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ONTOLOGY REPORT - ANNOTATIONS


Term:nucleoside diphosphate catabolic process
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Accession:GO:0009134 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of a nucleoside diphosphate, a compound consisting of a nucleobase linked to a deoxyribose or ribose sugar esterified with diphosphate on the sugar.
Synonyms:exact_synonym: nucleoside diphosphate breakdown;   nucleoside diphosphate catabolism;   nucleoside diphosphate degradation


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nucleoside diphosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd1 ectonucleoside triphosphate diphosphohydrolase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:239,425,515...239,552,323
Ensembl chr 1:239,425,430...239,552,317
JBrowse link
G Entpd2 ectonucleoside triphosphate diphosphohydrolase 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:8,213,575...8,219,094
Ensembl chr 3:8,213,663...8,226,866
JBrowse link
G Entpd3 ectonucleoside triphosphate diphosphohydrolase 3 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:3043501|PMID:15130768)
RGD PMID:15130768 PMID:21873635 MGI:3043501, RGD:13792537 NCBI chr 8:120,246,412...120,277,943
Ensembl chr 8:120,247,121...120,277,943
JBrowse link
G Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:44,630,873...44,658,706
Ensembl chr15:44,630,873...44,658,706
JBrowse link
G Entpd5 ectonucleoside triphosphate diphosphohydrolase 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:104,019,095...104,055,311
Ensembl chr 6:104,019,185...104,055,530
JBrowse link
G Entpd6 ectonucleoside triphosphate diphosphohydrolase 6 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:139,575,659...139,598,163
Ensembl chr 3:139,575,686...139,598,154
JBrowse link
G Entpd7 ectonucleoside triphosphate diphosphohydrolase 7 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:242,559,365...242,601,044
Ensembl chr 1:242,559,365...242,601,447
JBrowse link
G Entpd8 ectonucleoside triphosphate diphosphohydrolase 8 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:7,885,277...7,895,517
Ensembl chr 3:7,889,909...7,895,296
JBrowse link
ADP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ampd3 adenosine monophosphate deaminase 3 involved_in ISO (MGI:5917829|PMID:28746349) RGD PMID:28746349 MGI:5917829 NCBI chr 1:164,884,823...164,929,899
Ensembl chr 1:164,885,320...164,929,887
JBrowse link
G Entpd1 ectonucleoside triphosphate diphosphohydrolase 1 involved_in ISO MGI:2182811 (MGI:3760051|PMID:17502665) RGD PMID:17502665 MGI:3760051 NCBI chr 1:239,425,515...239,552,323
Ensembl chr 1:239,425,430...239,552,317
JBrowse link
G Nt5e 5' nucleotidase, ecto involved_in IEA
ISO
GO_REF:0000107
MGI:3522017 (MGI:5917829|PMID:28746349), (MGI:6478084|PMID:20430891)
Ensembl
RGD
PMID:20430891 PMID:28746349 GO_REF:0000107 MGI:5917829 MGI:6478084 NCBI chr 8:89,271,046...89,314,918
Ensembl chr 8:89,270,696...89,314,881
JBrowse link
G Nudt9 nudix hydrolase 9 acts_upstream_of_or_within ISO (MGI:2158549|PMID:11825615) RGD PMID:11825615 MGI:2158549 NCBI chr14:5,675,376...5,693,332
Ensembl chr14:5,675,382...5,693,142
JBrowse link
dADP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt18 nudix hydrolase 18 involved_in ISO
ISS
(PMID:22556419)
GO_REF:0000024
RGD
UniProt
PMID:22556419 GO_REF:0000024 NCBI chr15:45,650,597...45,653,985
Ensembl chr15:45,650,664...45,653,963
JBrowse link
dGDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt18 nudix hydrolase 18 involved_in ISO
ISS
(PMID:22556419)
GO_REF:0000024
RGD
UniProt
PMID:22556419 GO_REF:0000024 NCBI chr15:45,650,597...45,653,985
Ensembl chr15:45,650,664...45,653,963
