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ONTOLOGY REPORT - ANNOTATIONS


Term:nucleoside monophosphate biosynthetic process
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Accession:GO:0009124 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of a nucleoside monophosphate, a compound consisting of a nucleobase linked to a deoxyribose or ribose sugar esterified with phosphate on the sugar.
Synonyms:exact_synonym: nucleoside monophosphate anabolism;   nucleoside monophosphate biosynthesis;   nucleoside monophosphate formation;   nucleoside monophosphate synthesis


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nucleoside monophosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd8 ectonucleoside triphosphate diphosphohydrolase 8 involved_in IEA
ISO
GO_REF:0000107
(MGI:3043620|PMID:15122917)
Ensembl
RGD
PMID:15122917 GO_REF:0000107 MGI:3043620 NCBI chr 3:2,286,363...2,299,720
Ensembl chr 3:2,288,667...2,302,782
JBrowse link
'de novo' AMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adsl adenylosuccinate lyase involved_in IEA
IBA
GO_REF:0000041
PMID:21873635
UniProt PMID:21873635, PMID:21873635 GO_REF:0000041, RGD:13792537, RGD:13792537 NCBI chr 7:122,157,201...122,192,328
Ensembl chr 7:122,157,201...122,192,328
JBrowse link
G Adss adenylosuccinate synthase involved_in IEA
IBA
GO_REF:0000041
PMID:21873635
UniProt PMID:21873635, PMID:21873635 GO_REF:0000041, RGD:13792537, RGD:13792537 NCBI chr13:95,913,426...95,943,761
Ensembl chr13:95,913,426...95,943,761
JBrowse link
G Adssl1 adenylosuccinate synthase like 1 involved_in IEA
IBA
GO_REF:0000041
PMID:21873635
UniProt PMID:21873635, PMID:21873635 GO_REF:0000041, RGD:13792537, RGD:13792537 NCBI chr 6:137,184,818...137,206,694
Ensembl chr 6:137,184,820...137,206,693
JBrowse link
'de novo' IMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07036855.1 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 Ensembl chr  X:4,285,857...4,287,160 JBrowse link
G Adsl adenylosuccinate lyase involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 7:122,157,201...122,192,328
Ensembl chr 7:122,157,201...122,192,328
JBrowse link
G Atic 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase involved_in IDA
IEA
IBA
GO_REF:0000041
PMID:21873635
UniProt PMID:9332377, PMID:21873635, PMID:21873635 GO_REF:0000041, RGD:70804, RGD:13792537, RGD:13792537 NCBI chr 9:78,862,013...78,882,061
Ensembl chr 9:78,862,013...78,882,060
JBrowse link
G Gart phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr11:31,780,477...31,805,728
Ensembl chr11:31,780,487...31,805,728
JBrowse link
G LOC100910308 multifunctional protein ADE2-like involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr14:33,968,258...33,977,367
Ensembl chr14:33,968,759...33,977,277
JBrowse link
G Paics phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr14:33,563,884...33,580,944
Ensembl chr14:33,563,886...33,580,566
JBrowse link
G Pfas phosphoribosylformylglycinamidine synthase involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr10:55,571,881...55,593,384
Ensembl chr10:55,571,118...55,589,978
JBrowse link
G Ppat phosphoribosyl pyrophosphate amidotransferase involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr14:33,580,541...33,614,919
Ensembl chr14:33,580,541...33,614,919
JBrowse link
'de novo' UMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cad carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 6:26,657,507...26,680,459
Ensembl chr 6:26,657,780...26,680,284
JBrowse link
G Dhodh dihydroorotate dehydrogenase (quinone) involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr19:42,066,103...42,087,906
Ensembl chr19:42,066,351...42,082,012
JBrowse link
G Umps uridine monophosphate synthetase involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr11:70,034,181...70,044,590
Ensembl chr11:70,034,139...70,044,628
JBrowse link
AMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07034673.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr11:83,483,172...83,483,513 JBrowse link
G Adsl adenylosuccinate lyase involved_in IDA
ISO
(PMID:11428554) RGD PMID:11428554, PMID:3759987 RGD:5135303 NCBI chr 7:122,157,201...122,192,328
