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ONTOLOGY REPORT - ANNOTATIONS

Term:nucleoside diphosphate metabolic process
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Accession:GO:0009132 term browser browse the term
Definition:The chemical reactions and pathways involving a nucleoside diphosphate, a compound consisting of a nucleobase linked to a deoxyribose or ribose sugar esterified with diphosphate on the sugar.
Synonyms:exact_synonym: nucleoside diphosphate metabolism


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nucleoside diphosphate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NUDT7 nudix hydrolase 7 involved_in IEA InterPro GO_REF:0000002 NCBI chr 5:73,515,819...73,527,780
Ensembl chr 5:73,516,166...73,527,716 		JBrowse link
ADP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AK1 adenylate kinase 1 involved_in ISO
IEA		 RGD
UniProt		 PMID:19049516 GO_REF:0000104 RGD:5134369 NCBI chr 9:55,539,179...55,548,132
Ensembl chr 9:55,539,260...55,548,132 		JBrowse link
G AK2 adenylate kinase 2 involved_in ISO
IEA		 RGD
UniProt
InterPro		 PMID:5123889 GO_REF:0000002 GO_REF:0000104 RGD:5490208 NCBI chr 2:68,342,769...68,371,769
Ensembl chr 2:68,350,057...68,371,090 		JBrowse link
G AK3 adenylate kinase 3 involved_in IEA UniProt GO_REF:0000104 NCBI chr 1:93,086,617...93,095,023 JBrowse link
G DNAJC6 DnaJ heat shock protein family (Hsp40) member C6 involved_in IEA UniProt GO_REF:0000104 NCBI chr 5:45,055,294...45,119,595
Ensembl chr 5:44,884,283...45,120,203 		JBrowse link
G LOC102152410 GTP:AMP phosphotransferase AK3, mitochondrial-like involved_in IEA UniProt GO_REF:0000104 NCBI chr27:26,269,386...26,270,419 JBrowse link
G LOC102156938 adenylate kinase 2, mitochondrial-like involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000104 NCBI chr38:1,911,025...1,912,095 JBrowse link
G LOC102157398 GTP:AMP phosphotransferase AK3, mitochondrial-like involved_in IEA UniProt GO_REF:0000104 NCBI chr11:5,137,859...5,140,002 JBrowse link
G LOC119866317 GTP:AMP phosphotransferase AK3, mitochondrial-like involved_in IEA UniProt GO_REF:0000104
G LOC119881600 GTP:AMP phosphotransferase AK3, mitochondrial-like involved_in IEA UniProt GO_REF:0000104
G LOC480491 GTP:AMP phosphotransferase AK3, mitochondrial involved_in ISO
IEA		 RGD
UniProt		 PMID:5010295 PMID:5123889 GO_REF:0000104 RGD:5490208 RGD:5490216 NCBI chr 9:10,282,452...10,283,479 JBrowse link
G LOC608853 GTP:AMP phosphotransferase AK3, mitochondrial-like involved_in IEA UniProt GO_REF:0000104 NCBI chr 8:7,105,214...7,106,213 JBrowse link
ADP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMPD3 adenosine monophosphate deaminase 3 involved_in ISO (MGI:5917829|PMID:28746349) MGI PMID:28746349 MGI:5917829
G ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 involved_in ISO (MGI:3760051|PMID:17502665) MGI PMID:17502665 MGI:3760051 NCBI chr28:9,181,851...9,311,835
Ensembl chr28:9,211,050...9,323,939 		JBrowse link
G NT5E 5'-nucleotidase ecto involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:45,491,028...45,520,019
Ensembl chr12:45,491,733...45,518,405 		JBrowse link
G NUDT9 nudix hydrolase 9 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2158549|PMID:11825615) MGI
Ensembl		 PMID:11825615 GO_REF:0000107 MGI:2158549 NCBI chr32:10,862,532...10,887,162
Ensembl chr32:10,862,527...10,886,863 		JBrowse link
ADP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMPD3 adenosine monophosphate deaminase 3 involved_in
acts_upstream_of_or_within		 ISO (MGI:5529149|PMID:23078545)
(MGI:5476853|PMID:23439682)		 CACAO
MGI		 PMID:23078545 PMID:23439682 MGI:5476853 MGI:5529149
G BAD BCL2 associated agonist of cell death involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:52,781,335...52,791,789
Ensembl chr18:52,781,921...52,791,405 		JBrowse link
CDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CMPK1 cytidine/uridine monophosphate kinase 1 ISO RGD PMID:3010881 RGD:5133253 NCBI chr15:13,324,235...13,357,387
