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ONTOLOGY REPORT - ANNOTATIONS


Term:pyrimidine nucleoside diphosphate metabolic process
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Accession:GO:0009138 term browser browse the term
Definition:The chemical reactions and pathways involving pyrimidine nucleoside diphosphate, a compound consisting of a pyrimidine base linked to a ribose or deoxyribose sugar esterified with diphosphate on the sugar.
Synonyms:exact_synonym: pyrimidine nucleoside diphosphate metabolism



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CDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CMPK1 cytidine/uridine monophosphate kinase 1 involved_in IBA
ISO
(PMID:21873635) GO_Central
RGD
GO_Central
PMID:3010881 PMID:21873635 RGD:5133253 NCBI chr 1:47,333,790...47,378,839
Ensembl chr 1:47,333,790...47,394,866
JBrowse link
dCDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CMPK1 cytidine/uridine monophosphate kinase 1 ISO RGD PMID:192455 RGD:5133256 NCBI chr 1:47,333,790...47,378,839
Ensembl chr 1:47,333,790...47,394,866
JBrowse link
dTDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CMPK2 cytidine/uridine monophosphate kinase 2 involved_in IBA
IEA
ISO
(PMID:21873635) GO_Central
GO_Central
Ensembl
RGD
PMID:192455 PMID:21873635 GO_REF:0000107 RGD:5133256 NCBI chr 2:6,840,553...6,866,635
Ensembl chr 2:6,840,570...6,866,635
JBrowse link
G DTYMK deoxythymidylate kinase involved_in
acts_upstream_of_or_within
IEA
IBA
IDA
ISO
(PMID:21873635)
(PMID:12614151)
(MGI:77260|PMID:8845311)
InterPro
GO_Central
UniProt
InterPro
Ensembl
MGI
RGD
GO_Central
PMID:220041 PMID:8845311 PMID:12614151 PMID:21873635 GO_REF:0000002 GO_REF:0000107 MGI:77260 RGD:5133687 NCBI chr 2:241,675,747...241,686,815
Ensembl chr 2:241,675,747...241,686,944
JBrowse link
dUDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CMPK1 cytidine/uridine monophosphate kinase 1 ISO RGD PMID:3010881 RGD:5133253 NCBI chr 1:47,333,790...47,378,839
Ensembl chr 1:47,333,790...47,394,866
JBrowse link
G CMPK2 cytidine/uridine monophosphate kinase 2 involved_in IBA
IEA
ISO
(PMID:21873635) GO_Central
GO_Central
Ensembl
RGD
PMID:192455 PMID:21873635 GO_REF:0000107 RGD:5133256 NCBI chr 2:6,840,553...6,866,635
Ensembl chr 2:6,840,570...6,866,635
JBrowse link
G DTYMK deoxythymidylate kinase involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 2:241,675,747...241,686,815
Ensembl chr 2:241,675,747...241,686,944
JBrowse link
UDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CAD carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in IDA (PMID:25678555) MGI
MGI
PMID:25678555 NCBI chr 2:27,217,369...27,243,943
Ensembl chr 2:27,217,369...27,243,943
JBrowse link
G CMPK1 cytidine/uridine monophosphate kinase 1 involved_in IBA
IDA
ISO
(PMID:21873635)
(PMID:11912132)
GO_Central
GO_Central
MGI
MGI
RGD
PMID:3010881 PMID:11912132 PMID:21873635 RGD:5133253 NCBI chr 1:47,333,790...47,378,839
Ensembl chr 1:47,333,790...47,394,866
JBrowse link
G DHODH dihydroorotate dehydrogenase (quinone) involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr16:72,008,744...72,027,659
Ensembl chr16:72,008,588...72,027,664
JBrowse link
G UMPS uridine monophosphate synthetase involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 3:124,730,452...124,749,273
Ensembl chr 3:124,730,433...124,749,273
JBrowse link
UDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENTPD4 ectonucleoside triphosphate diphosphohydrolase 4 involved_in IDA
IBA
(PMID:10858452), (PMID:9556635)
(PMID:21873635)
UniProt
GO_Central
GO_Central
UniProt
PMID:9556635 PMID:10858452 PMID:21873635 NCBI chr 8:23,429,162...23,457,647
Ensembl chr 8:23,385,783...23,457,695
JBrowse link
G ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 (inactive) involved_in ISS UniProt GO_REF:0000024 NCBI chr14:73,955,329...74,019,288
Ensembl chr14:73,958,010...74,019,399
JBrowse link
G ENTPD7 ectonucleoside triphosphate diphosphohydrolase 7 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr10:99,659,509...99,711,241
Ensembl chr10:99,659,509...99,711,241
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19753
    metabolic process 13172
      organic substance metabolic process 12698
        organophosphate metabolic process 1138
          nucleoside phosphate metabolic process 671
            nucleoside diphosphate metabolic process 151
              pyrimidine nucleoside diphosphate metabolic process 9
                pyrimidine deoxyribonucleoside diphosphate metabolic process + 3
                pyrimidine nucleoside diphosphate biosynthetic process + 6
                pyrimidine nucleoside diphosphate catabolic process + 3
                pyrimidine ribonucleoside diphosphate metabolic process + 7
Path 2
Term Annotations click to browse term
  biological_process 19753
    metabolic process 13172
      nitrogen compound metabolic process 11084
        cellular nitrogen compound metabolic process 7370
          nucleobase-containing compound metabolic process 6664
            nucleobase-containing small molecule metabolic process 748
              nucleoside phosphate metabolic process 671
                nucleoside diphosphate metabolic process 151
                  pyrimidine nucleoside diphosphate metabolic process 9
                    pyrimidine deoxyribonucleoside diphosphate metabolic process + 3
                    pyrimidine nucleoside diphosphate biosynthetic process + 6
                    pyrimidine nucleoside diphosphate catabolic process + 3
                    pyrimidine ribonucleoside diphosphate metabolic process + 7
paths to the root