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ONTOLOGY REPORT - ANNOTATIONS


Term:purine ribonucleotide catabolic process
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Accession:GO:0009154 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of a purine ribonucleotide, a compound consisting of ribonucleoside (a purine base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
Synonyms:exact_synonym: purine ribonucleotide breakdown;   purine ribonucleotide catabolism;   purine ribonucleotide degradation


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purine ribonucleotide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HINT1 histidine triad nucleotide binding protein 1 IDA
IBA
(PMID:16835243)
(PMID:21873635)
UniProtKB
GO_Central
PMID:16835243, PMID:21873635 NCBI chr 5:131,159,027...131,165,256
Ensembl chr 5:131,155,383...131,224,468
Ensembl chr 5:131,155,383...131,224,468
JBrowse link
acetyl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACAT1 acetyl-CoA acetyltransferase 1 IDA (PMID:17371050) BHF-UCL PMID:17371050 NCBI chr11:108,116,705...108,148,822
Ensembl chr11:108,116,695...108,147,603
JBrowse link
G NUDT7 nudix hydrolase 7 ISS UniProtKB GO_REF:0000024 NCBI chr16:77,722,514...77,742,260
Ensembl chr16:77,722,492...77,742,260
JBrowse link
adenosine 5'-(hexahydrogen pentaphosphate) catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NUDT10 nudix hydrolase 10 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:51,332,231...51,337,525
Ensembl chr  X:51,332,231...51,337,525
JBrowse link
G NUDT11 nudix hydrolase 11 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:51,490,011...51,496,592
Ensembl chr  X:51,490,011...51,496,592
JBrowse link
G NUDT3 nudix hydrolase 3 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:34,279,679...34,392,669
Ensembl chr 6:34,279,679...34,392,669
JBrowse link
G NUDT4 nudix hydrolase 4 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:93,377,925...93,408,146
Ensembl chr12:93,377,883...93,408,146
JBrowse link
G NUDT4B nudix hydrolase 4B IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:148,748,774...148,752,415
Ensembl chr 1:148,748,894...148,750,099
JBrowse link
ADP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NUDT9 nudix hydrolase 9 IEA Ensembl GO_REF:0000107 NCBI chr 4:87,420,002...87,459,455
Ensembl chr 4:87,422,573...87,459,455
JBrowse link
AMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMPD3 adenosine monophosphate deaminase 3 TAS (PMID:9291127) PINC PMID:9291127 NCBI chr11:10,450,388...10,507,579
Ensembl chr11:10,308,313...10,507,579
JBrowse link
G NT5E 5'-nucleotidase ecto IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:85,450,083...85,495,784
Ensembl chr 6:85,449,584...85,495,791
JBrowse link
butyryl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NUDT7 nudix hydrolase 7 ISS UniProt GO_REF:0000024 NCBI chr16:77,722,514...77,742,260
Ensembl chr16:77,722,492...77,742,260
JBrowse link
cAMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PDE10A phosphodiesterase 10A IEA UniProtKB GO_REF:0000041 NCBI chr 6:165,327,287...165,988,115
Ensembl chr 6:165,327,287...165,988,078
JBrowse link
G PDE4A phosphodiesterase 4A IEA UniProtKB GO_REF:0000041 NCBI chr19:10,416,773...10,469,631
Ensembl chr19:10,416,773...10,469,630
JBrowse link
G PDE4B phosphodiesterase 4B IEA UniProtKB GO_REF:0000041 NCBI chr 1:65,792,510...66,374,579
Ensembl chr 1:65,792,514...66,374,579
JBrowse link
G PDE4C phosphodiesterase 4C IEA UniProtKB GO_REF:0000041 NCBI chr19:18,207,961...18,248,200
Ensembl chr19:18,208,652...18,248,200
JBrowse link
G PDE4D phosphodiesterase 4D IEA
IBA
IDA
(PMID:21873635)
(PMID:20819076)
UniProtKB
GO_Central
BHF-UCL
PMID:20819076, PMID:21873635 GO_REF:0000041 NCBI chr 5:58,969,038...60,524,329
Ensembl chr 5:58,969,038...60,522,120
JBrowse link
