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ONTOLOGY REPORT - ANNOTATIONS


Term:purine deoxyribonucleotide metabolic process
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Accession:GO:0009151 term browser browse the term
Definition:The chemical reactions and pathways involving purine deoxyribonucleotide, a compound consisting of deoxyribonucleoside (a purine base linked to a deoxyribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
Synonyms:exact_synonym: purine deoxyribonucleotide metabolism



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dADP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt18 nudix hydrolase 18 involved_in ISO
ISS
(PMID:22556419)
GO_REF:0000024
RGD
UniProt
PMID:22556419 GO_REF:0000024 NCBI chr15:45,650,597...45,653,985
Ensembl chr15:45,650,664...45,653,963
JBrowse link
dADP phosphorylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak9 adenylate kinase 9 involved_in ISO (PMID:23416111) RGD PMID:23416111 NCBI chr20:44,724,494...44,941,135
Ensembl chr20:44,724,496...44,941,136
JBrowse link
dAMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dck deoxycytidine kinase involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr14:19,305,218...19,326,247
Ensembl chr14:19,305,218...19,326,247
JBrowse link
dAMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase involved_in ISO MGI:1857117 (MGI:3640719|PMID:10720488) RGD PMID:10720488 MGI:3640719 NCBI chr 3:152,398,745...152,422,854
Ensembl chr 3:152,398,747...152,447,088
JBrowse link
G Nt5c1a 5'-nucleotidase, cytosolic IA involved_in ISO (PMID:11133996) RGD PMID:11133996 NCBI chr 5:135,473,107...135,494,400
Ensembl chr 5:135,473,231...135,499,338
JBrowse link
G Pnp purine nucleoside phosphorylase involved_in ISO (PMID:6771276) RGD PMID:6771276 NCBI chr15:24,170,456...24,178,274
Ensembl chr15:24,170,602...24,203,986
JBrowse link
G Uox urate oxidase involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 2:235,486,867...235,523,053
Ensembl chr 2:235,440,619...235,523,029
JBrowse link
G Urad ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase involved_in ISO (MGI:3665448|PMID:16462750) RGD PMID:16462750 MGI:3665448 NCBI chr12:7,709,233...7,718,925
Ensembl chr12:7,709,312...7,718,923
JBrowse link
G Xdh xanthine dehydrogenase involved_in ISO
IEA
(MGI:6478860|PMID:8064675)
GO_REF:0000107
RGD
Ensembl
PMID:8064675 GO_REF:0000107 MGI:6478860 NCBI chr 6:21,530,463...21,592,172
Ensembl chr 6:21,530,113...21,592,268
JBrowse link
dAMP salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adk adenosine kinase involved_in ISO (MGI:6717101|PMID:2835956) RGD PMID:2835956 MGI:6717101 NCBI chr15:2,863,241...3,246,453
Ensembl chr15:2,863,244...3,246,510
JBrowse link
G Dck deoxycytidine kinase involved_in ISO (MGI:6717103|PMID:8748457) RGD PMID:8748457 MGI:6717103 NCBI chr14:19,305,218...19,326,247
Ensembl chr14:19,305,218...19,326,247
JBrowse link
dATP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adk adenosine kinase involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:3620422|PMID:12163459)
Ensembl
RGD
PMID:12163459 GO_REF:0000107 MGI:3620422 NCBI chr15:2,863,241...3,246,453
Ensembl chr15:2,863,244...3,246,510
JBrowse link
dATP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase acts_upstream_of_or_within ISO MGI:1857117|MGI:2155977|MGI:2683027 (MGI:2155238|PMID:9478961), (MGI:3619310|PMID:14607964), (MGI:72798|PMID:7731963), (MGI:74163|PMID:7670465), (MGI:76875|PMID:7592575) RGD PMID:7592575 PMID:7670465 PMID:7731963 PMID:9478961 PMID:14607964 MGI:2155238 MGI:3619310 MGI:72798 MGI:74163 MGI:76875 NCBI chr 3:152,398,745...152,422,854
Ensembl chr 3:152,398,747...152,447,088
JBrowse link
G Samhd1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 involved_in ISO (PMID:24141705)
(MGI:5828027|PMID:27920203)
RGD PMID:24141705 PMID:27920203 MGI:5828027 NCBI chr 3:145,761,549...145,794,420
Ensembl chr 3:145,761,558...145,794,386
JBrowse link
dATP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak2 adenylate kinase 2 IDA RGD PMID:5010295 RGD:5490216 NCBI chr 5:141,308,650...141,364,633
Ensembl chr 5:141,346,063...141,364,632
JBrowse link
G Ak3 adenylate kinase 3 IDA RGD PMID:5010295 RGD:5490216 NCBI chr 1:226,737,472...226,764,647
Ensembl chr 1:226,739,318...226,764,625
JBrowse link
G Guk1 guanylate kinase 1 IDA RGD PMID:4307347 RGD:5147877 NCBI chr10:43,971,514...43,988,658
Ensembl chr10:43,971,509...43,980,107
JBrowse link
G Oga O-GlcNAcase IMP RGD PMID:17573462 RGD:2305953 NCBI chr 1:244,598,285...244,633,835
Ensembl chr 1:244,598,292...244,634,359
JBrowse link
dGDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Guk1 guanylate kinase 1 involved_in IDA
ISO
(PMID:31201273) RGD PMID:31201273 PMID:4307347 RGD:5147877 NCBI chr10:43,971,514...43,988,658
Ensembl chr10:43,971,509...43,980,107
JBrowse link
dGDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt18 nudix hydrolase 18 involved_in ISO
ISS
(PMID:22556419)
GO_REF:0000024
RGD
UniProt
PMID:22556419 GO_REF:0000024 NCBI chr15:45,650,597...45,653,985
Ensembl chr15:45,650,664...45,653,963
JBrowse link
dGDP phosphorylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak9 adenylate kinase 9 involved_in ISO
IBA
(PMID:23416111)
PMID:21873635
