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ONTOLOGY REPORT - ANNOTATIONS

Term:nucleoside diphosphate metabolic process
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Accession:GO:0009132 term browser browse the term
Definition:The chemical reactions and pathways involving a nucleoside diphosphate, a compound consisting of a nucleobase linked to a deoxyribose or ribose sugar esterified with diphosphate on the sugar.
Synonyms:exact_synonym: nucleoside diphosphate metabolism

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nucleoside diphosphate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt7 nudix hydrolase 7 involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936475:26,079,298...26,095,466
Ensembl chrNW_004936475:26,079,275...26,089,889 		JBrowse link
ADP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak1 adenylate kinase 1 involved_in ISO
IEA		 RGD
UniProt		 PMID:19049516 GO_REF:0000104 RGD:5134369 NCBI chrNW_004936487:15,507,663...15,517,401
Ensembl chrNW_004936487:15,507,498...15,517,469 		JBrowse link
G Ak2 adenylate kinase 2 involved_in ISO
IEA		 RGD
UniProt
InterPro		 PMID:5123889 GO_REF:0000002 GO_REF:0000104 RGD:5490208 NCBI chrNW_004936474:15,887,014...15,908,522 JBrowse link
G Ak3 adenylate kinase 3 involved_in ISO
IEA		 RGD
UniProt		 PMID:5010295 PMID:5123889 GO_REF:0000104 RGD:5490208 RGD:5490216 NCBI chrNW_004936503:497,391...517,011
Ensembl chrNW_004936503:496,965...516,888 		JBrowse link
G Ak4 adenylate kinase 4 involved_in IEA UniProt GO_REF:0000104 NCBI chrNW_004936692:2,593,409...2,654,583 JBrowse link
ADP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ampd3 adenosine monophosphate deaminase 3 involved_in ISO (MGI:5917829|PMID:28746349) MGI PMID:28746349 MGI:5917829 NCBI chrNW_004936528:7,847,156...7,891,585
Ensembl chrNW_004936528:7,848,096...7,890,627 		JBrowse link
G Nt5e 5'-nucleotidase ecto involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936510:5,797,218...5,846,118
Ensembl chrNW_004936510:5,797,212...5,846,124 		JBrowse link
G Nudt9 nudix hydrolase 9 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2158549|PMID:11825615) MGI
Ensembl		 PMID:11825615 GO_REF:0000107 MGI:2158549 NCBI chrNW_004936905:586,160...616,490
Ensembl chrNW_004936905:584,558...616,508 		JBrowse link
ADP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ampd3 adenosine monophosphate deaminase 3 involved_in
acts_upstream_of_or_within		 ISO (MGI:5529149|PMID:23078545)
(MGI:5476853|PMID:23439682)		 CACAO
MGI		 PMID:23078545 PMID:23439682 MGI:5476853 MGI:5529149 NCBI chrNW_004936528:7,847,156...7,891,585
Ensembl chrNW_004936528:7,848,096...7,890,627 		JBrowse link
G Bad BCL2 associated agonist of cell death involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:4,924,349...4,933,683
Ensembl chrNW_004936599:4,924,789...4,933,368 		JBrowse link
CDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine/uridine monophosphate kinase 1 ISO RGD PMID:3010881 RGD:5133253 NCBI chrNW_004936474:28,147,459...28,180,779
Ensembl chrNW_004936474:28,147,085...28,182,043 		JBrowse link
dADP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt18 nudix hydrolase 18 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936555:5,929,262...5,932,334
Ensembl chrNW_004936555:5,928,601...5,932,400 		JBrowse link
dCDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine/uridine monophosphate kinase 1 ISO RGD PMID:192455 RGD:5133256 NCBI chrNW_004936474:28,147,459...28,180,779
Ensembl chrNW_004936474:28,147,085...28,182,043 		JBrowse link
dGDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Guk1 guanylate kinase 1 involved_in ISO (PMID:31201273) RGD
UniProt		 PMID:4307347 PMID:31201273 RGD:5147877 NCBI chrNW_004936864:76,707...86,479
Ensembl chrNW_004936864:76,128...79,520 		JBrowse link
dGDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt18 nudix hydrolase 18 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936555:5,929,262...5,932,334
Ensembl chrNW_004936555:5,928,601...5,932,400 		JBrowse link
dTDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk2 cytidine/uridine monophosphate kinase 2 ISO RGD PMID:192455 RGD:5133256 NCBI chrNW_004936532:3,896,654...3,908,184
Ensembl chrNW_004936532:3,895,755...3,908,367 		JBrowse link
G Dtymk deoxythymidylate kinase involved_in
acts_upstream_of_or_within		 ISO (PMID:12614151)
(MGI:77260|PMID:8845311)		 RGD
UniProt
MGI		 PMID:220041 PMID:8845311 PMID:12614151 MGI:77260 RGD:5133687 NCBI chrNW_004936745:282,199...289,273 JBrowse link
dUDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cmpk1 cytidine/uridine monophosphate kinase 1 ISO RGD PMID:3010881 RGD:5133253 NCBI chrNW_004936474:28,147,459...28,180,779
Ensembl chrNW_004936474:28,147,085...28,182,043 		JBrowse link
G Cmpk2 cytidine/uridine monophosphate kinase 2 ISO RGD PMID:192455 RGD:5133256 NCBI chrNW_004936532:3,896,654...3,908,184
Ensembl chrNW_004936532:3,895,755...3,908,367 		JBrowse link
GDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Guk1 guanylate kinase 1 ISO RGD PMID:4307347 RGD:5147877 NCBI chrNW_004936864:76,707...86,479
Ensembl chrNW_004936864:76,128...79,520 		JBrowse link
GDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936555:6,896,661...6,920,333
Ensembl chrNW_004936555:6,893,393...6,919,584 		JBrowse link
G Nudt18 nudix hydrolase 18 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936555:5,929,262...5,932,334