Ensembl chr 7:122,157,201...122,192,328
JBrowse link
G Adss adenylosuccinate synthase involved_in ISO (PMID:2004783)
(MGI:64874|PMID:8308018)
RGD PMID:2004783 PMID:8308018 MGI:64874 NCBI chr13:95,913,426...95,943,761
Ensembl chr13:95,913,426...95,943,761
JBrowse link
G Adssl1 adenylosuccinate synthase like 1 involved_in ISO (PMID:15786719) RGD PMID:15786719 NCBI chr 6:137,184,818...137,206,694
Ensembl chr 6:137,184,820...137,206,693
JBrowse link
G LOC100910067 bis(5'-nucleosyl)-tetraphosphatase [asymmetrical]-like involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537
G Nudt2 nudix hydrolase 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 5:57,845,819...57,860,658
Ensembl chr 5:57,845,819...57,860,658
JBrowse link
G Prps1 phosphoribosyl pyrophosphate synthetase 1 IDA RGD PMID:2546925 RGD:5134985 NCBI chr  X:111,798,233...111,820,270
Ensembl chr  X:111,798,233...111,820,266
JBrowse link
G Prps2 phosphoribosyl pyrophosphate synthetase 2 IDA RGD PMID:2546925 RGD:5134985 NCBI chr  X:28,435,275...28,472,882
Ensembl chr  X:28,435,507...28,472,880
JBrowse link
AMP salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adk adenosine kinase involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr15:3,033,535...3,435,888
Ensembl chr15:3,033,495...3,435,888
JBrowse link
G Aprt adenine phosphoribosyl transferase involved_in IEA
IBA
GO_REF:0000041
PMID:21873635
UniProt PMID:21873635, PMID:21873635 GO_REF:0000041, RGD:13792537, RGD:13792537 NCBI chr19:55,387,288...55,389,256
Ensembl chr19:55,387,288...55,389,256
JBrowse link
dAMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dck deoxycytidine kinase involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr14:20,935,442...20,952,939
Ensembl chr14:20,935,369...20,953,095
JBrowse link
deoxyribonucleoside monophosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dck deoxycytidine kinase involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr14:20,935,442...20,952,939
Ensembl chr14:20,935,369...20,953,095
JBrowse link
G Dguok deoxyguanosine kinase involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 4:115,180,433...115,208,061
Ensembl chr 4:115,180,433...115,208,061
JBrowse link
G Tk1 thymidine kinase 1 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:106,817,556...106,828,888
Ensembl chr10:106,817,601...106,828,884
JBrowse link
G Tk2 thymidine kinase 2 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr19:917,203...939,236
Ensembl chr19:917,203...939,221
JBrowse link
dTMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctd dCMP deaminase involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr16:47,177,144...47,222,850
Ensembl chr16:47,177,145...47,208,110
JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 ISO (MGI:3849912|PMID:19513116) RGD PMID:19513116 MGI:3849912 NCBI chr10:47,030,813...47,059,216
Ensembl chr10:47,031,050...47,059,216
JBrowse link
G Tyms thymidylate synthetase involved_in IDA
IBA
ISO
PMID:21873635
(PMID:11278511), (PMID:15093541), (PMID:8845352)
RGD PMID:8845352 PMID:11278511 PMID:15093541, PMID:9894005, PMID:21873635, PMID:21873635 RGD:1545055, RGD:13792537, RGD:13792537 NCBI chr 9:121,918,875...121,931,564
Ensembl chr 9:121,918,947...121,931,564
JBrowse link
dUMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07001512.1 involved_in IEA
IBA
GO_REF:0000041
PMID:21873635
UniProt PMID:21873635, PMID:21873635 GO_REF:0000041, RGD:13792537, RGD:13792537 Ensembl chr 1:48,565,160...48,565,711 JBrowse link
G Dctd dCMP deaminase involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr16:47,177,144...47,222,850
Ensembl chr16:47,177,145...47,208,110
JBrowse link
G Dut deoxyuridine triphosphatase involved_in IDA
IEA
IBA
GO_REF:0000041
PMID:21873635
UniProt PMID:3032103, PMID:21873635, PMID:21873635, PMID:1315924 GO_REF:0000041, RGD:2300191, RGD:13792537, RGD:13792537, RGD:2301218 NCBI chr 3:117,514,399...117,525,450
Ensembl chr 3:117,514,444...117,525,446
JBrowse link
FMN biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rfk riboflavin kinase involved_in IBA
IEA
PMID:21873635
GO_REF:0000041