RGD PMID:23416111 PMID:21873635 RGD:13792537 NCBI chr20:44,724,494...44,941,135
Ensembl chr20:44,724,496...44,941,136
JBrowse link
dGMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnph1 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 involved_in IDA PMID:17234634 MGI PMID:17234634 RGD:8553712 NCBI chr 9:14,481,296...14,484,034
Ensembl chr 9:14,481,066...14,484,022
JBrowse link
G Gda guanine deaminase involved_in IEA
ISO
GO_REF:0000107
(MGI:6478860|PMID:8064675)
Ensembl
RGD
PMID:8064675 GO_REF:0000107 MGI:6478860 NCBI chr 1:218,903,045...218,982,360
Ensembl chr 1:218,906,815...218,982,416
JBrowse link
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in ISO (MGI:1353788|PMID:10681516) RGD PMID:10681516 MGI:1353788 NCBI chr10:100,739,591...100,742,276
Ensembl chr10:100,739,588...100,741,954
JBrowse link
G Nt5c1a 5'-nucleotidase, cytosolic IA involved_in ISO (PMID:11133996) RGD PMID:11133996 NCBI chr 5:135,473,107...135,494,400
Ensembl chr 5:135,473,231...135,499,338
JBrowse link
G Nt5c2 5'-nucleotidase, cytosolic II involved_in ISO (MGI:6478530|PMID:5560407) RGD PMID:5560407 MGI:6478530 NCBI chr 1:245,770,993...245,896,925
Ensembl chr 1:245,772,277...245,897,913
JBrowse link
G Uox urate oxidase involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 2:235,486,867...235,523,053
Ensembl chr 2:235,440,619...235,523,029
JBrowse link
G Urad ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase involved_in ISO (MGI:3665448|PMID:16462750) RGD PMID:16462750 MGI:3665448 NCBI chr12:7,709,233...7,718,925
Ensembl chr12:7,709,312...7,718,923
JBrowse link
G Xdh xanthine dehydrogenase involved_in IEA
ISO
GO_REF:0000107
(MGI:6306257|PMID:30936145), (MGI:6478097|PMID:29895374), (MGI:6478533|PMID:8226898)
Ensembl
RGD
PMID:8226898 PMID:29895374 PMID:30936145 GO_REF:0000107 MGI:6306257 MGI:6478097 MGI:6478533 NCBI chr 6:21,530,463...21,592,172
Ensembl chr 6:21,530,113...21,592,268
JBrowse link
dGMP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Guk1 guanylate kinase 1 IDA RGD PMID:4307347 RGD:5147877 NCBI chr10:43,971,514...43,988,658
Ensembl chr10:43,971,509...43,980,107
JBrowse link
dGTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt15 nudix hydrolase 15 involved_in ISO
IBA
(PMID:22556419)
PMID:21873635
RGD PMID:22556419 PMID:21873635 RGD:13792537 NCBI chr15:48,707,776...48,747,363
Ensembl chr15:48,709,700...48,747,363
JBrowse link
G Samhd1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 involved_in IBA
ISO
PMID:21873635
(PMID:24217394)
RGD PMID:24217394 PMID:21873635 RGD:13792537 NCBI chr 3:145,761,549...145,794,420
Ensembl chr 3:145,761,558...145,794,386
JBrowse link
dGTP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dguok deoxyguanosine kinase acts_upstream_of_or_within ISO (MGI:49028|PMID:1664183), (MGI:69194|PMID:7918681) RGD PMID:1664183 PMID:7918681 MGI:49028 MGI:69194 NCBI chr 4:115,987,101...116,014,733
Ensembl chr 4:115,979,094...116,014,733
JBrowse link
dITP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt16 nudix hydrolase 16 acts_upstream_of_or_within ISO MGI:96622 (MGI:5009783|PMID:20081199) RGD PMID:20081199 MGI:5009783 NCBI chr 8:105,739,927...105,741,982
Ensembl chr 8:105,739,623...105,741,998
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19390
    metabolic process 11736
      nitrogen compound metabolic process 9922
        organonitrogen compound metabolic process 6758
          purine-containing compound metabolic process 448
            purine nucleotide metabolic process 421
              purine deoxyribonucleotide metabolic process 22
                dADP metabolic process + 2
                dAMP metabolic process + 8
                dATP metabolic process + 7
                dGDP metabolic process + 3
                dGMP metabolic process + 9
                dGTP metabolic process + 3
                dITP metabolic process + 1
                purine deoxyribonucleotide biosynthetic process + 3
                purine deoxyribonucleotide catabolic process + 14
                purine deoxyribonucleotide interconversion 0
Path 2
Term Annotations click to browse term
  biological_process 19390
    cellular process 18252
      cellular metabolic process 10656
        cellular nitrogen compound metabolic process 6503
          nucleobase-containing compound metabolic process 5360
            nucleobase-containing small molecule metabolic process 573
              nucleoside phosphate metabolic process 505
                nucleotide metabolic process 497
                  deoxyribonucleotide metabolic process 45
                    2'-deoxyribonucleotide metabolic process 39
                      purine deoxyribonucleotide metabolic process 22
                        dADP metabolic process + 2
                        dAMP metabolic process + 8
                        dATP metabolic process + 7
                        dGDP metabolic process + 3
                        dGMP metabolic process + 9
                        dGTP metabolic process + 3
                        dITP metabolic process + 1
                        purine deoxyribonucleotide biosynthetic process + 3
                        purine deoxyribonucleotide catabolic process + 14
                        purine deoxyribonucleotide interconversion 0
paths to the root