ONTOLOGY REPORT - ANNOTATIONS
Term: nucleobase metabolic process
Accession: GO:0009112
browse the term
Definition: The chemical reactions and pathways involving a nucleobase, a nitrogenous base that is a constituent of a nucleic acid, e.g. the purines: adenine, guanine, hypoxanthine, xanthine and the pyrimidines: cytosine, uracil, thymine.
Synonyms: exact_synonym: nucleobase metabolism
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Cad
carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase
involved_in acts_upstream_of_or_within
ISO IBA ISS
RGD GO_Central UniProt MGI
PMID:1476792
GO_REF:0000008 GO_REF:0000024 GO_REF:0000033 GO_REF:0000096 GO_REF:0000119 RGD:5132591
NCBI chr 5:31,211,964...31,235,823
Ensembl chr 5:31,212,124...31,235,823
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Cmpk1
cytidine/uridine monophosphate kinase 1
involved_in
IEA
InterPro
GO_REF:0000002
NCBI chr 4:114,817,810...114,844,425
Ensembl chr 4:114,816,533...114,844,438
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Cps1
carbamoyl-phosphate synthetase 1
involved_in
IEA
InterPro
GO_REF:0000002
NCBI chr 1:67,151,294...67,270,426
Ensembl chr 1:67,162,185...67,270,418
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Dhodh
dihydroorotate dehydrogenase
involved_in
ISO IBA IEA
RGD GO_Central InterPro
PMID:1476792
GO_REF:0000002 GO_REF:0000033 GO_REF:0000096 RGD:5132591
NCBI chr 8:110,319,876...110,335,330
Ensembl chr 8:110,317,975...110,335,305
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Mtor
mechanistic target of rapamycin kinase
involved_in
IDA
(PMID:23429704)
CACAO
PMID:23429704
NCBI chr 4:148,533,039...148,642,142
Ensembl chr 4:148,533,068...148,642,140
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Umps
uridine monophosphate synthetase
involved_in
IEA
InterPro
GO_REF:0000002
NCBI chr16:33,775,152...33,787,408
Ensembl chr16:33,775,152...33,787,408
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Gart
phosphoribosylglycinamide formyltransferase
involved_in
IBA
GO_Central
GO_REF:0000033
NCBI chr16:91,418,283...91,444,505
Ensembl chr16:91,418,074...91,443,840
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Aprt
adenine phosphoribosyl transferase
acts_upstream_of_or_within
IGI IMP IC
(PMID:8894695) (PMID:8643571), (PMID:8894695) (PMID:1235912)
MGI
PMID:1235912 PMID:8643571 PMID:8894695
NCBI chr 8:123,301,376...123,303,646
Ensembl chr 8:123,301,374...123,303,648
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Hprt1
hypoxanthine phosphoribosyltransferase 1
acts_upstream_of_or_within
IGI
(PMID:8894695)
MGI
PMID:8894695
NCBI chr X:52,076,955...52,110,537
Ensembl chr X:52,077,014...52,110,536
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Aprt
adenine phosphoribosyl transferase
involved_in
IBA IEA
GO_Central InterPro
GO_REF:0000002 GO_REF:0000033
NCBI chr 8:123,301,376...123,303,646
Ensembl chr 8:123,301,374...123,303,648
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Mapk1
mitogen-activated protein kinase 1
acts_upstream_of_or_within
IDA
(PMID:15284227)
MGI
PMID:15284227
NCBI chr16:16,801,246...16,865,317
Ensembl chr16:16,801,246...16,865,317
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Tet2
tet methylcytosine dioxygenase 2
acts_upstream_of_or_within
IMP
(PMID:21803851)
MGI
PMID:21803851
NCBI chr 3:133,169,438...133,250,882
Ensembl chr 3:133,169,440...133,250,900
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Nt5c2
5'-nucleotidase, cytosolic II
involved_in
IDA
(PMID:5560407)
MGI
PMID:5560407
