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ONTOLOGY REPORT - ANNOTATIONS

Term:pyrimidine nucleoside monophosphate biosynthetic process
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Accession:GO:0009130 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of pyrimidine nucleoside monophosphate, a compound consisting of a pyrimidine base linked to a ribose or deoxyribose sugar esterified with phosphate on the sugar.
Synonyms:exact_synonym: pyrimidine nucleoside monophosphate anabolism;   pyrimidine nucleoside monophosphate biosynthesis;   pyrimidine nucleoside monophosphate formation;   pyrimidine nucleoside monophosphate synthesis

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'de novo' UMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004624738:9,318,213...9,340,765
Ensembl chrNW_004624738:9,318,232...9,340,925 		JBrowse link
G Dhodh dihydroorotate dehydrogenase (quinone) involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004624746:14,254,811...14,268,034
Ensembl chrNW_004624746:14,254,193...14,268,034 		JBrowse link
G Umps uridine monophosphate synthetase involved_in IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000041 NCBI chrNW_004624731:761,235...780,355
Ensembl chrNW_004624731:761,210...779,321 		JBrowse link
dTMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhfr dihydrofolate reductase acts_upstream_of_or_within ISO (PMID:22057276) MGI PMID:22057276 NCBI chrNW_004624743:1,446,643...1,462,319
Ensembl chrNW_004624743:1,446,643...1,461,863 		JBrowse link
G Dut deoxyuridine triphosphatase involved_in ISO (PMID:10952785), (PMID:15322254) MGI PMID:10952785 PMID:15322254 NCBI chrNW_004624731:11,378,882...11,388,677
Ensembl chrNW_004624731:11,378,944...11,388,057 		JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 involved_in
acts_upstream_of_or_within 		IEA
ISO 		(PMID:22057276) Ensembl
MGI		 PMID:22057276 GO_REF:0000107 NCBI chrNW_004624849:3,108,875...3,146,669
Ensembl chrNW_004624849:3,114,876...3,146,248 		JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 acts_upstream_of_or_within ISO (PMID:22057276) MGI PMID:22057276 NCBI chrNW_004624802:10,713,276...10,718,391
Ensembl chrNW_004624802:10,713,276...10,719,253 		JBrowse link
G Tyms thymidylate synthetase involved_in ISO
IEA 		RGD
TreeGrafter
Ensembl
InterPro		 PMID:9894005 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 RGD:1545055 NCBI chrNW_004624770:11,138,673...11,149,600
Ensembl chrNW_004624770:11,138,652...11,149,600 		JBrowse link
dUMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dut deoxyuridine triphosphatase involved_in ISO
IEA 		RGD
UniProt
TreeGrafter
InterPro		 PMID:1315924 PMID:3032103 GO_REF:0000002 GO_REF:0000104 GO_REF:0000118 RGD:2300191 RGD:2301218 NCBI chrNW_004624731:11,378,882...11,388,677
Ensembl chrNW_004624731:11,378,944...11,388,057 		JBrowse link
UMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhodh dihydroorotate dehydrogenase (quinone) involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624746:14,254,811...14,268,034
Ensembl chrNW_004624746:14,254,193...14,268,034 		JBrowse link
G Umps uridine monophosphate synthetase involved_in ISO
IEA 		RGD
TreeGrafter		 PMID:6134725 GO_REF:0000118 RGD:5132277 NCBI chrNW_004624731:761,235...780,355
Ensembl chrNW_004624731:761,210...779,321 		JBrowse link
G Uprt uracil phosphoribosyltransferase homolog ISO RGD PMID:1476792 RGD:5132591 NCBI chrNW_004624836:5,473,129...5,502,276
Ensembl chrNW_004624836:5,471,168...5,502,261 		JBrowse link
UMP salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cda cytidine deaminase involved_in ISO (PMID:6498945) MGI PMID:6498945 NCBI chrNW_004624764:5,621,888...5,645,055
Ensembl chrNW_004624764:5,621,899...5,645,850 		JBrowse link
G Uck1 uridine-cytidine kinase 1 involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004624760:4,490,118...4,494,707
Ensembl chrNW_004624760:4,490,086...4,494,924 		JBrowse link
G Uck2 uridine-cytidine kinase 2 involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004624826:4,163,830...4,243,048
Ensembl chrNW_004624826:4,163,798...4,229,640 		JBrowse link
G Uckl1 uridine-cytidine kinase 1 like 1 involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004624741:29,568,980...29,581,923
Ensembl chrNW_004624741:29,566,007...29,581,895 		JBrowse link
G Upp1 uridine phosphorylase 1 involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004624740:5,517,387...5,531,594 JBrowse link
G Upp2 uridine phosphorylase 2 involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004624732:7,574,609...7,641,345
Ensembl chrNW_004624732:7,597,782...7,644,423 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17647
    cellular process 17219
      metabolic process 10996
        biosynthetic process 7897
          nucleobase-containing compound biosynthetic process 4974
            nucleoside phosphate biosynthetic process 273
              nucleoside monophosphate biosynthetic process 44
                pyrimidine nucleoside monophosphate biosynthetic process 15
                  pyrimidine deoxyribonucleoside monophosphate biosynthetic process + 5
                  pyrimidine ribonucleoside monophosphate biosynthetic process + 10
Path 2
Term Annotations click to browse term
  biological_process 17647
    cellular process 17219
      metabolic process 10996
        primary metabolic process 9827
          nucleobase-containing compound metabolic process 5857
            nucleobase-containing small molecule metabolic process 608
              nucleoside phosphate metabolic process 580
                nucleoside monophosphate metabolic process 78
                  pyrimidine nucleoside monophosphate metabolic process 21
                    pyrimidine nucleoside monophosphate biosynthetic process 15
                      pyrimidine deoxyribonucleoside monophosphate biosynthetic process + 5
                      pyrimidine ribonucleoside monophosphate biosynthetic process + 10
paths to the root