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ONTOLOGY REPORT - ANNOTATIONS


Term:pyrimidine nucleoside monophosphate biosynthetic process
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Accession:GO:0009130 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of pyrimidine nucleoside monophosphate, a compound consisting of a pyrimidine base linked to a ribose or deoxyribose sugar esterified with phosphate on the sugar.
Synonyms:exact_synonym: pyrimidine nucleoside monophosphate anabolism;   pyrimidine nucleoside monophosphate biosynthesis;   pyrimidine nucleoside monophosphate formation;   pyrimidine nucleoside monophosphate synthesis



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'de novo' UMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CAD carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in IEA UniProt
Ensembl
UniProt
GO_REF:0000041 GO_REF:0000107 NCBI chr 3:111,887,017...111,914,511
Ensembl chr 3:111,887,020...111,914,495
JBrowse link
G DHODH dihydroorotate dehydrogenase (quinone) involved_in IEA UniProt
Ensembl
UniProt
GO_REF:0000041 GO_REF:0000107 NCBI chr 6:14,942,898...14,956,000
Ensembl chr 6:14,942,933...14,956,000
JBrowse link
G UMPS uridine monophosphate synthetase involved_in IEA UniProt
InterPro
Ensembl
UniProt
GO_REF:0000002 GO_REF:0000041 GO_REF:0000107 NCBI chr13:135,611,857...135,650,656
Ensembl chr13:135,610,058...135,650,604
JBrowse link
CMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G UCK1 uridine-cytidine kinase 1 involved_in IEA GOC GO_REF:0000108 NCBI chr 1:271,448,362...271,453,811
Ensembl chr 1:271,448,364...271,453,816
JBrowse link
G UCK2 uridine-cytidine kinase 2 involved_in IEA GOC GO_REF:0000108 NCBI chr 4:84,838,793...84,919,231
Ensembl chr 4:84,838,802...84,919,236
JBrowse link
dTMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCTD dCMP deaminase involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr15:44,466,312...44,492,594
Ensembl chr15:44,466,304...44,492,406
JBrowse link
G DUT deoxyuridine triphosphatase involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 1:123,451,207...123,462,267
Ensembl chr 1:123,451,212...123,462,232
JBrowse link
G SHMT1 serine hydroxymethyltransferase 1 involved_in ISO (MGI:3849912|PMID:19513116) BHF-UCL PMID:19513116 MGI:3849912 NCBI chr12:60,414,421...60,435,451
Ensembl chr12:60,414,446...60,435,450
JBrowse link
G TYMS thymidylate synthetase involved_in IEA
IBA
ISO
(PMID:21873635) InterPro
Ensembl
GO_Central
InterPro
GO_Central
RGD
PMID:9894005 PMID:21873635 GO_REF:0000002 GO_REF:0000107 RGD:1545055 NCBI chr 6:105,642,730...105,660,279
Ensembl chr 6:105,640,031...105,660,601
JBrowse link
dUMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCTD dCMP deaminase involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr15:44,466,312...44,492,594
Ensembl chr15:44,466,304...44,492,406
JBrowse link
G DUT deoxyuridine triphosphatase involved_in IEA
IBA
ISO
(PMID:21873635) UniProt
UniProt
InterPro
GO_Central
RGD
GO_Central
PMID:1315924 PMID:3032103 PMID:21873635 GO_REF:0000002 GO_REF:0000041 GO_REF:0000104 RGD:2300191 RGD:2301218 NCBI chr 1:123,451,207...123,462,267
Ensembl chr 1:123,451,212...123,462,232
JBrowse link
UMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G UCK1 uridine-cytidine kinase 1 acts_upstream_of_or_within ISO (MGI:84399|PMID:8951040) GOC PMID:8951040 MGI:84399 NCBI chr 1:271,448,362...271,453,811
Ensembl chr 1:271,448,364...271,453,816
JBrowse link
G UCKL1 uridine-cytidine kinase 1 like 1 involved_in IEA GOC GO_REF:0000108 NCBI chr17:62,785,419...62,796,396
Ensembl chr17:62,785,419...62,807,552
JBrowse link
G UMPS uridine monophosphate synthetase involved_in ISO
IBA
IEA
(PMID:21873635) RGD
GO_Central
Ensembl
GO_Central
PMID:6134725 PMID:21873635 GO_REF:0000107 RGD:5132277 NCBI chr13:135,611,857...135,650,656
Ensembl chr13:135,610,058...135,650,604
JBrowse link
G UPRT uracil phosphoribosyltransferase homolog ISO RGD PMID:1476792 RGD:5132591 NCBI chr  X:60,426,955...60,448,174
Ensembl chr  X:60,426,975...60,451,480
JBrowse link
UMP salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDA cytidine deaminase involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 6:78,824,248...78,849,154
Ensembl chr 6:78,824,284...78,879,462
JBrowse link
G PINK1 PTEN induced kinase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:78,863,195...78,884,663
Ensembl chr 6:78,863,190...78,884,644
JBrowse link
G UCK1 uridine-cytidine kinase 1 involved_in IEA UniProt
Ensembl
UniProt
GO_REF:0000041 GO_REF:0000107 NCBI chr 1:271,448,362...271,453,811
Ensembl chr 1:271,448,364...271,453,816
JBrowse link
G UCK2 uridine-cytidine kinase 2 involved_in IEA UniProt
Ensembl
UniProt
GO_REF:0000041 GO_REF:0000107 NCBI chr 4:84,838,793...84,919,231
Ensembl chr 4:84,838,802...84,919,236
JBrowse link
G UCKL1 uridine-cytidine kinase 1 like 1 involved_in IEA UniProt
UniProt
GO_REF:0000041 NCBI chr17:62,785,419...62,796,396
Ensembl chr17:62,785,419...62,807,552
JBrowse link
G UPP1 uridine phosphorylase 1 involved_in IEA UniProt
UniProt
GO_REF:0000041 NCBI chr18:48,418,385...48,440,414
Ensembl chr18:48,418,385...48,440,736
JBrowse link
G UPP2 uridine phosphorylase 2 involved_in IEA UniProt
UniProt
GO_REF:0000041 NCBI chr15:65,088,652...65,131,739
Ensembl chr15:65,088,284...65,131,789
JBrowse link
G ZNF512B zinc finger protein 512B involved_in IEA UniProt
UniProt
GO_REF:0000041 NCBI chr17:62,796,583...62,807,340
Ensembl chr17:62,785,419...62,807,552
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17269
    metabolic process 10885
      organic substance metabolic process 10445
        organophosphate metabolic process 909
          nucleoside phosphate metabolic process 480
            nucleoside monophosphate metabolic process 76
              nucleoside monophosphate biosynthetic process 45
                pyrimidine nucleoside monophosphate biosynthetic process 16
                  pyrimidine deoxyribonucleoside monophosphate biosynthetic process + 4
                  pyrimidine ribonucleoside monophosphate biosynthetic process + 12
Path 2
Term Annotations click to browse term
  biological_process 17269
    metabolic process 10885
      cellular metabolic process 9224
        cellular aromatic compound metabolic process 5398
          nucleobase-containing compound metabolic process 5192
            nucleobase-containing small molecule metabolic process 543
              nucleoside phosphate metabolic process 480
                nucleoside monophosphate metabolic process 76
                  nucleoside monophosphate biosynthetic process 45
                    pyrimidine nucleoside monophosphate biosynthetic process 16
                      pyrimidine deoxyribonucleoside monophosphate biosynthetic process + 4
                      pyrimidine ribonucleoside monophosphate biosynthetic process + 12
paths to the root