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ONTOLOGY REPORT - ANNOTATIONS


Term:pyrimidine nucleoside monophosphate biosynthetic process
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Accession:GO:0009130 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of pyrimidine nucleoside monophosphate, a compound consisting of a pyrimidine base linked to a ribose or deoxyribose sugar esterified with phosphate on the sugar.
Synonyms:exact_synonym: pyrimidine nucleoside monophosphate anabolism;   pyrimidine nucleoside monophosphate biosynthesis;   pyrimidine nucleoside monophosphate formation;   pyrimidine nucleoside monophosphate synthesis



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'de novo' UMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CAD carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in IEA UniProt GO_REF:0000041 NCBI chr17:21,198,839...21,221,897
Ensembl chr17:21,197,826...21,221,635
JBrowse link
G DHODH dihydroorotate dehydrogenase (quinone) involved_in IEA UniProt GO_REF:0000041 NCBI chr 5:77,756,411...77,766,207
Ensembl chr 5:77,756,407...77,774,090
JBrowse link
G UMPS uridine monophosphate synthetase involved_in IEA UniProt
Ensembl
InterPro
GO_REF:0000002 GO_REF:0000041 GO_REF:0000107 NCBI chr33:27,754,592...27,782,517
Ensembl chr33:27,754,643...27,782,514
JBrowse link
CMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCK deoxycytidine kinase involved_in IEA GOC GO_REF:0000108 NCBI chr13:60,206,742...60,236,338
Ensembl chr13:60,205,937...60,235,678
JBrowse link
G UCK2 uridine-cytidine kinase 2 involved_in IEA GOC GO_REF:0000108 NCBI chr38:17,475,789...17,555,926
Ensembl chr38:17,479,558...17,579,675
JBrowse link
dTMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCTD dCMP deaminase involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr16:47,350,493...47,376,184
Ensembl chr16:47,350,357...47,375,127
Ensembl chr16:47,350,357...47,375,127
JBrowse link
G DUT deoxyuridine triphosphatase involved_in ISO (PMID:10952785), (PMID:15322254) MGI PMID:10952785 PMID:15322254 NCBI chr30:14,572,766...14,585,621
Ensembl chr30:14,572,602...14,585,530
JBrowse link
G SHMT1 serine hydroxymethyltransferase 1 involved_in ISO (MGI:3849912|PMID:19513116) BHF-UCL PMID:19513116 MGI:3849912 NCBI chr 5:41,221,531...41,248,653
Ensembl chr 5:41,221,562...41,253,166
JBrowse link
G TYMS thymidylate synthetase involved_in ISO
IEA
IBA
(PMID:21873635) RGD
Ensembl
InterPro
InterPro
GO_Central
PMID:9894005 PMID:21873635 GO_REF:0000002 GO_REF:0000107 RGD:1545055 NCBI chr 7:67,487,927...67,497,747
Ensembl chr 7:67,487,927...67,497,747
JBrowse link
dUMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCTD dCMP deaminase involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr16:47,350,493...47,376,184
Ensembl chr16:47,350,357...47,375,127
Ensembl chr16:47,350,357...47,375,127
JBrowse link
G DUT deoxyuridine triphosphatase involved_in ISO
IEA
IBA
(PMID:21873635) RGD
UniProt
GO_Central
PMID:1315924 PMID:3032103 PMID:21873635 GO_REF:0000041 RGD:2300191 RGD:2301218 NCBI chr30:14,572,766...14,585,621
Ensembl chr30:14,572,602...14,585,530
JBrowse link
UMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G UCK1 uridine-cytidine kinase 1 acts_upstream_of_or_within ISO (MGI:84399|PMID:8951040) GOC PMID:8951040 MGI:84399 NCBI chr 9:52,609,972...52,615,655
Ensembl chr 9:52,609,313...52,614,622
JBrowse link
G UCKL1 uridine-cytidine kinase 1 like 1 involved_in IEA GOC GO_REF:0000108 NCBI chr24:47,412,520...47,423,222
Ensembl chr24:47,412,521...47,432,860
JBrowse link
G UMPS uridine monophosphate synthetase involved_in ISO
IEA
IBA
(PMID:21873635) RGD
Ensembl
GO_Central
PMID:6134725 PMID:21873635 GO_REF:0000107 RGD:5132277 NCBI chr33:27,754,592...27,782,517
Ensembl chr33:27,754,643...27,782,514
JBrowse link
G UPRT uracil phosphoribosyltransferase homolog ISO RGD PMID:1476792 RGD:5132591 NCBI chr  X:58,570,623...58,576,980
Ensembl chr  X:58,543,425...58,575,926
JBrowse link
UMP salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDA cytidine deaminase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:78,305,328...78,327,229
Ensembl chr 2:78,304,726...78,327,247
JBrowse link
G UCK1 uridine-cytidine kinase 1 involved_in IEA UniProt GO_REF:0000041 NCBI chr 9:52,609,972...52,615,655
Ensembl chr 9:52,609,313...52,614,622
JBrowse link
G UCK2 uridine-cytidine kinase 2 involved_in IEA UniProt
Ensembl
GO_REF:0000041 GO_REF:0000107 NCBI chr38:17,475,789...17,555,926
Ensembl chr38:17,479,558...17,579,675
JBrowse link
G UCKL1 uridine-cytidine kinase 1 like 1 involved_in IEA UniProt GO_REF:0000041 NCBI chr24:47,412,520...47,423,222
Ensembl chr24:47,412,521...47,432,860
JBrowse link
G UPP1 uridine phosphorylase 1 involved_in ISO (MGI:3586453|PMID:11956089) MGI PMID:11956089 MGI:3586453 NCBI chr18:108,215...120,213 JBrowse link
G ZNF512B zinc finger protein 512B involved_in IEA UniProt GO_REF:0000041 NCBI chr24:47,423,699...47,434,114
Ensembl chr24:47,412,521...47,432,860
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16445
    metabolic process 10769
      organic substance metabolic process 10357
        organophosphate metabolic process 919
          nucleoside phosphate metabolic process 492
            nucleoside monophosphate metabolic process 77
              nucleoside monophosphate biosynthetic process 45
                pyrimidine nucleoside monophosphate biosynthetic process 15
                  pyrimidine deoxyribonucleoside monophosphate biosynthetic process + 4
                  pyrimidine ribonucleoside monophosphate biosynthetic process + 11
Path 2
Term Annotations click to browse term
  biological_process 16445
    metabolic process 10769
      cellular metabolic process 9095
        cellular aromatic compound metabolic process 5323
          nucleobase-containing compound metabolic process 5115
            nucleobase-containing small molecule metabolic process 560
              nucleoside phosphate metabolic process 492
                nucleoside monophosphate metabolic process 77
                  nucleoside monophosphate biosynthetic process 45
                    pyrimidine nucleoside monophosphate biosynthetic process 15
                      pyrimidine deoxyribonucleoside monophosphate biosynthetic process + 4
                      pyrimidine ribonucleoside monophosphate biosynthetic process + 11
paths to the root