G PDE7A phosphodiesterase 7A IEA UniProtKB GO_REF:0000041 NCBI chr 8:65,714,334...65,842,064
Ensembl chr 8:65,717,510...65,842,322
Ensembl chr 8:65,717,510...65,842,322
JBrowse link
G PDE7B phosphodiesterase 7B IEA UniProtKB GO_REF:0000041 NCBI chr 6:135,851,701...136,195,574
Ensembl chr 6:135,851,701...136,195,574
JBrowse link
G PDE8A phosphodiesterase 8A IEA UniProtKB GO_REF:0000041 NCBI chr15:84,980,467...85,139,142
Ensembl chr15:84,980,440...85,139,145
JBrowse link
G PDE8B phosphodiesterase 8B IEA UniProtKB GO_REF:0000041 NCBI chr 5:77,180,304...77,428,256
Ensembl chr 5:77,086,732...77,427,124
Ensembl chr 5:77,086,732...77,427,124
Ensembl chr 5:77,086,732...77,427,124
JBrowse link
cGMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PDE10A phosphodiesterase 10A IEA UniProtKB GO_REF:0000041 NCBI chr 6:165,327,287...165,988,115
Ensembl chr 6:165,327,287...165,988,078
JBrowse link
G PDE1A phosphodiesterase 1A IEA Ensembl GO_REF:0000107 NCBI chr 2:182,136,453...182,523,375
Ensembl chr 2:182,140,036...182,523,192
JBrowse link
G PDE2A phosphodiesterase 2A IDA
IBA
(PMID:19828435)
(PMID:21873635)
UniProtKB
GO_Central
PMID:19828435, PMID:21873635 NCBI chr11:72,576,141...72,674,422
Ensembl chr11:72,576,141...72,674,591
JBrowse link
G PDE5A phosphodiesterase 5A IEA UniProtKB GO_REF:0000041 NCBI chr 4:119,494,403...119,628,804
Ensembl chr 4:119,494,397...119,628,804
JBrowse link
G PDE9A phosphodiesterase 9A IEA
IBA
IDA
(PMID:21873635)
(PMID:25799991)
UniProtKB
GO_Central
PMID:21873635, PMID:25799991 GO_REF:0000041 NCBI chr21:42,653,621...42,775,509
Ensembl chr21:42,653,621...42,775,509
JBrowse link
coenzyme A catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NUDT7 nudix hydrolase 7 ISS
IBA
(PMID:21873635) UniProtKB
GO_Central
PMID:21873635 GO_REF:0000024 NCBI chr16:77,722,514...77,742,260
Ensembl chr16:77,722,492...77,742,260
JBrowse link
GDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NUDT18 nudix hydrolase 18 IDA (PMID:22556419) UniProtKB PMID:22556419 NCBI chr 8:22,106,872...22,110,355
Ensembl chr 8:22,106,874...22,109,419
JBrowse link
GMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HPRT1 hypoxanthine phosphoribosyltransferase 1 IDA (PMID:19527031) UniProtKB PMID:19527031 NCBI chr  X:134,460,165...134,500,668
Ensembl chr  X:134,460,165...134,520,513
JBrowse link
G PRTFDC1 phosphoribosyl transferase domain containing 1 NOT IDA (PMID:21054786) UniProtKB PMID:21054786 NCBI chr10:24,848,614...24,952,606
Ensembl chr10:24,848,614...24,952,606
JBrowse link
IDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NUDT16 nudix hydrolase 16 IDA (PMID:20385596) UniProtKB PMID:20385596 NCBI chr 3:131,381,671...131,388,830
Ensembl chr 3:131,381,671...131,388,830
JBrowse link
G NUDT9 nudix hydrolase 9 IEA Ensembl GO_REF:0000107 NCBI chr 4:87,420,002...87,459,455
Ensembl chr 4:87,422,573...87,459,455
JBrowse link
ITP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ITPA inosine triphosphatase IEA Ensembl GO_REF:0000107 NCBI chr20:3,208,676...3,227,449
Ensembl chr20:3,208,868...3,223,870
JBrowse link
long-chain fatty-acyl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACOT7 acyl-CoA thioesterase 7 IDA (PMID:10578051) BHF-UCL PMID:10578051 NCBI chr 1:6,264,272...6,393,767
Ensembl chr 1:6,264,269...6,394,391
JBrowse link
malonyl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MLYCD malonyl-CoA decarboxylase IDA
IBA
(PMID:10417274), (PMID:10455107), (PMID:15003260)
(PMID:21873635)
UniProtKB
GO_Central
PMID:10417274, PMID:10455107, PMID:15003260, PMID:21873635 NCBI chr16:83,899,115...83,927,031
Ensembl chr16:83,899,115...83,951,445
JBrowse link
medium-chain fatty-acyl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACOT7 acyl-CoA thioesterase 7 IDA (PMID:10578051) BHF-UCL PMID:10578051 NCBI chr 1:6,264,272...6,393,767
Ensembl chr 1:6,264,269...6,394,391
JBrowse link
G NUDT7 nudix hydrolase 7 ISS UniProt GO_REF:0000024 NCBI chr16:77,722,514...77,742,260
