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ONTOLOGY REPORT - ANNOTATIONS

Term:pyrimidine nucleoside diphosphate metabolic process
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Accession:GO:0009138 term browser browse the term
Definition:The chemical reactions and pathways involving pyrimidine nucleoside diphosphate, a compound consisting of a pyrimidine base linked to a ribose or deoxyribose sugar esterified with diphosphate on the sugar.
Synonyms:exact_synonym: pyrimidine nucleoside diphosphate metabolism


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CDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine/uridine monophosphate kinase 1 involved_in ISO
IBA		 RGD
MGI
GO_Central		 PMID:3010881 GO_REF:0000033 GO_REF:0000096 MGI:4417868 RGD:5133253 NCBI chr 4:114,817,810...114,844,425
Ensembl chr 4:114,816,533...114,844,438 		JBrowse link
dCDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine/uridine monophosphate kinase 1 involved_in ISO RGD
MGI		 PMID:192455 GO_REF:0000096 MGI:4417868 RGD:5133256 NCBI chr 4:114,817,810...114,844,425
Ensembl chr 4:114,816,533...114,844,438 		JBrowse link
dTDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk2 cytidine/uridine monophosphate kinase 2 involved_in ISO
IBA		 RGD
MGI
GO_Central		 PMID:192455 GO_REF:0000033 GO_REF:0000096 MGI:4417868 RGD:5133256 NCBI chr12:26,519,121...26,529,836
Ensembl chr12:26,519,203...26,529,836 		JBrowse link
G Dtymk deoxythymidylate kinase involved_in
acts_upstream_of_or_within		 ISO
IBA
IDA		 (PMID:8845311) RGD
GO_Central
MGI		 PMID:220041 PMID:8845311 GO_REF:0000033 GO_REF:0000096 GO_REF:0000119 MGI:4417868 MGI:4834177 RGD:5133687 NCBI chr 1:93,720,298...93,730,246
Ensembl chr 1:93,720,298...93,729,656 		JBrowse link
dUDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine/uridine monophosphate kinase 1 involved_in ISO RGD
MGI		 PMID:3010881 GO_REF:0000096 MGI:4417868 RGD:5133253 NCBI chr 4:114,817,810...114,844,425
Ensembl chr 4:114,816,533...114,844,438 		JBrowse link
G Cmpk2 cytidine/uridine monophosphate kinase 2 involved_in ISO
IBA		 RGD
GO_Central
MGI		 PMID:192455 GO_REF:0000033 GO_REF:0000096 MGI:4417868 RGD:5133256 NCBI chr12:26,519,121...26,529,836
Ensembl chr12:26,519,203...26,529,836 		JBrowse link
G Dtymk deoxythymidylate kinase involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:93,720,298...93,730,246
Ensembl chr 1:93,720,298...93,729,656 		JBrowse link
UDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in ISO (PMID:25678555) MGI PMID:25678555 NCBI chr 5:31,211,964...31,235,823
Ensembl chr 5:31,212,124...31,235,823 		JBrowse link
G Cmpk1 cytidine/uridine monophosphate kinase 1 involved_in ISO
IBA		 (PMID:11912132) RGD
MGI
GO_Central		 PMID:3010881 PMID:11912132 GO_REF:0000033 GO_REF:0000096 MGI:4417868 RGD:5133253 NCBI chr 4:114,817,810...114,844,425
Ensembl chr 4:114,816,533...114,844,438 		JBrowse link
G Dhodh dihydroorotate dehydrogenase involved_in IMP (PMID:30449682), (PMID:6249586) MGI PMID:6249586 PMID:30449682 NCBI chr 8:110,319,876...110,335,330
Ensembl chr 8:110,317,975...110,335,305 		JBrowse link
G Umps uridine monophosphate synthetase involved_in IDA
IMP		 (PMID:2419341)
(PMID:6154574)		 MGI PMID:2419341 PMID:6154574 NCBI chr16:33,775,152...33,787,408
Ensembl chr16:33,775,152...33,787,408 		JBrowse link
UDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 involved_in ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr14:69,574,600...69,604,191
Ensembl chr14:69,574,623...69,604,719 		JBrowse link
G Entpd4b ectonucleoside triphosphate diphosphohydrolase 4B involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr14:69,792,850...69,822,389
Ensembl chr14:69,792,873...69,822,969 		JBrowse link
G Entpd5 ectonucleoside triphosphate diphosphohydrolase 5 involved_in IDA (MGI:1927266|PMID:10369669), (MGI:4881347|PMID:21074248) UniProt PMID:10369669 PMID:21074248 MGI:1927266 MGI:4881347 NCBI chr12:84,420,649...84,455,803
Ensembl chr12:84,420,631...84,455,803 		JBrowse link
G Entpd7 ectonucleoside triphosphate diphosphohydrolase 7 involved_in IBA GO_Central GO_REF:0000033 NCBI chr19:43,678,128...43,722,292
Ensembl chr19:43,678,111...43,722,136 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28573
    metabolic process 11001
      small molecule metabolic process 1876
        nucleobase-containing small molecule metabolic process 667
          nucleoside phosphate metabolic process 608
            nucleoside diphosphate metabolic process 140
              pyrimidine nucleoside diphosphate metabolic process 10
                pyrimidine deoxyribonucleoside diphosphate metabolic process + 3
                pyrimidine nucleoside diphosphate biosynthetic process + 6
                pyrimidine nucleoside diphosphate catabolic process + 4
                pyrimidine ribonucleoside diphosphate metabolic process + 8
Path 2
Term Annotations click to browse term
  biological_process 28573
    metabolic process 11001
      organic substance metabolic process 10573
        organic cyclic compound metabolic process 5906
          nucleobase-containing compound metabolic process 5390
            nucleobase-containing small molecule metabolic process 667
              nucleoside phosphate metabolic process 608
                nucleoside diphosphate metabolic process 140
                  pyrimidine nucleoside diphosphate metabolic process 10
                    pyrimidine deoxyribonucleoside diphosphate metabolic process + 3
                    pyrimidine nucleoside diphosphate biosynthetic process + 6
                    pyrimidine nucleoside diphosphate catabolic process + 4
                    pyrimidine ribonucleoside diphosphate metabolic process + 8
paths to the root