Ensembl chr15:13,326,185...13,358,152 		JBrowse link
dADP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NUDT18 nudix hydrolase 18 involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:35,139,580...35,144,066
Ensembl chr25:35,140,969...35,143,063 		JBrowse link
dCDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CMPK1 cytidine/uridine monophosphate kinase 1 ISO RGD PMID:192455 RGD:5133256 NCBI chr15:13,324,235...13,357,387
Ensembl chr15:13,326,185...13,358,152 		JBrowse link
dGDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GUK1 guanylate kinase 1 involved_in ISO (PMID:31201273) RGD
UniProt		 PMID:4307347 PMID:31201273 RGD:5147877 NCBI chr14:820,048...826,694
Ensembl chr14:820,093...827,250 		JBrowse link
dGDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NUDT18 nudix hydrolase 18 involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:35,139,580...35,144,066
Ensembl chr25:35,140,969...35,143,063 		JBrowse link
dTDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CMPK2 cytidine/uridine monophosphate kinase 2 ISO RGD PMID:192455 RGD:5133256 NCBI chr17:4,466,615...4,478,546 JBrowse link
G DTYMK deoxythymidylate kinase involved_in
acts_upstream_of_or_within		 ISO
IEA		 (MGI:77260|PMID:8845311) RGD
InterPro
MGI		 PMID:220041 PMID:8845311 GO_REF:0000002 MGI:77260 RGD:5133687 NCBI chr25:51,520,307...51,535,407
Ensembl chr25:51,520,581...51,526,069
Ensembl chr25:51,520,581...51,526,069 		JBrowse link
dUDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CMPK1 cytidine/uridine monophosphate kinase 1 ISO RGD PMID:3010881 RGD:5133253 NCBI chr15:13,324,235...13,357,387
Ensembl chr15:13,326,185...13,358,152 		JBrowse link
G CMPK2 cytidine/uridine monophosphate kinase 2 ISO RGD PMID:192455 RGD:5133256 NCBI chr17:4,466,615...4,478,546 JBrowse link
GDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GUK1 guanylate kinase 1 ISO RGD PMID:4307347 RGD:5147877 NCBI chr14:820,048...826,694
Ensembl chr14:820,093...827,250 		JBrowse link
GDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENTPD4 ectonucleoside triphosphate diphosphohydrolase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:34,032,104...34,067,772
Ensembl chr25:34,032,055...34,063,281 		JBrowse link
G NUDT18 nudix hydrolase 18 involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:35,139,580...35,144,066
Ensembl chr25:35,140,969...35,143,063 		JBrowse link
GDP metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GUK1 guanylate kinase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:81565|PMID:8663313) GOC
GOC		 PMID:8663313 GO_REF:0000108 MGI:81565 NCBI chr14:820,048...826,694
Ensembl chr14:820,093...827,250 		JBrowse link
nucleoside diphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENTPD8 ectonucleoside triphosphate diphosphohydrolase 8 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3043620|PMID:15122917) MGI
Ensembl		 PMID:15122917 GO_REF:0000107 MGI:3043620 NCBI chr 9:48,301,499...48,306,210
Ensembl chr 9:48,303,206...48,305,992 		JBrowse link
nucleoside diphosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENTPD3 ectonucleoside triphosphate diphosphohydrolase 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3043501|PMID:15130768) MGI
Ensembl		 PMID:15130768 GO_REF:0000107 MGI:3043501 NCBI chr23:9,858,328...9,891,244
Ensembl chr23:9,858,764...9,890,483 		JBrowse link
purine ribonucleoside diphosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENTPD1 ectonucleoside triphosphate diphosphohydrolase 1 acts_upstream_of_or_within ISO (MGI:2178511|PMID:11929769) MGI PMID:11929769 MGI:2178511 NCBI chr28:9,181,851...9,311,835
Ensembl chr28:9,211,050...9,323,939 		JBrowse link
G ENTPD2 ectonucleoside triphosphate diphosphohydrolase 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2178511|PMID:11929769) MGI
Ensembl		 PMID:11929769 GO_REF:0000107 MGI:2178511 NCBI chr 9:48,589,408...48,594,852
Ensembl chr 9:48,570,891...48,594,452 		JBrowse link