JBrowse link
GDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 involved_in ISO (PMID:10858452) RGD PMID:10858452 NCBI chr15:44,630,873...44,658,706
Ensembl chr15:44,630,873...44,658,706
JBrowse link
G Nudt18 nudix hydrolase 18 involved_in ISO
ISS
(PMID:22556419)
GO_REF:0000024
RGD
UniProt
PMID:22556419 GO_REF:0000024 NCBI chr15:45,650,597...45,653,985
Ensembl chr15:45,650,664...45,653,963
JBrowse link
IDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt16 nudix hydrolase 16 involved_in ISO (PMID:20385596) RGD PMID:20385596 NCBI chr 8:105,739,927...105,741,982
Ensembl chr 8:105,739,623...105,741,998
JBrowse link
G Nudt9 nudix hydrolase 9 acts_upstream_of_or_within ISO (MGI:2158549|PMID:11825615) RGD PMID:11825615 MGI:2158549 NCBI chr14:5,675,376...5,693,332
Ensembl chr14:5,675,382...5,693,142
JBrowse link
purine ribonucleoside diphosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd1 ectonucleoside triphosphate diphosphohydrolase 1 acts_upstream_of_or_within ISO (MGI:2178511|PMID:11929769) RGD PMID:11929769 MGI:2178511 NCBI chr 1:239,425,515...239,552,323
Ensembl chr 1:239,425,430...239,552,317
JBrowse link
G Entpd2 ectonucleoside triphosphate diphosphohydrolase 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:2178511|PMID:11929769)
Ensembl
RGD
PMID:11929769 GO_REF:0000107 MGI:2178511 NCBI chr 3:8,213,575...8,219,094
Ensembl chr 3:8,213,663...8,226,866
JBrowse link
ribonucleoside diphosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt5 nudix hydrolase 5 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:18462755), (PMID:19699693), (PMID:21389046)
UniProt
Ensembl
RGD
PMID:18462755 PMID:19699693 PMID:21389046 GO_REF:0000024 GO_REF:0000107 NCBI chr17:72,435,690...72,459,008
Ensembl chr17:72,435,697...72,459,001
JBrowse link
UDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 involved_in IBA
ISO
PMID:21873635
(PMID:10858452), (PMID:9556635)
RGD PMID:9556635 PMID:10858452 PMID:21873635 RGD:13792537 NCBI chr15:44,630,873...44,658,706
Ensembl chr15:44,630,873...44,658,706
JBrowse link
G Entpd7 ectonucleoside triphosphate diphosphohydrolase 7 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:242,559,365...242,601,044
Ensembl chr 1:242,559,365...242,601,447
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19492
    metabolic process 11797
      small molecule metabolic process 1791
        nucleobase-containing small molecule metabolic process 577
          nucleoside phosphate metabolic process 510
            nucleoside diphosphate metabolic process 165
              nucleoside diphosphate catabolic process 14
                deoxyribonucleoside diphosphate catabolic process + 1
                purine nucleoside diphosphate catabolic process + 8
                pyrimidine nucleoside diphosphate catabolic process + 2
                ribonucleoside diphosphate catabolic process + 10
Path 2
Term Annotations click to browse term
  biological_process 19492
    metabolic process 11797
      cellular metabolic process 10717
        cellular nitrogen compound metabolic process 6561
          nucleobase-containing compound metabolic process 5378
            nucleobase-containing small molecule metabolic process 577
              nucleoside phosphate metabolic process 510
                nucleoside phosphate catabolic process 78
                  nucleoside diphosphate catabolic process 14
                    deoxyribonucleoside diphosphate catabolic process + 1
                    purine nucleoside diphosphate catabolic process + 8
                    pyrimidine nucleoside diphosphate catabolic process + 2
                    ribonucleoside diphosphate catabolic process + 10
paths to the root