl chr  X:6,168,696...6,173,015
JBrowse link
G Nudt11 nudix (nucleoside diphosphate linked moiety X)-type motif 11 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr  X:6,047,471...6,054,751
Ensembl chr  X:6,047,453...6,055,110
JBrowse link
G Nudt3 nudix (nucleotide diphosphate linked moiety X)-type motif 3 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr17:27,579,382...27,623,452
Ensembl chr17:27,579,382...27,623,495
JBrowse link
G Nudt4 nudix (nucleoside diphosphate linked moiety X)-type motif 4 IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr10:95,547,007...95,564,146
Ensembl chr10:95,547,007...95,564,146
JBrowse link
ADP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt9 nudix (nucleoside diphosphate linked moiety X)-type motif 9 IDA (MGI:MGI:2158549|PMID:11825615) MGI PMID:11825615 MGI:MGI:2158549 NCBI chr 5:104,045,538...104,065,378
Ensembl chr 5:104,046,306...104,065,379
JBrowse link
AMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5e 5' nucleotidase, ecto IMP
IBA
ISO
(MGI:MGI:3770326|PMID:16547283)
(MGI:MGI:6201960|PMID:21873635)
MGI
GO_Central
RGD
PMID:16547283, PMID:21873635 GO_REF:0000096, MGI:MGI:3770326, MGI:MGI:4417868, MGI:MGI:6201960 NCBI chr 9:88,327,609...88,372,089
Ensembl chr 9:88,327,197...88,372,092
JBrowse link
butyryl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt7 nudix (nucleoside diphosphate linked moiety X)-type motif 7 IDA (MGI:MGI:6450264|PMID:18799520) UniProt PMID:18799520 MGI:MGI:6450264 NCBI chr 8:114,133,574...114,154,731
Ensembl chr 8:114,133,557...114,154,739
JBrowse link
cAMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pde4d phosphodiesterase 4D, cAMP specific IBA (MGI:MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:MGI:6201960 NCBI chr13:108,654,177...109,955,969
Ensembl chr13:108,449,948...109,953,461
JBrowse link
cGMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pde1a phosphodiesterase 1A, calmodulin-dependent ISO RGD GO_REF:0000096, MGI:MGI:4417868 NCBI chr 2:79,834,453...80,196,522
Ensembl chr 2:79,834,453...80,129,458
JBrowse link
G Pde2a phosphodiesterase 2A, cGMP-stimulated ISO
IBA
IMP
(MGI:MGI:6201960|PMID:21873635)
(MGI:MGI:4420377|PMID:19632989)
MGI
GO_Central
UniProtKB
PMID:19632989, PMID:21873635 GO_REF:0000096, MGI:MGI:4420377, MGI:MGI:4834177, MGI:MGI:6201960 NCBI chr 7:101,421,691...101,512,829
Ensembl chr 7:101,410,886...101,512,819
Ensembl chr 7:101,410,886...101,512,819
JBrowse link
G Pde5a phosphodiesterase 5A, cGMP-specific IDA (MGI:MGI:2450821|PMID:12554648) MGI PMID:12554648 MGI:MGI:2450821 NCBI chr 3:122,729,158...122,859,374
Ensembl chr 3:122,728,947...122,859,374
JBrowse link
G Pde9a phosphodiesterase 9A IMP
IBA
ISO
IDA
(MGI:MGI:5634842|PMID:25799991)
(MGI:MGI:6201960|PMID:21873635)
(MGI:MGI:1266874|PMID:9624145)
UniProtKB
GO_Central
MGI
PMID:9624145, PMID:21873635, PMID:25799991 GO_REF:0000096, MGI:MGI:1266874, MGI:MGI:4834177, MGI:MGI:5634842, MGI:MGI:6201960 NCBI chr17:31,386,105...31,476,309
Ensembl chr17:31,386,210...31,476,310
JBrowse link
coenzyme A catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt7 nudix (nucleoside diphosphate linked moiety X)-type motif 7 IBA
IDA
(MGI:MGI:6201960|PMID:21873635)
(MGI:MGI:2137102|PMID:11415433), (MGI:MGI:6450264|PMID:18799520)
GO_Central
MGI
PMID:11415433, PMID:18799520, PMID:21873635 MGI:MGI:2137102, MGI:MGI:6201960, MGI:MGI:6450264 NCBI chr 8:114,133,574...114,154,731
Ensembl chr 8:114,133,557...114,154,739
JBrowse link
GDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt18 nudix (nucleoside diphosphate linked moiety X)-type motif 18 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr14:70,577,824...70,582,688
Ensembl chr14:70,577,637...70,582,688
JBrowse link
GMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gm13377 predicted gene 13377 NOT ISO (PMID:21054786) UniProtKB PMID:21054786 NCBI chr 2:21,044,809...21,139,682
Ensembl chr 2:21,044,808...21,141,954
JBrowse link
G Gmpr2 guanosine monophosphate reductase 2 ISO (MGI:MGI:2661317|PMID:12669231) MGI PMID:12669231 MGI:MGI:2661317 NCBI chr14:55,672,235...55,687,861
Ensembl chr14:55,671,941...55,679,200
JBrowse link
G Hprt hypoxanthine guanine phosphoribosyl transferase ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr  X:52,988,078...53,021,660
Ensembl chr  X:52,988,137...53,021,659
JBrowse link
IDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt16 nudix (nucleoside diphosphate linked moiety X)-type motif 16 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 9:105,129,332...105,133,133
Ensembl chr 9:105,128,903...105,131,824
JBrowse link
G Nudt9 nudix (nucleoside diphosphate linked moiety X)-type motif 9 IDA (MGI:MGI:2158549|PMID:11825615) MGI PMID:11825615 MGI:MGI:2158549 NCBI chr 5:104,045,538...104,065,378
Ensembl chr 5:104,046,306...104,065,379
JBrowse link
ITP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Itpa inosine triphosphatase (nucleoside triphosphate pyrophosphatase) IMP (MGI:MGI:5009783|PMID:20081199) MGI PMID:20081199 MGI:MGI:5009783 NCBI chr 2:130,664,692...130,681,614