ribonucleoside diphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DNAJC6 DnaJ heat shock protein family (Hsp40) member C6 involved_in ISO (PMID:24767988) UniProt PMID:24767988 NCBI chr 5:45,055,294...45,119,595
Ensembl chr 5:44,884,283...45,120,203 		JBrowse link
ribonucleoside diphosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NUDT5 nudix hydrolase 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:24,239,632...24,266,763
Ensembl chr 2:24,239,627...24,264,469 		JBrowse link
ribonucleoside diphosphate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RRM1 ribonucleotide reductase catalytic subunit M1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:26,595,838...26,631,476
Ensembl chr21:26,595,914...26,631,135 		JBrowse link
G RRM2 ribonucleotide reductase regulatory subunit M2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:7,106,515...7,113,868
Ensembl chr17:7,104,961...7,122,939 		JBrowse link
G RRM2B ribonucleotide reductase regulatory TP53 inducible subunit M2B involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:3,774,725...3,838,576
Ensembl chr13:3,799,025...3,837,934 		JBrowse link
UDP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CAD carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:21,198,839...21,221,897
Ensembl chr17:21,197,826...21,221,635 		JBrowse link
G CMPK1 cytidine/uridine monophosphate kinase 1 involved_in ISO
IEA		 RGD
Ensembl		 PMID:3010881 GO_REF:0000107 RGD:5133253 NCBI chr15:13,324,235...13,357,387
Ensembl chr15:13,326,185...13,358,152 		JBrowse link
G DHODH dihydroorotate dehydrogenase (quinone) involved_in ISO (MGI:6282496|PMID:30449682), (MGI:6720231|PMID:6249586) MGI PMID:6249586 PMID:30449682 MGI:6282496 MGI:6720231 NCBI chr 5:77,756,411...77,766,207
Ensembl chr 5:77,756,407...77,774,090 		JBrowse link
G UMPS uridine monophosphate synthetase involved_in IEA Ensembl GO_REF:0000107 NCBI chr33:27,754,592...27,782,517
Ensembl chr33:27,754,643...27,782,514 		JBrowse link
UDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENTPD4 ectonucleoside triphosphate diphosphohydrolase 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:34,032,104...34,067,772
Ensembl chr25:34,032,055...34,063,281 		JBrowse link
G ENTPD5 ectonucleoside triphosphate diphosphohydrolase 5 (inactive) involved_in ISO (MGI:1927266|PMID:10369669), (MGI:4881347|PMID:21074248) UniProt PMID:10369669 PMID:21074248 MGI:1927266 MGI:4881347 NCBI chr 8:47,193,463...47,245,865
Ensembl chr 8:47,196,439...47,229,964 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16581
    metabolic process 10171
      organic substance metabolic process 9609
        organophosphate metabolic process 833
          nucleoside phosphate metabolic process 462
            nucleoside diphosphate metabolic process 34
              deoxyribonucleoside diphosphate metabolic process + 5
              nucleoside diphosphate biosynthetic process + 19
              nucleoside diphosphate catabolic process + 10
              purine nucleoside diphosphate metabolic process + 20
              pyrimidine nucleoside diphosphate metabolic process + 8
              ribonucleoside diphosphate metabolic process + 29
Path 2
Term Annotations click to browse term
  biological_process 16581
    metabolic process 10171
      nitrogen compound metabolic process 8129
        cellular nitrogen compound metabolic process 5590
          nucleobase-containing compound metabolic process 4793
            nucleobase-containing small molecule metabolic process 519
              nucleoside phosphate metabolic process 462
                nucleoside diphosphate metabolic process 34
                  deoxyribonucleoside diphosphate metabolic process + 5
                  nucleoside diphosphate biosynthetic process + 19
                  nucleoside diphosphate catabolic process + 10
                  purine nucleoside diphosphate metabolic process + 20
                  pyrimidine nucleoside diphosphate metabolic process + 8
                  ribonucleoside diphosphate metabolic process + 29
paths to the root