NCBI chr19:46,873,829...47,003,613
Ensembl chr19:46,871,756...47,003,592
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Pnp
purine-nucleoside phosphorylase
involved_in
IMP
(PMID:11783524)
MGI
PMID:11783524
NCBI chr14:51,181,760...51,190,869
Ensembl chr14:51,168,539...51,190,869
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Gda
guanine deaminase
involved_in
IDA IEA
(PMID:8064675)
MGI UniProt
PMID:8064675
GO_REF:0000041
NCBI chr19:21,368,671...21,450,025
Ensembl chr19:21,368,671...21,450,809
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Uox
urate oxidase
involved_in
IDA
(PMID:16462750)
MGI
PMID:16462750
NCBI chr 3:146,302,904...146,337,238
Ensembl chr 3:146,276,181...146,338,060
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Urad
ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5) decarboxylase
involved_in
IDA
(PMID:16462750)
MGI
PMID:16462750
NCBI chr 5:147,251,794...147,259,250
Ensembl chr 5:147,251,794...147,259,250
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Urah
urate (5-hydroxyiso-) hydrolase
involved_in
IDA
(PMID:16462750)
MGI
PMID:16462750
NCBI chr 7:140,414,936...140,417,884
Ensembl chr 7:140,414,931...140,417,879
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Xdh
xanthine dehydrogenase
involved_in
IDA ISO
(PMID:1590774) (PMID:3443108)
MGI
PMID:1590774 PMID:3443108
NCBI chr17:74,190,890...74,257,191
Ensembl chr17:74,190,890...74,257,191
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Gda
guanine deaminase
involved_in
IBA
GO_Central
GO_REF:0000033
NCBI chr19:21,368,671...21,450,025
Ensembl chr19:21,368,671...21,450,809
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Kdm1a
lysine (K)-specific demethylase 1A
involved_in
ISO IEA
RGD Ensembl GO_Central
PMID:20418916
GO_REF:0000096 GO_REF:0000107 RGD:9588315
NCBI chr 4:136,277,844...136,330,127
Ensembl chr 4:136,277,851...136,330,034
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Gm13377
predicted gene 13377
NOT|involved_in
ISO
(PMID:21054786)
UniProt
PMID:21054786
NCBI chr 2:21,049,620...21,144,493
Ensembl chr 2:21,049,619...21,146,765
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Hprt1
hypoxanthine phosphoribosyltransferase 1
involved_in
IBA ISO IEA
GO_Central Ensembl
GO_REF:0000033 GO_REF:0000107 GO_REF:0000119
NCBI chr X:52,076,955...52,110,537
Ensembl chr X:52,077,014...52,110,536
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Ada
adenosine deaminase
acts_upstream_of_or_within
IMP
(PMID:10720488)
MGI
PMID:10720488
NCBI chr 2:163,565,703...163,592,154
Ensembl chr 2:163,568,504...163,592,159
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Prps1
phosphoribosyl pyrophosphate synthetase 1
involved_in
ISO
GO_Central
GO_REF:0000119
NCBI chr X:139,357,352...139,376,889
Ensembl chr X:139,357,362...139,376,889
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Uox
urate oxidase
involved_in
IDA
(PMID:16462750)
MGI
PMID:16462750
NCBI chr 3:146,302,904...146,337,238
Ensembl chr 3:146,276,181...146,338,060
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Urad
ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5) decarboxylase
involved_in
IDA
(PMID:16462750)
MGI
PMID:16462750
NCBI chr 5:147,251,794...147,259,250
Ensembl chr 5:147,251,794...147,259,250
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Urah
urate (5-hydroxyiso-) hydrolase
involved_in
IDA
(PMID:16462750)
MGI
PMID:16462750
NCBI chr 7:140,414,936...140,417,884
Ensembl chr 7:140,414,931...140,417,879
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Xdh
xanthine dehydrogenase