Ensembl chr 2:130,667,610...130,681,614
JBrowse link
long-chain fatty-acyl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acot7 acyl-CoA thioesterase 7 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 4:152,178,100...152,271,855
Ensembl chr 4:152,178,134...152,271,855
JBrowse link
malonyl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mlycd malonyl-CoA decarboxylase IDA
ISO
IBA
(MGI:MGI:5501374|PMID:23746352)
(MGI:MGI:6201960|PMID:21873635)
UniProtKB
MGI
GO_Central
PMID:21873635, PMID:23746352 GO_REF:0000096, MGI:MGI:4834177, MGI:MGI:5501374, MGI:MGI:6201960 NCBI chr 8:119,394,852...119,421,838
Ensembl chr 8:119,394,878...119,411,102
JBrowse link
medium-chain fatty-acyl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acot7 acyl-CoA thioesterase 7 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 4:152,178,100...152,271,855
Ensembl chr 4:152,178,134...152,271,855
JBrowse link
G Nudt7 nudix (nucleoside diphosphate linked moiety X)-type motif 7 IDA (MGI:MGI:6450264|PMID:18799520) UniProt PMID:18799520 MGI:MGI:6450264 NCBI chr 8:114,133,574...114,154,731
Ensembl chr 8:114,133,557...114,154,739
JBrowse link
propionyl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt7 nudix (nucleoside diphosphate linked moiety X)-type motif 7 IDA (MGI:MGI:6450264|PMID:18799520) UniProt PMID:18799520 MGI:MGI:6450264 NCBI chr 8:114,133,574...114,154,731
Ensembl chr 8:114,133,557...114,154,739
JBrowse link
very long-chain fatty-acyl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcd1 ATP-binding cassette, sub-family D (ALD), member 1 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr  X:73,716,597...73,738,534
Ensembl chr  X:73,716,597...73,738,534
JBrowse link
XDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt16 nudix (nucleoside diphosphate linked moiety X)-type motif 16 ISO MGI GO_REF:0000096, MGI:MGI:4834177 NCBI chr 9:105,129,332...105,133,133
Ensembl chr 9:105,128,903...105,131,824
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 23360
    metabolic process 11269
      organic substance metabolic process 10739
        carbohydrate derivative metabolic process 932
          carbohydrate derivative catabolic process 127
            ribonucleotide catabolic process 24
              purine ribonucleotide catabolic process 23
                2-hydroxybenzoyl-CoA catabolic process 0
                ADP catabolic process 1
                AMP catabolic process 1
                GDP catabolic process 1
                GMP catabolic process + 3
                IDP catabolic process 2
                IMP catabolic process 0
                ITP catabolic process 1
                XDP catabolic process 1
                acetyl-CoA catabolic process + 2
                adenosine 5'-(hexahydrogen pentaphosphate) catabolic process 4
                benzoyl-CoA catabolic process 0
                cAMP catabolic process 1
                cGMP catabolic process 4
                coenzyme A catabolic process 1
                fatty-acyl-CoA catabolic process + 3
                guanosine pentaphosphate catabolic process 0
                guanosine tetraphosphate catabolic process 0
                malonyl-CoA catabolic process 1
                succinyl-CoA catabolic process 0
Path 2
Term Annotations click to browse term
  biological_process 23360
    metabolic process 11269
      nitrogen compound metabolic process 9341
        cellular nitrogen compound metabolic process 5964
          nucleobase-containing compound metabolic process 5182
            nucleobase-containing small molecule metabolic process 518
              nucleoside phosphate metabolic process 447
                nucleotide metabolic process 439
                  ribonucleotide metabolic process 343
                    ribonucleotide catabolic process 24
                      purine ribonucleotide catabolic process 23
                        2-hydroxybenzoyl-CoA catabolic process 0
                        ADP catabolic process 1
                        AMP catabolic process 1
                        GDP catabolic process 1
                        GMP catabolic process + 3
                        IDP catabolic process 2
                        IMP catabolic process 0
                        ITP catabolic process 1
                        XDP catabolic process 1
                        acetyl-CoA catabolic process + 2
                        adenosine 5'-(hexahydrogen pentaphosphate) catabolic process 4
                        benzoyl-CoA catabolic process 0
                        cAMP catabolic process 1
                        cGMP catabolic process 4
                        coenzyme A catabolic process 1
                        fatty-acyl-CoA catabolic process + 3
                        guanosine pentaphosphate catabolic process 0
                        guanosine tetraphosphate catabolic process 0
                        malonyl-CoA catabolic process 1
                        succinyl-CoA catabolic process 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.