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ONTOLOGY REPORT - ANNOTATIONS


Term:pyrimidine nucleoside diphosphate biosynthetic process
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Accession:GO:0009139 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of pyrimidine nucleoside diphosphate, a compound consisting of a pyrimidine base linked to a ribose or deoxyribose sugar esterified with diphosphate on the sugar.
Synonyms:exact_synonym: pyrimidine nucleoside diphosphate anabolism;   pyrimidine nucleoside diphosphate biosynthesis;   pyrimidine nucleoside diphosphate formation;   pyrimidine nucleoside diphosphate synthesis



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CDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine/uridine monophosphate kinase 1 involved_in IDA
IEA
IBA
GO_REF:0000118
GO_REF:0000033
TreeGrafter
GO_Central
RGD
PMID:3010881 GO_REF:0000033 GO_REF:0000118, RGD:5133253 NCBI chr 5:128,480,301...128,507,830
Ensembl chr 5:128,480,301...128,507,830
JBrowse link
dCDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine/uridine monophosphate kinase 1 IDA RGD PMID:192455 RGD:5133256 NCBI chr 5:128,480,301...128,507,830
Ensembl chr 5:128,480,301...128,507,830
JBrowse link
dTDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk2 cytidine/uridine monophosphate kinase 2 involved_in IDA
IBA
GO_REF:0000033 GO_Central
RGD
PMID:192455 GO_REF:0000033, RGD:5133256 NCBI chr 6:43,073,706...43,085,183
Ensembl chr 6:43,073,796...43,085,183
JBrowse link
G Dtymk deoxythymidylate kinase acts_upstream_of_or_within
involved_in
IDA
ISO
IBA
(MGI:77260|PMID:8845311)
(PMID:12614151)
GO_REF:0000033
RGD
GO_Central
PMID:8845311 PMID:12614151 PMID:220041 GO_REF:0000033 MGI:77260, RGD:5133687 NCBI chr 9:94,315,552...94,324,386
Ensembl chr 9:94,315,552...94,324,870
JBrowse link
dUDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine/uridine monophosphate kinase 1 IDA RGD PMID:3010881 RGD:5133253 NCBI chr 5:128,480,301...128,507,830
Ensembl chr 5:128,480,301...128,507,830
JBrowse link
G Cmpk2 cytidine/uridine monophosphate kinase 2 involved_in IDA
IBA
GO_REF:0000033 GO_Central
RGD
PMID:192455 GO_REF:0000033, RGD:5133256 NCBI chr 6:43,073,706...43,085,183
Ensembl chr 6:43,073,796...43,085,183
JBrowse link
G Dtymk deoxythymidylate kinase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:94,315,552...94,324,386
Ensembl chr 9:94,315,552...94,324,870
JBrowse link
UDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in ISO (PMID:25678555) RGD PMID:25678555 NCBI chr 6:25,292,133...25,315,078
Ensembl chr 6:25,292,133...25,319,861
JBrowse link
G Cmpk1 cytidine/uridine monophosphate kinase 1 involved_in IDA
IBA
IEA
ISO
GO_REF:0000033
GO_REF:0000118
GO_REF:0000107
(PMID:11912132)
GO_Central
TreeGrafter
Ensembl
RGD
PMID:11912132 PMID:3010881 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118, RGD:5133253 NCBI chr 5:128,480,301...128,507,830
Ensembl chr 5:128,480,301...128,507,830
JBrowse link
G Dhodh dihydroorotate dehydrogenase (quinone) involved_in ISO
IEA
(MGI:6282496|PMID:30449682), (MGI:6720231|PMID:6249586)
GO_REF:0000107
RGD
Ensembl
PMID:6249586 PMID:30449682 GO_REF:0000107 MGI:6282496 MGI:6720231 NCBI chr19:37,551,858...37,573,327
Ensembl chr19:37,558,177...37,591,654
JBrowse link
G Umps uridine monophosphate synthetase involved_in ISO (MGI:1289111|PMID:2419341), (MGI:6720230|PMID:6154574) RGD PMID:2419341 PMID:6154574 MGI:1289111 MGI:6720230 NCBI chr11:66,806,107...66,816,520
Ensembl chr11:66,806,045...66,821,903
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20335
    metabolic process 11743
      organic substance metabolic process 11237
        organophosphate metabolic process 1066
          nucleoside phosphate metabolic process 636
            nucleoside diphosphate metabolic process 184
              nucleoside diphosphate biosynthetic process 13
                pyrimidine nucleoside diphosphate biosynthetic process 6
                  pyrimidine deoxyribonucleoside diphosphate biosynthetic process + 3
                  pyrimidine ribonucleoside diphosphate biosynthetic process + 4
Path 2
Term Annotations click to browse term
  biological_process 20335
    metabolic process 11743
      cellular metabolic process 10298
        cellular aromatic compound metabolic process 5965
          nucleobase-containing compound metabolic process 5722
            nucleobase-containing small molecule metabolic process 711
              nucleoside phosphate metabolic process 636
                nucleoside diphosphate metabolic process 184
                  nucleoside diphosphate biosynthetic process 13
                    pyrimidine nucleoside diphosphate biosynthetic process 6
                      pyrimidine deoxyribonucleoside diphosphate biosynthetic process + 3
                      pyrimidine ribonucleoside diphosphate biosynthetic process + 4
paths to the root