Send us a Message



 Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer VCMap
Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:nucleoside diphosphate catabolic process
go back to main search page
Accession:GO:0009134 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of a nucleoside diphosphate, a compound consisting of a nucleobase linked to a deoxyribose or ribose sugar esterified with diphosphate on the sugar.
Synonyms:exact_synonym: nucleoside diphosphate breakdown;   nucleoside diphosphate catabolism;   nucleoside diphosphate degradation


show annotations for term's descendants           Sort by:
 
nucleoside diphosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd1 ectonucleoside triphosphate diphosphohydrolase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:239,425,515...239,552,323
Ensembl chr 1:239,425,430...239,552,317 		JBrowse link
G Entpd2 ectonucleoside triphosphate diphosphohydrolase 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:8,213,575...8,219,094
Ensembl chr 3:8,213,663...8,226,866 		JBrowse link
G Entpd3 ectonucleoside triphosphate diphosphohydrolase 3 acts_upstream_of_or_within
involved_in		 ISO
IBA		 (MGI:3043501|PMID:15130768)
PMID:21873635		 RGD PMID:15130768 PMID:21873635 MGI:3043501, RGD:13792537 NCBI chr 8:120,246,412...120,277,943
Ensembl chr 8:120,247,121...120,277,943 		JBrowse link
G Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:44,630,873...44,658,706
Ensembl chr15:44,630,873...44,658,706 		JBrowse link
G Entpd5 ectonucleoside triphosphate diphosphohydrolase 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:104,019,095...104,055,311
Ensembl chr 6:104,019,185...104,055,530 		JBrowse link
G Entpd6 ectonucleoside triphosphate diphosphohydrolase 6 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:139,575,659...139,598,163
Ensembl chr 3:139,575,686...139,598,154 		JBrowse link
G Entpd7 ectonucleoside triphosphate diphosphohydrolase 7 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:242,559,365...242,601,044
Ensembl chr 1:242,559,365...242,601,447 		JBrowse link
G Entpd8 ectonucleoside triphosphate diphosphohydrolase 8 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:7,885,277...7,895,517
Ensembl chr 3:7,889,909...7,895,296 		JBrowse link
ADP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ampd3 adenosine monophosphate deaminase 3 involved_in ISO (MGI:5917829|PMID:28746349) RGD PMID:28746349 MGI:5917829 NCBI chr 1:164,884,823...164,929,899
Ensembl chr 1:164,885,320...164,929,887 		JBrowse link
G Entpd1 ectonucleoside triphosphate diphosphohydrolase 1 involved_in ISO MGI:2182811 (MGI:3760051|PMID:17502665) RGD PMID:17502665 MGI:3760051 NCBI chr 1:239,425,515...239,552,323
Ensembl chr 1:239,425,430...239,552,317 		JBrowse link
G Nt5e 5' nucleotidase, ecto involved_in IEA
ISO		 GO_REF:0000107
MGI:3522017 (MGI:5917829|PMID:28746349), (MGI:6478084|PMID:20430891)		 Ensembl
RGD		 PMID:20430891 PMID:28746349 GO_REF:0000107 MGI:5917829 MGI:6478084 NCBI chr 8:89,271,046...89,314,918
Ensembl chr 8:89,270,696...89,314,881 		JBrowse link
G Nudt9 nudix hydrolase 9 acts_upstream_of_or_within ISO (MGI:2158549|PMID:11825615) RGD PMID:11825615 MGI:2158549 NCBI chr14:5,675,376...5,693,332
Ensembl chr14:5,675,382...5,693,142 		JBrowse link
dADP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt18 nudix hydrolase 18 involved_in ISO
ISS		 (PMID:22556419)
GO_REF:0000024		 RGD
UniProt		 PMID:22556419 GO_REF:0000024 NCBI chr15:45,650,597...45,653,985
Ensembl chr15:45,650,664...45,653,963 		JBrowse link
dGDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt18 nudix hydrolase 18 involved_in ISO
ISS		 (PMID:22556419)
GO_REF:0000024		 RGD
UniProt		 PMID:22556419 GO_REF:0000024 NCBI chr15:45,650,597...45,653,985
Ensembl chr15:45,650,664...45,653,963 		JBrowse link
GDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 involved_in ISO (PMID:10858452) RGD PMID:10858452 NCBI chr15:44,630,873...44,658,706
