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ONTOLOGY REPORT - ANNOTATIONS

Term:pyrimidine nucleoside monophosphate biosynthetic process
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Accession:GO:0009130 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of pyrimidine nucleoside monophosphate, a compound consisting of a pyrimidine base linked to a ribose or deoxyribose sugar esterified with phosphate on the sugar.
Synonyms:exact_synonym: pyrimidine nucleoside monophosphate anabolism;   pyrimidine nucleoside monophosphate biosynthesis;   pyrimidine nucleoside monophosphate formation;   pyrimidine nucleoside monophosphate synthesis


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'de novo' UMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CAD carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in IEA
IDA		 (PMID:25678555) UniProt
UniProt
MGI
Ensembl
MGI		 PMID:25678555 GO_REF:0000041 GO_REF:0000107 NCBI chr 2:27,217,369...27,243,943
Ensembl chr 2:27,217,369...27,243,943 		JBrowse link
G DHODH dihydroorotate dehydrogenase (quinone) involved_in IEA UniProt
UniProt
Ensembl		 GO_REF:0000041 GO_REF:0000107 NCBI chr16:72,008,744...72,027,659
Ensembl chr16:72,008,588...72,027,664 		JBrowse link
G UMPS uridine monophosphate synthetase involved_in IEA UniProt
InterPro
UniProt
Ensembl		 GO_REF:0000002 GO_REF:0000041 GO_REF:0000107 NCBI chr 3:124,730,452...124,749,273
Ensembl chr 3:124,730,433...124,749,273 		JBrowse link
CMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCK deoxycytidine kinase involved_in IEA GOC GO_REF:0000108 NCBI chr 4:70,993,649...71,030,914
Ensembl chr 4:70,992,538...71,030,914 		JBrowse link
G UCK1 uridine-cytidine kinase 1 involved_in IEA GOC GO_REF:0000108 NCBI chr 9:131,523,801...131,531,263
Ensembl chr 9:131,523,801...131,531,264 		JBrowse link
G UCK2 uridine-cytidine kinase 2 involved_in IEA GOC GO_REF:0000108 NCBI chr 1:165,827,614...165,911,618
Ensembl chr 1:165,827,614...165,911,618 		JBrowse link
dTMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCTD dCMP deaminase involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr 4:182,890,091...182,917,611
Ensembl chr 4:182,890,060...182,917,936 		JBrowse link
G DUT deoxyuridine triphosphatase involved_in IDA (PMID:10952785), (PMID:15322254) MGI
MGI		 PMID:10952785 PMID:15322254 NCBI chr15:48,331,095...48,343,373
Ensembl chr15:48,331,011...48,343,373 		JBrowse link
G SHMT1 serine hydroxymethyltransferase 1 involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr17:18,327,873...18,363,550
Ensembl chr17:18,327,860...18,363,563 		JBrowse link
G TYMS thymidylate synthetase involved_in IDA
IEA
IBA
ISO		 (PMID:11278511), (PMID:15093541), (PMID:8845352)
(PMID:21873635)		 CAFA
InterPro
GO_Central
Ensembl
CAFA
GO_Central
RGD		 PMID:8845352 PMID:9894005 PMID:11278511 PMID:15093541 PMID:21873635 GO_REF:0000002 GO_REF:0000107 RGD:1545055 NCBI chr18:657,653...673,578
Ensembl chr18:657,653...673,578 		JBrowse link
dUMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AL353753.1 putative deoxyuridine 5'-triphosphate nucleotidohydrolase-like protein FLJ16323 involved_in IBA
IEA		 (PMID:21873635) GO_Central
GO_Central
InterPro		 PMID:21873635 GO_REF:0000002 NCBI chr 9:26,066,675...26,118,408
Ensembl chr 9:26,066,675...26,118,408 		JBrowse link
G DCTD dCMP deaminase involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr 4:182,890,091...182,917,611
Ensembl chr 4:182,890,060...182,917,936 		JBrowse link
G DUT deoxyuridine triphosphatase involved_in IBA
IEA
ISO		 (PMID:21873635) GO_Central
UniProt
InterPro
GO_Central
RGD
UniProt		 PMID:1315924 PMID:3032103 PMID:21873635 GO_REF:0000002 GO_REF:0000041 GO_REF:0000104 RGD:2300191 RGD:2301218 NCBI chr15:48,331,095...48,343,373
Ensembl chr15:48,331,011...48,343,373 		JBrowse link
UMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CMPK1 cytidine/uridine monophosphate kinase 1 involved_in IEA GOC
GOC		 GO_REF:0000108 NCBI chr 1:47,333,790...47,378,839
Ensembl chr 1:47,333,790...47,378,839 		JBrowse link
G UCK1 uridine-cytidine kinase 1 acts_upstream_of_or_within ISO (MGI:84399|PMID:8951040) GOC PMID:8951040 MGI:84399 NCBI chr 9:131,523,801...131,531,263
Ensembl chr 9:131,523,801...131,531,264 		JBrowse link
G UCKL1 uridine-cytidine kinase 1 like 1 involved_in IEA GOC
GOC		 GO_REF:0000108 NCBI chr20:63,939,829...63,956,416
Ensembl chr20:63,939,829...63,956,416 		JBrowse link
G UMPS uridine monophosphate synthetase involved_in IDA
IEA
IBA
ISO		 (PMID:11730338), (PMID:6893554)
(PMID:11730338), (PMID:18184586), (PMID:6893554), (PMID:9042911)
(PMID:21873635)		 UniProt
UniProt
Ensembl
GO_Central
GO_Central
RGD		 PMID:6134725 PMID:6893554 PMID:9042911 PMID:11730338 PMID:18184586 More... GO_REF:0000107 RGD:5132277 NCBI chr 3:124,730,452...124,749,273
Ensembl chr 3:124,730,433...124,749,273 		JBrowse link
G UPRT uracil phosphoribosyltransferase homolog involved_in ISO
IEA		 RGD
Ensembl		 PMID:1476792 GO_REF:0000107 RGD:5132591 NCBI chr  X:75,156,369...75,304,897
Ensembl chr  X:75,156,388...75,304,885 		JBrowse link
UMP salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDA cytidine deaminase involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr 1:20,589,097...20,618,903
Ensembl chr 1:20,589,086...20,618,903 		JBrowse link
G UCK1 uridine-cytidine kinase 1 involved_in IEA
IDA		 (PMID:11306702) UniProt
UniProt		 PMID:11306702 GO_REF:0000041 NCBI chr 9:131,523,801...131,531,263
Ensembl chr 9:131,523,801...131,531,264 		JBrowse link
G UCK2 uridine-cytidine kinase 2 involved_in IEA
IDA		 (PMID:27239701)
(PMID:11306702), (PMID:27239701)		 UniProt
MGI
UniProt
MGI		 PMID:11306702 PMID:27239701 GO_REF:0000041 NCBI chr 1:165,827,614...165,911,618
Ensembl chr 1:165,827,614...165,911,618 		JBrowse link
G UCKL1 uridine-cytidine kinase 1 like 1 involved_in IEA UniProt
UniProt		 GO_REF:0000041 NCBI chr20:63,939,829...63,956,416
Ensembl chr20:63,939,829...63,956,416 		JBrowse link
G UPP1 uridine phosphorylase 1 involved_in IEA UniProt
Ensembl
UniProt		 GO_REF:0000041 GO_REF:0000107 NCBI chr 7:48,088,704...48,108,736
Ensembl chr 7:48,088,628...48,108,736 		JBrowse link
G UPP2 uridine phosphorylase 2 involved_in IEA UniProt
UniProt		 GO_REF:0000041 NCBI chr 2:157,995,179...158,136,154
Ensembl chr 2:157,876,702...158,136,154 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19656
    metabolic process 13108
      organic substance metabolic process 12631
        organophosphate metabolic process 1110
          nucleoside phosphate metabolic process 628
            nucleoside monophosphate metabolic process 85
              nucleoside monophosphate biosynthetic process 45
                pyrimidine nucleoside monophosphate biosynthetic process 17
                  pyrimidine deoxyribonucleoside monophosphate biosynthetic process + 5
                  pyrimidine ribonucleoside monophosphate biosynthetic process + 12
Path 2
Term Annotations click to browse term
  biological_process 19656
    metabolic process 13108
      cellular metabolic process 10997
        cellular aromatic compound metabolic process 6833
          nucleobase-containing compound metabolic process 6584
            nucleobase-containing small molecule metabolic process 705
              nucleoside phosphate metabolic process 628
                nucleoside monophosphate metabolic process 85
                  nucleoside monophosphate biosynthetic process 45
                    pyrimidine nucleoside monophosphate biosynthetic process 17
                      pyrimidine deoxyribonucleoside monophosphate biosynthetic process + 5
                      pyrimidine ribonucleoside monophosphate biosynthetic process + 12
paths to the root