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ONTOLOGY REPORT - ANNOTATIONS


Term:pyrimidine nucleoside triphosphate metabolic process
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Accession:GO:0009147 term browser browse the term
Definition:The chemical reactions and pathways involving pyrimidine nucleoside triphosphate, a compound consisting of a pyrimidine base linked to a ribose or deoxyribose sugar esterified with triphosphate on the sugar.
Synonyms:exact_synonym: pyrimidine nucleoside triphosphate metabolism


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'de novo' CTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctps1 CTP synthase 1 IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 5:139,475,934...139,505,065
Ensembl chr 5:139,475,934...139,505,065
JBrowse link
G Ctps2 CTP synthase 2 IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr  X:33,383,087...33,522,852
Ensembl chr  X:33,383,087...33,522,836
JBrowse link
CTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctps1 CTP synthase 1 ISO
IBA
(PMID:16179339), (PMID:24870241)
PMID:21873635
RGD PMID:16179339, PMID:24870241, PMID:21873635 RGD:13792537 NCBI chr 5:139,475,934...139,505,065
Ensembl chr 5:139,475,934...139,505,065
JBrowse link
G Ctps2 CTP synthase 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:33,383,087...33,522,852
Ensembl chr  X:33,383,087...33,522,836
JBrowse link
G Decr2 2,4-dienoyl-CoA reductase 2 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:15,451,850...15,460,227
Ensembl chr10:15,431,638...15,465,413
JBrowse link
G Nme1 NME/NM23 nucleoside diphosphate kinase 1 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:81,657,152...81,666,542
Ensembl chr10:81,657,153...81,666,523
JBrowse link
G Nme2 NME/NM23 nucleoside diphosphate kinase 2 IDA RGD PMID:1316151 RGD:729254 NCBI chr10:81,648,216...81,653,717
Ensembl chr10:81,648,216...81,653,717
JBrowse link
G Nme3 NME/NM23 nucleoside diphosphate kinase 3 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:14,258,232...14,259,365
Ensembl chr10:14,258,380...14,259,336
JBrowse link
G Nme4 NME/NM23 nucleoside diphosphate kinase 4 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:15,461,567...15,465,422
Ensembl chr10:15,431,638...15,465,413
JBrowse link
G Nme5 NME/NM23 family member 5 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr18:27,357,460...27,374,641
Ensembl chr18:27,357,413...27,374,603
JBrowse link
G Nme6 NME/NM23 nucleoside diphosphate kinase 6 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:117,920,912...117,928,148
Ensembl chr 8:117,920,944...117,928,195
JBrowse link
G Nme7 NME/NM23 family member 7 IEA GO_REF:0000002
GO_REF:0000104
InterPro
UniProt
GO_REF:0000002, GO_REF:0000104 NCBI chr13:82,607,844...82,737,383
Ensembl chr13:82,626,685...82,737,343
JBrowse link
CTP salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Uck1 uridine-cytidine kinase 1 IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 3:11,271,874...11,277,757
Ensembl chr 3:11,271,885...11,277,757
JBrowse link
G Uck2 uridine-cytidine kinase 2 IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr13:85,376,716...85,443,976
Ensembl chr13:85,376,716...85,443,976
JBrowse link
G Uckl1 uridine-cytidine kinase 1-like 1 IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 3:177,066,022...177,078,611
Ensembl chr 3:177,066,014...177,078,594
JBrowse link
dCTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctpp1 dCTP pyrophosphatase 1 ISO
IBA
ISS
(PMID:24467396)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:24467396, PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 1:198,703,459...198,706,852
Ensembl chr 1:198,703,461...198,706,852
JBrowse link
dTTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk2 cytidine/uridine monophosphate kinase 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:45,683,242...45,694,824
Ensembl chr 6:45,683,234...45,694,822
JBrowse link
G Dtymk deoxythymidylate kinase IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:220041, PMID:21873635 RGD:5133687, RGD:13792537 NCBI chr 9:100,921,565...100,930,399
Ensembl chr 9:100,921,565...100,930,399
JBrowse link
G Tbpl1 TATA-box binding protein like 1 ISO MGI:2182539 (MGI:2159505|PMID:11861477) RGD PMID:11861477 MGI:2159505 NCBI chr 1:23,977,154...24,002,512