Ensembl chr16:77,722,492...77,742,260
JBrowse link
propionyl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NUDT7 nudix hydrolase 7 ISS UniProt GO_REF:0000024 NCBI chr16:77,722,514...77,742,260
Ensembl chr16:77,722,492...77,742,260
JBrowse link
very long-chain fatty-acyl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABCD1 ATP binding cassette subfamily D member 1 IMP (PMID:23671276) UniProtKB PMID:23671276 NCBI chr  X:153,724,851...153,744,755
Ensembl chr  X:153,724,856...153,744,755
JBrowse link
XDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NUDT16 nudix hydrolase 16 IDA (PMID:20385596) UniProtKB PMID:20385596 NCBI chr 3:131,381,671...131,388,830
Ensembl chr 3:131,381,671...131,388,830
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18626
    metabolic process 12276
      organic substance metabolic process 11712
        carbohydrate derivative metabolic process 1184
          carbohydrate derivative catabolic process 199
            ribonucleotide catabolic process 33
              purine ribonucleotide catabolic process 32
                2-hydroxybenzoyl-CoA catabolic process 0
                ADP catabolic process 1
                AMP catabolic process 2
                GDP catabolic process 1
                GMP catabolic process + 2
                IDP catabolic process 2
                IMP catabolic process 0
                ITP catabolic process 1
                XDP catabolic process 1
                acetyl-CoA catabolic process + 2
                adenosine 5'-(hexahydrogen pentaphosphate) catabolic process 5
                benzoyl-CoA catabolic process 0
                cAMP catabolic process 9
                cGMP catabolic process 5
                coenzyme A catabolic process 1
                fatty-acyl-CoA catabolic process + 3
                guanosine pentaphosphate catabolic process 0
                guanosine tetraphosphate catabolic process 0
                malonyl-CoA catabolic process 1
                succinyl-CoA catabolic process 0
Path 2
Term Annotations click to browse term
  biological_process 18626
    metabolic process 12276
      nitrogen compound metabolic process 10470
        cellular nitrogen compound metabolic process 6754
          nucleobase-containing compound metabolic process 5971
            nucleobase-containing small molecule metabolic process 668
              nucleoside phosphate metabolic process 577
                nucleotide metabolic process 569
                  ribonucleotide metabolic process 448
                    ribonucleotide catabolic process 33
                      purine ribonucleotide catabolic process 32
                        2-hydroxybenzoyl-CoA catabolic process 0
                        ADP catabolic process 1
                        AMP catabolic process 2
                        GDP catabolic process 1
                        GMP catabolic process + 2
                        IDP catabolic process 2
                        IMP catabolic process 0
                        ITP catabolic process 1
                        XDP catabolic process 1
                        acetyl-CoA catabolic process + 2
                        adenosine 5'-(hexahydrogen pentaphosphate) catabolic process 5
                        benzoyl-CoA catabolic process 0
                        cAMP catabolic process 9
                        cGMP catabolic process 5
                        coenzyme A catabolic process 1
                        fatty-acyl-CoA catabolic process + 3
                        guanosine pentaphosphate catabolic process 0
                        guanosine tetraphosphate catabolic process 0
                        malonyl-CoA catabolic process 1
                        succinyl-CoA catabolic process 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.