UniProt PMID:21873635, PMID:21873635 GO_REF:0000041, RGD:13792537, RGD:13792537 NCBI chr 1:236,494,221...236,501,733
Ensembl chr 1:236,494,221...236,501,733
JBrowse link
GMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gmps guanine monophosphate synthase involved_in IDA
IEA
IBA
ISO
GO_REF:0000002
PMID:21873635
(PMID:8089153)
GO_REF:0000041
GO_REF:0000104
InterPro
RGD
UniProt
PMID:8089153, PMID:3436958, PMID:21873635, PMID:21873635 GO_REF:0000002 GO_REF:0000041 GO_REF:0000104, RGD:1599004, RGD:13792537, RGD:13792537 NCBI chr 2:154,555,967...154,590,662
Ensembl chr 2:154,555,871...154,590,662
JBrowse link
G Impdh1 inosine monophosphate dehydrogenase 1 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 4:56,478,383...56,493,987
Ensembl chr 4:56,478,384...56,493,923
JBrowse link
G Impdh2 inosine monophosphate dehydrogenase 2 involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 8:117,346,983...117,351,619
Ensembl chr 8:117,347,029...117,351,610
JBrowse link
GMP salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hprt1 hypoxanthine phosphoribosyltransferase 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:158,196,640...158,228,815
Ensembl chr  X:158,197,149...158,228,749
JBrowse link
G LOC103689983 hypoxanthine-guanine phosphoribosyltransferase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:158,623,231...158,655,277
Ensembl chr  X:158,623,240...158,655,198
JBrowse link
IMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ampd1 adenosine monophosphate deaminase 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635, PMID:21873635 RGD:13792537, RGD:13792537 NCBI chr 2:205,568,934...205,589,961
Ensembl chr 2:205,568,935...205,590,021
JBrowse link
G Ampd2 adenosine monophosphate deaminase 2 involved_in ISO
IBA
SGD:S000004498 (PMID:23911318)
PMID:21873635
MGI:5490144 (MGI:5506958|PMID:23911318)
RGD PMID:23911318, PMID:21873635, PMID:21873635 MGI:5506958, RGD:13792537, RGD:13792537 NCBI chr 2:210,861,624...210,874,348
Ensembl chr 2:210,861,625...210,874,304
JBrowse link
G Ampd3 adenosine monophosphate deaminase 3 involved_in ISO
IBA
MGI:5529271 (MGI:5506958|PMID:23911318), (MGI:5512796|PMID:23542464), (MGI:5529149|PMID:23078545), (MGI:87193|PMID:9133604)
PMID:21873635
RGD PMID:9133604 PMID:23078545 PMID:23542464 PMID:23911318, PMID:21873635, PMID:21873635 MGI:5506958 MGI:5512796 MGI:5529149 MGI:87193, RGD:13792537, RGD:13792537 NCBI chr 1:175,585,301...175,630,479
Ensembl chr 1:175,586,097...175,630,467
JBrowse link
IMP salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ampd1 adenosine monophosphate deaminase 1 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 2:205,568,934...205,589,961
Ensembl chr 2:205,568,935...205,590,021
JBrowse link
G Ampd2 adenosine monophosphate deaminase 2 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 2:210,861,624...210,874,348
Ensembl chr 2:210,861,625...210,874,304
JBrowse link
G Ampd3 adenosine monophosphate deaminase 3 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 1:175,585,301...175,630,479
Ensembl chr 1:175,586,097...175,630,467
JBrowse link
G Hprt1 hypoxanthine phosphoribosyltransferase 1 involved_in IEA
IBA
GO_REF:0000041
PMID:21873635
UniProt PMID:21873635 GO_REF:0000041, RGD:13792537 NCBI chr  X:158,196,640...158,228,815
Ensembl chr  X:158,197,149...158,228,749
JBrowse link
G LOC103689983 hypoxanthine-guanine phosphoribosyltransferase involved_in IEA
IBA
GO_REF:0000041
PMID:21873635
UniProt PMID:21873635 GO_REF:0000041, RGD:13792537 NCBI chr  X:158,623,231...158,655,277
Ensembl chr  X:158,623,240...158,655,198
JBrowse link
G Prtfdc1 phosphoribosyl transferase domain containing 1 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr17:87,926,242...88,037,040
Ensembl chr17:87,927,058...88,037,040
JBrowse link
purine ribonucleoside monophosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:160,115,840...160,139,947
Ensembl chr 3:160,115,842...160,139,947
JBrowse link
G Adssl1 adenylosuccinate synthase like 1 IDA RGD PMID:3759987 RGD:5135303 NCBI chr 6:137,184,818...137,206,694
Ensembl chr 6:137,184,820...137,206,693
JBrowse link
G Ppat phosphoribosyl pyrophosphate amidotransferase IDA RGD PMID:8463258 RGD:633710 NCBI chr14:33,580,541...33,614,919