Ensembl chr15:44,630,873...44,658,706 		JBrowse link
G Nudt18 nudix hydrolase 18 involved_in ISO
ISS		 (PMID:22556419)
GO_REF:0000024		 RGD
UniProt		 PMID:22556419 GO_REF:0000024 NCBI chr15:45,650,597...45,653,985
Ensembl chr15:45,650,664...45,653,963 		JBrowse link
IDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt16 nudix hydrolase 16 involved_in ISO (PMID:20385596) RGD PMID:20385596 NCBI chr 8:105,739,927...105,741,982
Ensembl chr 8:105,739,623...105,741,998 		JBrowse link
G Nudt9 nudix hydrolase 9 acts_upstream_of_or_within ISO (MGI:2158549|PMID:11825615) RGD PMID:11825615 MGI:2158549 NCBI chr14:5,675,376...5,693,332
Ensembl chr14:5,675,382...5,693,142 		JBrowse link
purine ribonucleoside diphosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd1 ectonucleoside triphosphate diphosphohydrolase 1 acts_upstream_of_or_within ISO (MGI:2178511|PMID:11929769) RGD PMID:11929769 MGI:2178511 NCBI chr 1:239,425,515...239,552,323
Ensembl chr 1:239,425,430...239,552,317 		JBrowse link
G Entpd2 ectonucleoside triphosphate diphosphohydrolase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(MGI:2178511|PMID:11929769)		 Ensembl
RGD		 PMID:11929769 GO_REF:0000107 MGI:2178511 NCBI chr 3:8,213,575...8,219,094
Ensembl chr 3:8,213,663...8,226,866 		JBrowse link
ribonucleoside diphosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt5 nudix hydrolase 5 involved_in ISS
ISO		 GO_REF:0000024
(PMID:18462755), (PMID:19699693), (PMID:21389046)		 UniProt
RGD		 PMID:18462755 PMID:19699693 PMID:21389046 GO_REF:0000024 NCBI chr17:72,435,690...72,459,008
Ensembl chr17:72,435,697...72,459,001 		JBrowse link
UDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 involved_in IBA
ISO		 PMID:21873635
(PMID:10858452), (PMID:9556635)		 RGD PMID:9556635 PMID:10858452 PMID:21873635 RGD:13792537 NCBI chr15:44,630,873...44,658,706
Ensembl chr15:44,630,873...44,658,706 		JBrowse link
G Entpd5 ectonucleoside triphosphate diphosphohydrolase 5 involved_in ISS
ISO		 GO_REF:0000024
(MGI:1927266|PMID:10369669), (MGI:4881347|PMID:21074248)		 UniProt
RGD		 PMID:10369669 PMID:21074248 GO_REF:0000024 MGI:1927266 MGI:4881347 NCBI chr 6:104,019,095...104,055,311
Ensembl chr 6:104,019,185...104,055,530 		JBrowse link
G Entpd7 ectonucleoside triphosphate diphosphohydrolase 7 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:242,559,365...242,601,044
Ensembl chr 1:242,559,365...242,601,447 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18734
    metabolic process 11458
      small molecule metabolic process 1805
        nucleobase-containing small molecule metabolic process 593
          nucleoside phosphate metabolic process 529
            nucleoside diphosphate metabolic process 156
              nucleoside diphosphate catabolic process 14
                deoxyribonucleoside diphosphate catabolic process + 1
                purine nucleoside diphosphate catabolic process + 8
                pyrimidine nucleoside diphosphate catabolic process + 3
                ribonucleoside diphosphate catabolic process + 11
Path 2
Term Annotations click to browse term
  biological_process 18734
    metabolic process 11458
      cellular metabolic process 9697
        cellular nitrogen compound metabolic process 6417
          nucleobase-containing compound metabolic process 5335
            nucleobase-containing small molecule metabolic process 593
              nucleoside phosphate metabolic process 529
                nucleoside phosphate catabolic process 78
                  nucleoside diphosphate catabolic process 14
                    deoxyribonucleoside diphosphate catabolic process + 1
                    purine nucleoside diphosphate catabolic process + 8
                    pyrimidine nucleoside diphosphate catabolic process + 3
                    ribonucleoside diphosphate catabolic process + 11
paths to the root