Ensembl chrNW_004936555:5,928,601...5,932,400 		JBrowse link
GDP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Guk1 guanylate kinase 1 involved_in IEA GOC GO_REF:0000108 NCBI chrNW_004936864:76,707...86,479
Ensembl chrNW_004936864:76,128...79,520 		JBrowse link
IDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt9 nudix hydrolase 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936905:586,160...616,490
Ensembl chrNW_004936905:584,558...616,508 		JBrowse link
nucleoside diphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd8 ectonucleoside triphosphate diphosphohydrolase 8 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3043620|PMID:15122917) MGI
Ensembl		 PMID:15122917 GO_REF:0000107 MGI:3043620 NCBI chrNW_004936669:629,400...632,898
Ensembl chrNW_004936669:615,375...634,309 		JBrowse link
nucleoside diphosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd3 ectonucleoside triphosphate diphosphohydrolase 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3043501|PMID:15130768) MGI
Ensembl		 PMID:15130768 GO_REF:0000107 MGI:3043501 NCBI chrNW_004936473:29,348,370...29,382,258
Ensembl chrNW_004936473:29,348,318...29,382,270 		JBrowse link
purine ribonucleoside diphosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd2 ectonucleoside triphosphate diphosphohydrolase 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2178511|PMID:11929769) MGI
Ensembl		 PMID:11929769 GO_REF:0000107 MGI:2178511 NCBI chrNW_004936669:901,192...906,765
Ensembl chrNW_004936669:901,104...906,782 		JBrowse link
ribonucleoside diphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ak4 adenylate kinase 4 involved_in ISO (PMID:24767988) UniProt PMID:24767988 NCBI chrNW_004936692:2,593,409...2,654,583 JBrowse link
ribonucleoside diphosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt5 nudix hydrolase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936484:3,148,955...3,169,527
Ensembl chrNW_004936484:3,156,586...3,169,146 		JBrowse link
ribonucleoside diphosphate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rrm1 ribonucleotide reductase catalytic subunit M1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936498:815,401...848,749
Ensembl chrNW_004936498:815,399...848,793 		JBrowse link
G Rrm2 ribonucleotide reductase regulatory subunit M2 involved_in ISO (PMID:16376858)
(MGI:6810812|PMID:12578384)		 ComplexPortal PMID:12578384 PMID:16376858 MGI:6810812 NCBI chrNW_004936532:6,348,041...6,390,144 JBrowse link
G Rrm2b ribonucleotide reductase regulatory TP53 inducible subunit M2B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:41,354,387...41,401,308
Ensembl chrNW_004936470:41,354,287...41,401,317 		JBrowse link
UDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936493:5,308,268...5,332,934
Ensembl chrNW_004936493:5,310,228...5,332,918 		JBrowse link
G Cmpk1 cytidine/uridine monophosphate kinase 1 involved_in ISO
IEA		 RGD
Ensembl		 PMID:3010881 GO_REF:0000107 RGD:5133253 NCBI chrNW_004936474:28,147,459...28,180,779
Ensembl chrNW_004936474:28,147,085...28,182,043 		JBrowse link
G Dhodh dihydroorotate dehydrogenase (quinone) involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:21,863,627...21,877,660
Ensembl chrNW_004936475:21,862,166...21,877,711 		JBrowse link
G Umps uridine monophosphate synthetase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936725:553,278...564,846
Ensembl chrNW_004936725:549,804...565,141 		JBrowse link
UDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936555:6,896,661...6,920,333
Ensembl chrNW_004936555:6,893,393...6,919,584 		JBrowse link
G Entpd5 ectonucleoside triphosphate diphosphohydrolase 5 (inactive) involved_in ISO (MGI:1927266|PMID:10369669), (MGI:4881347|PMID:21074248) UniProt PMID:10369669 PMID:21074248 MGI:1927266 MGI:4881347 NCBI chrNW_004936488:3,241,004...3,280,360
Ensembl chrNW_004936488:3,237,772...3,279,947 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15054
    metabolic process 9000
      organic substance metabolic process 8486
        organophosphate metabolic process 780
          nucleoside phosphate metabolic process 417
            nucleoside diphosphate metabolic process 26
              deoxyribonucleoside diphosphate metabolic process + 5
              nucleoside diphosphate biosynthetic process + 12
              nucleoside diphosphate catabolic process + 9
              purine nucleoside diphosphate metabolic process + 12
              pyrimidine nucleoside diphosphate metabolic process + 8
              ribonucleoside diphosphate metabolic process + 21
Path 2
Term Annotations click to browse term
  biological_process 15054
    metabolic process 9000
      nitrogen compound metabolic process 7243
        cellular nitrogen compound metabolic process 4890
          nucleobase-containing compound metabolic process 4339
            nucleobase-containing small molecule metabolic process 471
              nucleoside phosphate metabolic process 417
                nucleoside diphosphate metabolic process 26
                  deoxyribonucleoside diphosphate metabolic process + 5
                  nucleoside diphosphate biosynthetic process + 12
                  nucleoside diphosphate catabolic process + 9
                  purine nucleoside diphosphate metabolic process + 12
                  pyrimidine nucleoside diphosphate metabolic process + 8
                  ribonucleoside diphosphate metabolic process + 21
paths to the root