Ensembl chr 1:23,977,688...24,002,506
JBrowse link
G Tyms thymidylate synthetase IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 9:121,918,875...121,931,564
Ensembl chr 9:121,918,947...121,931,564
JBrowse link
dTTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctpp1 dCTP pyrophosphatase 1 NOT ISO (PMID:24467396) RGD PMID:24467396 NCBI chr 1:198,703,459...198,706,852
Ensembl chr 1:198,703,461...198,706,852
JBrowse link
dUTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07001512.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:48,565,160...48,565,711 JBrowse link
G Dut deoxyuridine triphosphatase IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:3032103, PMID:1315924, PMID:21873635 RGD:2300191, RGD:2301218, RGD:13792537 NCBI chr 3:117,514,399...117,525,450
Ensembl chr 3:117,514,444...117,525,446
JBrowse link
UTP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:10659854, PMID:21873635 RGD:2303528, RGD:13792537 NCBI chr 6:26,657,507...26,680,459
Ensembl chr 6:26,657,780...26,680,284
JBrowse link
G Decr2 2,4-dienoyl-CoA reductase 2 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:15,451,850...15,460,227
Ensembl chr10:15,431,638...15,465,413
JBrowse link
G Nme1 NME/NM23 nucleoside diphosphate kinase 1 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:81,657,152...81,666,542
Ensembl chr10:81,657,153...81,666,523
JBrowse link
G Nme2 NME/NM23 nucleoside diphosphate kinase 2 IDA RGD PMID:1316151 RGD:729254 NCBI chr10:81,648,216...81,653,717
Ensembl chr10:81,648,216...81,653,717
JBrowse link
G Nme3 NME/NM23 nucleoside diphosphate kinase 3 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:14,258,232...14,259,365
Ensembl chr10:14,258,380...14,259,336
JBrowse link
G Nme4 NME/NM23 nucleoside diphosphate kinase 4 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:15,461,567...15,465,422
Ensembl chr10:15,431,638...15,465,413
JBrowse link
G Nme5 NME/NM23 family member 5 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr18:27,357,460...27,374,641
Ensembl chr18:27,357,413...27,374,603
JBrowse link
G Nme6 NME/NM23 nucleoside diphosphate kinase 6 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:117,920,912...117,928,148
Ensembl chr 8:117,920,944...117,928,195
JBrowse link
G Nme7 NME/NM23 family member 7 IEA GO_REF:0000002
GO_REF:0000104
InterPro
UniProt
GO_REF:0000002, GO_REF:0000104 NCBI chr13:82,607,844...82,737,383
Ensembl chr13:82,626,685...82,737,343
JBrowse link
UTP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak3 adenylate kinase 3 ISO
IEA
(PMID:11485571)
GO_REF:0000107
RGD
Ensembl
PMID:11485571 GO_REF:0000107 NCBI chr 1:247,144,486...247,169,690
Ensembl chr 1:247,144,491...247,169,693
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20020
    metabolic process 12263
      organic substance metabolic process 11643
        organophosphate metabolic process 943
          nucleoside phosphate metabolic process 513
            nucleoside triphosphate metabolic process 125
              pyrimidine nucleoside triphosphate metabolic process 22
                pyrimidine deoxyribonucleoside triphosphate metabolic process + 7
                pyrimidine nucleoside triphosphate biosynthetic process + 18
                pyrimidine nucleoside triphosphate catabolic process + 3
                pyrimidine ribonucleoside triphosphate metabolic process + 15
Path 2
Term Annotations click to browse term
  biological_process 20020
    metabolic process 12263
      nitrogen compound metabolic process 10347
        cellular nitrogen compound metabolic process 6684
          nucleobase-containing compound metabolic process 5488
            nucleobase-containing small molecule metabolic process 591
              nucleoside phosphate metabolic process 513
                nucleoside triphosphate metabolic process 125
                  pyrimidine nucleoside triphosphate metabolic process 22
                    pyrimidine deoxyribonucleoside triphosphate metabolic process + 7
                    pyrimidine nucleoside triphosphate biosynthetic process + 18
                    pyrimidine nucleoside triphosphate catabolic process + 3
                    pyrimidine ribonucleoside triphosphate metabolic process + 15
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.