involved_in
ISO IMP IDA
(PMID:30936145) (PMID:3443108) (PMID:1590774)
RGD GO_Central MGI
PMID:232638 PMID:1590774 PMID:3443108 PMID:30936145
GO_REF:0000096 RGD:13210503
NCBI chr17:74,190,890...74,257,191
Ensembl chr17:74,190,890...74,257,191
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Hprt1
hypoxanthine phosphoribosyltransferase 1
involved_in acts_upstream_of_or_within
ISO IBA IMP IC
(PMID:10037486) (PMID:3029599) (PMID:1235912)
RGD GO_Central MGI
PMID:1235912 PMID:3029599 PMID:6206848 PMID:10037486
GO_REF:0000033 GO_REF:0000096 GO_REF:0000119 RGD:1580844
NCBI chr X:52,076,955...52,110,537
Ensembl chr X:52,077,014...52,110,536
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Ada
adenosine deaminase
involved_in
IBA
GO_Central
GO_REF:0000033
NCBI chr 2:163,565,703...163,592,154
Ensembl chr 2:163,568,504...163,592,159
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Hprt1
hypoxanthine phosphoribosyltransferase 1
involved_in
ISS ISO
UniProt GO_Central
GO_REF:0000024 GO_REF:0000119
NCBI chr X:52,076,955...52,110,537
Ensembl chr X:52,077,014...52,110,536
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Gart
phosphoribosylglycinamide formyltransferase
involved_in
IEA
InterPro
GO_REF:0000002
NCBI chr16:91,418,283...91,444,505
Ensembl chr16:91,418,074...91,443,840
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Paics
phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase
involved_in
ISO ISS
GO_Central UniProt
GO_REF:0000024 GO_REF:0000119
NCBI chr 5:77,099,149...77,115,356
Ensembl chr 5:77,099,154...77,115,356
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Ppat
phosphoribosyl pyrophosphate amidotransferase
involved_in
IEA
InterPro
GO_REF:0000002
NCBI chr 5:77,061,096...77,099,425
Ensembl chr 5:77,061,096...77,099,425
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Shmt1
serine hydroxymethyltransferase 1 (soluble)
involved_in
IEA ISO
Ensembl GO_Central
GO_REF:0000107 GO_REF:0000119
NCBI chr11:60,679,723...60,702,062
Ensembl chr11:60,678,930...60,702,544
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Dpyd
dihydropyrimidine dehydrogenase
involved_in
IEA ISO
Ensembl GO_Central
GO_REF:0000107 GO_REF:0000119
NCBI chr 3:118,355,758...119,226,573
Ensembl chr 3:118,355,778...119,226,573
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Uox
urate oxidase
involved_in
IBA
GO_Central
GO_REF:0000033
NCBI chr 3:146,302,904...146,337,238
Ensembl chr 3:146,276,181...146,338,060
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Acp3
acid phosphatase 3
involved_in
IMP
(PMID:18940592)
UniProt
PMID:18940592
NCBI chr 9:104,165,439...104,214,921
Ensembl chr 9:104,165,450...104,214,947
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Adk
adenosine kinase
involved_in
IBA
GO_Central
GO_REF:0000033
NCBI chr14:21,102,622...21,498,637
Ensembl chr14:21,102,642...21,498,637
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Gmpr
guanosine monophosphate reductase
involved_in
IEA
UniProt
GO_REF:0000043
NCBI chr13:45,660,905...45,699,862
Ensembl chr13:45,660,920...45,707,276
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Gmpr2
guanosine monophosphate reductase 2
involved_in
IEA
UniProt
GO_REF:0000043
NCBI chr14:55,909,692...55,935,602
Ensembl chr14:55,909,398...55,916,657
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Prps1
phosphoribosyl pyrophosphate synthetase 1
involved_in
ISO
GO_Central
GO_REF:0000119
NCBI chr X:139,357,352...139,376,889
Ensembl chr X:139,357,362...139,376,889
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Ttr
