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ONTOLOGY REPORT - ANNOTATIONS


Term:pyrimidine nucleoside diphosphate metabolic process
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Accession:GO:0009138 term browser browse the term
Definition:The chemical reactions and pathways involving pyrimidine nucleoside diphosphate, a compound consisting of a pyrimidine base linked to a ribose or deoxyribose sugar esterified with diphosphate on the sugar.
Synonyms:exact_synonym: pyrimidine nucleoside diphosphate metabolism


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CDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine/uridine monophosphate kinase 1 ISO RGD PMID:3010881 RGD:5133253 NCBI chrNW_004936474:28,147,459...28,180,779 JBrowse link
dCDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine/uridine monophosphate kinase 1 ISO RGD PMID:192455 RGD:5133256 NCBI chrNW_004936474:28,147,459...28,180,779 JBrowse link
dTDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk2 cytidine/uridine monophosphate kinase 2 ISO RGD PMID:192455 RGD:5133256 NCBI chrNW_004936532:3,896,654...3,908,184 JBrowse link
G Dtymk deoxythymidylate kinase involved_in
acts_upstream_of_or_within
ISO (PMID:12614151)
(MGI:77260|PMID:8845311)
RGD
UniProt
MGI
PMID:220041 PMID:8845311 PMID:12614151 MGI:77260 RGD:5133687 NCBI chrNW_004936745:282,199...289,273 JBrowse link
dUDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine/uridine monophosphate kinase 1 ISO RGD PMID:3010881 RGD:5133253 NCBI chrNW_004936474:28,147,459...28,180,779 JBrowse link
G Cmpk2 cytidine/uridine monophosphate kinase 2 ISO RGD PMID:192455 RGD:5133256 NCBI chrNW_004936532:3,896,654...3,908,184 JBrowse link
UDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936493:5,308,268...5,332,934 JBrowse link
G Cmpk1 cytidine/uridine monophosphate kinase 1 involved_in ISO
IEA
RGD
Ensembl
PMID:3010881 GO_REF:0000107 RGD:5133253 NCBI chrNW_004936474:28,147,459...28,180,779 JBrowse link
G Dhodh dihydroorotate dehydrogenase (quinone) involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:21,863,627...21,877,660 JBrowse link
G Umps uridine monophosphate synthetase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936725:553,278...564,846 JBrowse link
UDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936555:6,896,661...6,920,333 JBrowse link
G Entpd5 ectonucleoside triphosphate diphosphohydrolase 5 (inactive) involved_in ISO (MGI:1927266|PMID:10369669), (MGI:4881347|PMID:21074248) UniProt PMID:10369669 PMID:21074248 MGI:1927266 MGI:4881347 NCBI chrNW_004936488:3,241,004...3,280,360 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15039
    metabolic process 9484
      organic substance metabolic process 9129
        organophosphate metabolic process 850
          nucleoside phosphate metabolic process 480
            nucleoside diphosphate metabolic process 119
              pyrimidine nucleoside diphosphate metabolic process 8
                pyrimidine deoxyribonucleoside diphosphate metabolic process + 3
                pyrimidine nucleoside diphosphate biosynthetic process + 6
                pyrimidine nucleoside diphosphate catabolic process + 2
                pyrimidine ribonucleoside diphosphate metabolic process + 6
Path 2
Term Annotations click to browse term
  biological_process 15039
    metabolic process 9484
      nitrogen compound metabolic process 8118
        cellular nitrogen compound metabolic process 5028
          nucleobase-containing compound metabolic process 4502
            nucleobase-containing small molecule metabolic process 535
              nucleoside phosphate metabolic process 480
                nucleoside diphosphate metabolic process 119
                  pyrimidine nucleoside diphosphate metabolic process 8
                    pyrimidine deoxyribonucleoside diphosphate metabolic process + 3
                    pyrimidine nucleoside diphosphate biosynthetic process + 6
                    pyrimidine nucleoside diphosphate catabolic process + 2
                    pyrimidine ribonucleoside diphosphate metabolic process + 6
paths to the root