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ONTOLOGY REPORT - ANNOTATIONS


Term:nucleoside diphosphate catabolic process
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Accession:GO:0009134 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of a nucleoside diphosphate, a compound consisting of a nucleobase linked to a deoxyribose or ribose sugar esterified with diphosphate on the sugar.
Synonyms:exact_synonym: nucleoside diphosphate breakdown;   nucleoside diphosphate catabolism;   nucleoside diphosphate degradation


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nucleoside diphosphate catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd3 ectonucleoside triphosphate diphosphohydrolase 3 ISO (MGI:MGI:3043501|PMID:15130768) RGD PMID:15130768 MGI:MGI:3043501 NCBI chr 8:129,201,000...129,232,436
Ensembl chr 8:129,201,669...129,232,677
JBrowse link
ADP catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt9 nudix hydrolase 9 ISO (MGI:MGI:2158549|PMID:11825615) RGD PMID:11825615 MGI:MGI:2158549 NCBI chr14:7,036,809...7,054,739
Ensembl chr14:7,036,820...7,054,548
JBrowse link
dADP catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt18 nudix hydrolase 18 ISO
ISS
(PMID:22556419)
GO_REF:0000024
RGD
UniProt
PMID:22556419 GO_REF:0000024 NCBI chr15:52,265,557...52,268,081
Ensembl chr15:52,265,557...52,268,079
JBrowse link
dGDP catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt18 nudix hydrolase 18 ISO
ISS
(PMID:22556419)
GO_REF:0000024
RGD
UniProt
PMID:22556419 GO_REF:0000024 NCBI chr15:52,265,557...52,268,081
Ensembl chr15:52,265,557...52,268,079
JBrowse link
GDP catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt18 nudix hydrolase 18 ISO
ISS
(PMID:22556419)
GO_REF:0000024
RGD
UniProt
PMID:22556419 GO_REF:0000024 NCBI chr15:52,265,557...52,268,081
Ensembl chr15:52,265,557...52,268,079
JBrowse link
IDP catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt16 nudix hydrolase 16 ISO (PMID:20385596) RGD PMID:20385596 NCBI chr 8:113,673,069...113,675,124
Ensembl chr 8:113,672,758...113,675,128
JBrowse link
G Nudt9 nudix hydrolase 9 ISO (MGI:MGI:2158549|PMID:11825615) RGD PMID:11825615 MGI:MGI:2158549 NCBI chr14:7,036,809...7,054,739
Ensembl chr14:7,036,820...7,054,548
JBrowse link
purine ribonucleoside diphosphate catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd1 ectonucleoside triphosphate diphosphohydrolase 1 ISO (MGI:MGI:2178511|PMID:11929769) RGD PMID:11929769 MGI:MGI:2178511 NCBI chr 1:259,692,020...259,818,922
Ensembl chr 1:259,739,955...259,819,494
JBrowse link
G Entpd2 ectonucleoside triphosphate diphosphohydrolase 2 ISO
IEA
(MGI:MGI:2178511|PMID:11929769)
GO_REF:0000107
RGD
Ensembl
PMID:11929769 GO_REF:0000107, MGI:MGI:2178511 NCBI chr 3:2,617,795...2,623,818
Ensembl chr 3:2,617,805...2,623,445
JBrowse link
ribonucleoside diphosphate catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt5 nudix hydrolase 5 IEA
ISO
ISS
GO_REF:0000107
(PMID:18462755), (PMID:19699693), (PMID:21389046)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:18462755, PMID:19699693, PMID:21389046 GO_REF:0000024, GO_REF:0000107 NCBI chr17:76,387,027...76,410,309
Ensembl chr17:76,387,031...76,410,294
JBrowse link
UDP catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 ISO (PMID:9556635) RGD PMID:9556635 NCBI chr15:51,222,954...51,250,787
Ensembl chr15:51,222,954...51,250,787
JBrowse link
XDP catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt16 nudix hydrolase 16 ISO (PMID:20385596) RGD PMID:20385596 NCBI chr 8:113,673,069...113,675,124
Ensembl chr 8:113,672,758...113,675,128
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20017
    metabolic process 12256
      organic substance metabolic process 11636
        organophosphate metabolic process 971
          nucleoside phosphate metabolic process 510
            nucleoside diphosphate metabolic process 161
              nucleoside diphosphate catabolic process 8
                deoxyribonucleoside diphosphate catabolic process + 1
                purine nucleoside diphosphate catabolic process + 5
                pyrimidine nucleoside diphosphate catabolic process + 1
                ribonucleoside diphosphate catabolic process + 7
Path 2
Term Annotations click to browse term
  biological_process 20017
    metabolic process 12256
      cellular metabolic process 11064
        cellular aromatic compound metabolic process 5708
          nucleobase-containing compound metabolic process 5483
            nucleobase-containing small molecule metabolic process 590
              nucleoside phosphate metabolic process 510
                nucleoside diphosphate metabolic process 161
                  nucleoside diphosphate catabolic process 8
                    deoxyribonucleoside diphosphate catabolic process + 1
                    purine nucleoside diphosphate catabolic process + 5
                    pyrimidine nucleoside diphosphate catabolic process + 1
                    ribonucleoside diphosphate catabolic process + 7
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.