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ONTOLOGY REPORT - ANNOTATIONS


Term:pyrimidine nucleoside diphosphate metabolic process
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Accession:GO:0009138 term browser browse the term
Definition:The chemical reactions and pathways involving pyrimidine nucleoside diphosphate, a compound consisting of a pyrimidine base linked to a ribose or deoxyribose sugar esterified with diphosphate on the sugar.
Synonyms:exact_synonym: pyrimidine nucleoside diphosphate metabolism



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CDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine monophosphate (UMP-CMP) kinase 1 involved_in IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
RGD
MGI
PMID:3010881 PMID:21873635 GO_REF:0000096 MGI:4417868 MGI:6201960 RGD:5133253 NCBI chr 4:114,817,810...114,844,425
Ensembl chr 4:114,816,533...114,844,438
JBrowse link
dCDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine monophosphate (UMP-CMP) kinase 1 involved_in ISO RGD
MGI
PMID:192455 GO_REF:0000096 MGI:4417868 RGD:5133256 NCBI chr 4:114,817,810...114,844,425
Ensembl chr 4:114,816,533...114,844,438
JBrowse link
dTDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk2 cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial involved_in IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
RGD
PMID:192455 PMID:21873635 GO_REF:0000096 MGI:4417868 MGI:6201960 RGD:5133256 NCBI chr12:26,519,121...26,529,836
Ensembl chr12:26,519,203...26,529,836
JBrowse link
G Dtymk deoxythymidylate kinase acts_upstream_of_or_within
involved_in
IDA
ISO
IBA
(MGI:77260|PMID:8845311)
(MGI:6201960|PMID:21873635)
MGI
RGD
GO_Central
PMID:220041 PMID:8845311 PMID:21873635 GO_REF:0000096 MGI:4417868 MGI:4834177 MGI:6201960 MGI:77260 RGD:5133687 NCBI chr 1:93,720,298...93,730,246
Ensembl chr 1:93,720,298...93,729,656
JBrowse link
dUDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine monophosphate (UMP-CMP) kinase 1 involved_in ISO RGD
MGI
PMID:3010881 GO_REF:0000096 MGI:4417868 RGD:5133253 NCBI chr 4:114,817,810...114,844,425
Ensembl chr 4:114,816,533...114,844,438
JBrowse link
G Cmpk2 cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial involved_in IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
RGD
PMID:192455 PMID:21873635 GO_REF:0000096 MGI:4417868 MGI:6201960 RGD:5133256 NCBI chr12:26,519,121...26,529,836
Ensembl chr12:26,519,203...26,529,836
JBrowse link
G Dtymk deoxythymidylate kinase involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 1:93,720,298...93,730,246
Ensembl chr 1:93,720,298...93,729,656
JBrowse link
UDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in ISO (MGI:6719483|PMID:25678555) MGI PMID:25678555 MGI:6719483 NCBI chr 5:31,211,964...31,235,823
Ensembl chr 5:31,212,124...31,235,823
JBrowse link
G Cmpk1 cytidine monophosphate (UMP-CMP) kinase 1 involved_in IBA
ISO
(MGI:6201960|PMID:21873635)
(MGI:6726469|PMID:11912132)
GO_Central
MGI
RGD
PMID:3010881 PMID:11912132 PMID:21873635 GO_REF:0000096 MGI:4417868 MGI:6201960 MGI:6726469 RGD:5133253 NCBI chr 4:114,817,810...114,844,425
Ensembl chr 4:114,816,533...114,844,438
JBrowse link
G Dhodh dihydroorotate dehydrogenase involved_in IMP (MGI:6282496|PMID:30449682), (MGI:6720231|PMID:6249586) MGI PMID:6249586 PMID:30449682 MGI:6282496 MGI:6720231 NCBI chr 8:110,319,876...110,335,330
Ensembl chr 8:110,317,975...110,335,305
JBrowse link
G Umps uridine monophosphate synthetase involved_in IDA
IMP
(MGI:1289111|PMID:2419341)
(MGI:6720230|PMID:6154574)
MGI PMID:2419341 PMID:6154574 MGI:1289111 MGI:6720230 NCBI chr16:33,775,152...33,787,408
Ensembl chr16:33,775,152...33,787,408
JBrowse link
UDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 involved_in IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr14:69,574,600...69,604,191
Ensembl chr14:69,574,623...69,604,719
JBrowse link
G Entpd4b ectonucleoside triphosphate diphosphohydrolase 4B involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr14:69,792,850...69,822,389
Ensembl chr14:69,792,873...69,822,969
JBrowse link
G Entpd5 ectonucleoside triphosphate diphosphohydrolase 5 involved_in IDA (MGI:1927266|PMID:10369669), (MGI:4881347|PMID:21074248) UniProt PMID:10369669 PMID:21074248 MGI:1927266 MGI:4881347 NCBI chr12:84,420,649...84,455,803
Ensembl chr12:84,420,631...84,455,803
JBrowse link
G Entpd7 ectonucleoside triphosphate diphosphohydrolase 7 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr19:43,678,128...43,722,292
Ensembl chr19:43,678,111...43,722,136
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28742
    metabolic process 11564
      organic substance metabolic process 11166
        organophosphate metabolic process 1005
          nucleoside phosphate metabolic process 587
            nucleoside diphosphate metabolic process 141
              pyrimidine nucleoside diphosphate metabolic process 10
                pyrimidine deoxyribonucleoside diphosphate metabolic process + 3
                pyrimidine nucleoside diphosphate biosynthetic process + 6
                pyrimidine nucleoside diphosphate catabolic process + 4
                pyrimidine ribonucleoside diphosphate metabolic process + 8
Path 2
Term Annotations click to browse term
  biological_process 28742
    metabolic process 11564
      nitrogen compound metabolic process 9738
        cellular nitrogen compound metabolic process 6215
          nucleobase-containing compound metabolic process 5531
            nucleobase-containing small molecule metabolic process 645
              nucleoside phosphate metabolic process 587
                nucleoside diphosphate metabolic process 141
                  pyrimidine nucleoside diphosphate metabolic process 10
                    pyrimidine deoxyribonucleoside diphosphate metabolic process + 3
                    pyrimidine nucleoside diphosphate biosynthetic process + 6
                    pyrimidine nucleoside diphosphate catabolic process + 4
                    pyrimidine ribonucleoside diphosphate metabolic process + 8
paths to the root