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ONTOLOGY REPORT - ANNOTATIONS


Term:pyrimidine nucleoside monophosphate biosynthetic process
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Accession:GO:0009130 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of pyrimidine nucleoside monophosphate, a compound consisting of a pyrimidine base linked to a ribose or deoxyribose sugar esterified with phosphate on the sugar.
Synonyms:exact_synonym: pyrimidine nucleoside monophosphate anabolism;   pyrimidine nucleoside monophosphate biosynthesis;   pyrimidine nucleoside monophosphate formation;   pyrimidine nucleoside monophosphate synthesis


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'de novo' UMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in ISO (MGI:6719158|PMID:33771897)
(PMID:25678555)
MGI PMID:25678555 PMID:33771897 MGI:6719158 NCBI chrNW_004955469:9,203,433...9,227,526
Ensembl chrNW_004955469:9,203,434...9,227,865
JBrowse link
G Dhodh dihydroorotate dehydrogenase (quinone) involved_in ISO (MGI:6282496|PMID:30449682), (MGI:6720231|PMID:6249586) MGI PMID:6249586 PMID:30449682 MGI:6282496 MGI:6720231 NCBI chrNW_004955484:4,699,743...4,713,466
Ensembl chrNW_004955484:4,699,722...4,713,466
JBrowse link
G Umps uridine monophosphate synthetase involved_in ISO (MGI:1289111|PMID:2419341)
(MGI:6720230|PMID:6154574)
MGI PMID:2419341 PMID:6154574 MGI:1289111 MGI:6720230 NCBI chrNW_004955427:23,825,529...23,841,427
Ensembl chrNW_004955427:23,825,523...23,841,152
JBrowse link
dTMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dut deoxyuridine triphosphatase involved_in ISO (PMID:10952785), (PMID:15322254) MGI PMID:10952785 PMID:15322254 NCBI chrNW_004955409:5,574,810...5,584,135
Ensembl chrNW_004955409:5,574,694...5,584,134
JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 involved_in ISO (MGI:3849912|PMID:19513116) BHF-UCL PMID:19513116 MGI:3849912 NCBI chrNW_004955478:10,972,791...11,001,535
Ensembl chrNW_004955478:10,978,139...11,001,202
JBrowse link
G Tyms thymidylate synthetase involved_in ISO (MGI:5300404|PMID:22057276)
(PMID:11278511), (PMID:15093541), (PMID:8845352)
RGD
MGI
CAFA
PMID:8845352 PMID:9894005 PMID:11278511 PMID:15093541 PMID:22057276 MGI:5300404 RGD:1545055 NCBI chrNW_004955402:9,295,862...9,304,952
Ensembl chrNW_004955402:9,296,321...9,306,631
JBrowse link
dUMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dut deoxyuridine triphosphatase ISO RGD PMID:1315924 PMID:3032103 RGD:2300191 RGD:2301218 NCBI chrNW_004955409:5,574,810...5,584,135
Ensembl chrNW_004955409:5,574,694...5,584,134
JBrowse link
UMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Uck1 uridine-cytidine kinase 1 acts_upstream_of_or_within ISO (MGI:84399|PMID:8951040) GOC PMID:8951040 MGI:84399 NCBI chrNW_004955513:1,203,934...1,208,720
Ensembl chrNW_004955513:1,203,934...1,208,724
JBrowse link
G Umps uridine monophosphate synthetase involved_in ISO (PMID:11730338), (PMID:18184586), (PMID:6893554), (PMID:9042911)
(PMID:11730338), (PMID:6893554)
RGD
UniProt
PMID:6134725 PMID:6893554 PMID:9042911 PMID:11730338 PMID:18184586 RGD:5132277 NCBI chrNW_004955427:23,825,529...23,841,427
Ensembl chrNW_004955427:23,825,523...23,841,152
JBrowse link
G Uprt uracil phosphoribosyltransferase homolog ISO RGD PMID:1476792 RGD:5132591 NCBI chrNW_004955562:1,385,617...1,415,277
Ensembl chrNW_004955562:1,385,611...1,415,336
JBrowse link
UMP salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cda cytidine deaminase involved_in ISO (MGI:6720232|PMID:6498945) MGI PMID:6498945 MGI:6720232 NCBI chrNW_004955452:1,131,968...1,156,777
Ensembl chrNW_004955452:1,132,049...1,156,565
JBrowse link
G Uck1 uridine-cytidine kinase 1 involved_in ISO (MGI:84399|PMID:8951040)
(PMID:11306702)
MGI
UniProt
PMID:8951040 PMID:11306702 MGI:84399 NCBI chrNW_004955513:1,203,934...1,208,720
Ensembl chrNW_004955513:1,203,934...1,208,724
JBrowse link
G Uck2 uridine-cytidine kinase 2 involved_in ISO (PMID:27239701)
(PMID:11306702), (PMID:27239701)
MGI PMID:11306702 PMID:27239701 NCBI chrNW_004955462:10,815,496...10,925,364
Ensembl chrNW_004955462:10,815,389...10,886,227
JBrowse link
G Upp1 uridine phosphorylase 1 involved_in ISO (MGI:3586453|PMID:11956089) MGI PMID:11956089 MGI:3586453 NCBI chrNW_004955456:5,365,912...5,385,336
Ensembl chrNW_004955456:5,365,877...5,385,336
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12195
    metabolic process 7780
      organic substance metabolic process 7488
        organophosphate metabolic process 694
          nucleoside phosphate metabolic process 363
            nucleoside monophosphate metabolic process 59
              nucleoside monophosphate biosynthetic process 35
                pyrimidine nucleoside monophosphate biosynthetic process 11
                  pyrimidine deoxyribonucleoside monophosphate biosynthetic process + 3
                  pyrimidine ribonucleoside monophosphate biosynthetic process + 8
Path 2
Term Annotations click to browse term
  biological_process 12195
    metabolic process 7780
      cellular metabolic process 6663
        cellular aromatic compound metabolic process 3968
          nucleobase-containing compound metabolic process 3789
            nucleobase-containing small molecule metabolic process 402
              nucleoside phosphate metabolic process 363
                nucleoside monophosphate metabolic process 59
                  nucleoside monophosphate biosynthetic process 35
                    pyrimidine nucleoside monophosphate biosynthetic process 11
                      pyrimidine deoxyribonucleoside monophosphate biosynthetic process + 3
                      pyrimidine ribonucleoside monophosphate biosynthetic process + 8
paths to the root