Ensembl chr14:33,580,541...33,614,919
JBrowse link
ribonucleoside monophosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adsl adenylosuccinate lyase IDA AICAR RGD PMID:3759987 RGD:5135303 NCBI chr 7:122,157,201...122,192,328
Ensembl chr 7:122,157,201...122,192,328
JBrowse link
G Gart phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase IDA RGD PMID:4027981 RGD:5135261 NCBI chr11:31,780,477...31,805,728
Ensembl chr11:31,780,487...31,805,728
JBrowse link
G LOC100910245 ribose-phosphate pyrophosphokinase 2-like involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:29,157,349...29,176,858
Ensembl chr  X:29,157,470...29,176,539
JBrowse link
G LOC314140 ribose-phosphate pyrophosphokinase I -like involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:78,172,762...78,181,608
Ensembl chr 6:78,172,762...78,180,924
JBrowse link
G Pfas phosphoribosylformylglycinamidine synthase IDA RGD PMID:6722784 RGD:5135276 NCBI chr10:55,571,881...55,593,384
Ensembl chr10:55,571,118...55,589,978
JBrowse link
G Prps1l1 phosphoribosyl pyrophosphate synthetase 1-like 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 6:54,417,903...54,419,593
Ensembl chr 6:54,417,903...54,419,593
JBrowse link
UMP biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Umps uridine monophosphate synthetase involved_in IDA
ISO
IBA
(PMID:11730338), (PMID:6893554)
PMID:21873635
RGD PMID:6893554 PMID:11730338, PMID:6134725, PMID:21873635, PMID:21873635 RGD:5132277, RGD:13792537, RGD:13792537 NCBI chr11:70,034,181...70,044,590
Ensembl chr11:70,034,139...70,044,628
JBrowse link
G Uprt uracil phosphoribosyltransferase homolog IDA RGD PMID:1476792 RGD:5132591 NCBI chr  X:75,382,553...75,408,541
Ensembl chr  X:75,382,598...75,407,217
JBrowse link
UMP salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Uck1 uridine-cytidine kinase 1 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 3:11,271,874...11,277,757
Ensembl chr 3:11,271,885...11,277,757
JBrowse link
G Uck2 uridine-cytidine kinase 2 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr13:85,376,716...85,443,976
Ensembl chr13:85,376,716...85,443,976
JBrowse link
G Uckl1 uridine-cytidine kinase 1-like 1 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 3:177,066,022...177,078,611
Ensembl chr 3:177,066,014...177,078,594
JBrowse link
G Upp1 uridine phosphorylase 1 IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr14:89,314,234...89,334,060
Ensembl chr14:89,314,176...89,334,276
JBrowse link
G Upp2 uridine phosphorylase 2 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 3:44,806,106...44,846,464
Ensembl chr 3:44,806,106...44,846,464
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20078
    metabolic process 12140
      small molecule metabolic process 1820
        nucleobase-containing small molecule metabolic process 598
          nucleoside phosphate metabolic process 526
            nucleoside monophosphate metabolic process 86
              nucleoside monophosphate biosynthetic process 50
                deoxyribonucleoside monophosphate biosynthetic process + 9
                purine nucleoside monophosphate biosynthetic process + 28
                pyrimidine nucleoside monophosphate biosynthetic process + 14
                ribonucleoside monophosphate biosynthetic process + 40
Path 2
Term Annotations click to browse term
  biological_process 20078
    metabolic process 12140
      cellular metabolic process 11076
        cellular nitrogen compound metabolic process 6738
          nucleobase-containing compound metabolic process 5512
            nucleobase-containing small molecule metabolic process 598
              nucleoside phosphate metabolic process 526
                nucleoside phosphate biosynthetic process 252
                  nucleoside monophosphate biosynthetic process 50
                    deoxyribonucleoside monophosphate biosynthetic process + 9
                    purine nucleoside monophosphate biosynthetic process + 28
                    pyrimidine nucleoside monophosphate biosynthetic process + 14
                    ribonucleoside monophosphate biosynthetic process + 40
paths to the root