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ONTOLOGY REPORT - ANNOTATIONS


Term:pyrimidine nucleoside diphosphate metabolic process
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Accession:GO:0009138 term browser browse the term
Definition:The chemical reactions and pathways involving pyrimidine nucleoside diphosphate, a compound consisting of a pyrimidine base linked to a ribose or deoxyribose sugar esterified with diphosphate on the sugar.
Synonyms:exact_synonym: pyrimidine nucleoside diphosphate metabolism


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CDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine/uridine monophosphate kinase 1 ISO RGD PMID:3010881 RGD:5133253 NCBI chrNW_004955464:11,179,432...11,213,147 JBrowse link
dCDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine/uridine monophosphate kinase 1 ISO RGD PMID:192455 RGD:5133256 NCBI chrNW_004955464:11,179,432...11,213,147 JBrowse link
dTDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk2 cytidine/uridine monophosphate kinase 2 ISO RGD PMID:192455 RGD:5133256 NCBI chrNW_004955487:2,010,126...2,024,804
Ensembl chrNW_004955487:2,010,228...2,029,175
JBrowse link
G Dtymk deoxythymidylate kinase involved_in
acts_upstream_of_or_within
ISO (PMID:12614151)
(MGI:77260|PMID:8845311)
RGD
UniProt
MGI
PMID:220041 PMID:8845311 PMID:12614151 MGI:77260 RGD:5133687 NCBI chrNW_004955542:155,741...163,759
Ensembl chrNW_004955542:155,742...163,759
JBrowse link
dUDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine/uridine monophosphate kinase 1 ISO RGD PMID:3010881 RGD:5133253 NCBI chrNW_004955464:11,179,432...11,213,147 JBrowse link
G Cmpk2 cytidine/uridine monophosphate kinase 2 ISO RGD PMID:192455 RGD:5133256 NCBI chrNW_004955487:2,010,126...2,024,804
Ensembl chrNW_004955487:2,010,228...2,029,175
JBrowse link
UDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in ISO (PMID:25678555) MGI PMID:25678555 NCBI chrNW_004955469:9,203,433...9,227,526
Ensembl chrNW_004955469:9,203,434...9,227,865
JBrowse link
G Cmpk1 cytidine/uridine monophosphate kinase 1 involved_in ISO (PMID:11912132) RGD
MGI
PMID:3010881 PMID:11912132 RGD:5133253 NCBI chrNW_004955464:11,179,432...11,213,147 JBrowse link
G Dhodh dihydroorotate dehydrogenase (quinone) involved_in ISO (MGI:6282496|PMID:30449682), (MGI:6720231|PMID:6249586) MGI PMID:6249586 PMID:30449682 MGI:6282496 MGI:6720231 NCBI chrNW_004955484:4,699,743...4,713,466
Ensembl chrNW_004955484:4,699,722...4,713,466
JBrowse link
G Umps uridine monophosphate synthetase involved_in ISO (MGI:6720230|PMID:6154574)
(MGI:1289111|PMID:2419341)
MGI PMID:2419341 PMID:6154574 MGI:1289111 MGI:6720230 NCBI chrNW_004955427:23,825,529...23,841,427
Ensembl chrNW_004955427:23,825,523...23,841,152
JBrowse link
UDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 involved_in ISO (PMID:10858452), (PMID:9556635) UniProt PMID:9556635 PMID:10858452 NCBI chrNW_004955403:46,609,211...46,637,622
Ensembl chrNW_004955403:46,609,211...46,637,643
JBrowse link
G Entpd5 ectonucleoside triphosphate diphosphohydrolase 5 (inactive) involved_in ISO (MGI:1927266|PMID:10369669), (MGI:4881347|PMID:21074248) UniProt PMID:10369669 PMID:21074248 MGI:1927266 MGI:4881347 NCBI chrNW_004955523:1,407,812...1,441,829
Ensembl chrNW_004955523:1,421,749...1,441,829
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12272
    metabolic process 7818
      organic substance metabolic process 7528
        organophosphate metabolic process 723
          nucleoside phosphate metabolic process 401
            nucleoside diphosphate metabolic process 105
              pyrimidine nucleoside diphosphate metabolic process 8
                pyrimidine deoxyribonucleoside diphosphate metabolic process + 3
                pyrimidine nucleoside diphosphate biosynthetic process + 6
                pyrimidine nucleoside diphosphate catabolic process + 2
                pyrimidine ribonucleoside diphosphate metabolic process + 6
Path 2
Term Annotations click to browse term
  biological_process 12272
    metabolic process 7818
      nitrogen compound metabolic process 6633
        cellular nitrogen compound metabolic process 4216
          nucleobase-containing compound metabolic process 3832
            nucleobase-containing small molecule metabolic process 441
              nucleoside phosphate metabolic process 401
                nucleoside diphosphate metabolic process 105
                  pyrimidine nucleoside diphosphate metabolic process 8
                    pyrimidine deoxyribonucleoside diphosphate metabolic process + 3
                    pyrimidine nucleoside diphosphate biosynthetic process + 6
                    pyrimidine nucleoside diphosphate catabolic process + 2
                    pyrimidine ribonucleoside diphosphate metabolic process + 6
paths to the root