transthyretin
involved_in
IBA
GO_Central
GO_REF:0000033
NCBI chr18:20,797,266...20,807,383
Ensembl chr18:20,798,337...20,807,378
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Uox
urate oxidase
acts_upstream_of_or_within
TAS
(PMID:11461119)
MGI
PMID:11461119
NCBI chr 3:146,302,904...146,337,238
Ensembl chr 3:146,276,181...146,338,060
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Urah
urate (5-hydroxyiso-) hydrolase
involved_in
IBA
GO_Central
GO_REF:0000033
NCBI chr 7:140,414,936...140,417,884
Ensembl chr 7:140,414,931...140,417,879
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Ctps1
cytidine 5'-triphosphate synthase 1
involved_in
IBA
GO_Central
GO_REF:0000033
NCBI chr 4:120,397,065...120,427,473
Ensembl chr 4:120,397,065...120,427,473
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Ctps2
cytidine 5'-triphosphate synthase 2
involved_in
IBA
GO_Central
GO_REF:0000033
NCBI chr X:161,684,264...161,817,537
Ensembl chr X:161,684,234...161,815,504
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Umps
uridine monophosphate synthetase
involved_in
IBA
GO_Central
GO_REF:0000033
NCBI chr16:33,775,152...33,787,408
Ensembl chr16:33,775,152...33,787,408
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Crmp1
collapsin response mediator protein 1
NOT|involved_in
IBA
GO_Central
GO_REF:0000033
NCBI chr 5:37,399,402...37,449,507
Ensembl chr 5:37,399,284...37,449,477
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Dpyd
dihydropyrimidine dehydrogenase
involved_in acts_upstream_of_or_within
ISO IDA
(PMID:12651209)
RGD GO_Central MGI
PMID:1629785 PMID:12651209
GO_REF:0000096 GO_REF:0000119 RGD:1599794
NCBI chr 3:118,355,758...119,226,573
Ensembl chr 3:118,355,778...119,226,573
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Dpys
dihydropyrimidinase
involved_in
ISO IBA
GO_Central
GO_REF:0000033 GO_REF:0000119
NCBI chr15:39,631,881...39,720,866
Ensembl chr15:39,631,883...39,720,866
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Dpysl2
dihydropyrimidinase-like 2
NOT|involved_in
IBA
GO_Central
GO_REF:0000033
NCBI chr14:67,040,313...67,148,490
Ensembl chr14:67,040,313...67,148,410
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Dpysl3
dihydropyrimidinase-like 3
NOT|involved_in
IBA
GO_Central
GO_REF:0000033
NCBI chr18:43,454,044...43,571,354
Ensembl chr18:43,454,049...43,571,351
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Dpysl4
dihydropyrimidinase-like 4
NOT|involved_in
IBA
GO_Central
GO_REF:0000033
NCBI chr 7:138,665,917...138,681,711
Ensembl chr 7:138,665,917...138,682,620
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Dpysl5
dihydropyrimidinase-like 5
NOT|involved_in
IBA
GO_Central
GO_REF:0000033
NCBI chr 5:30,868,908...30,956,713
Ensembl chr 5:30,868,908...30,956,719
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Rrm1
ribonucleotide reductase M1
involved_in
ISO IEA
orotic acid
RGD Ensembl
PMID:10204803
GO_REF:0000107 RGD:5133695
NCBI chr 7:102,090,902...102,118,978
Ensembl chr 7:102,090,902...102,118,978
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Rrm2
ribonucleotide reductase M2
ISO
orotic acid
RGD
PMID:10204803
RGD:5133695
NCBI chr12:24,758,253...24,764,145
Ensembl chr12:24,758,240...24,764,145
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Tymp
thymidine phosphorylase
involved_in
IEA
InterPro
GO_REF:0000002
NCBI chr15:89,255,834...89,261,282
Ensembl chr15:89,256,134...89,261,242
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Tyms
thymidylate synthase
ISO
5-fluorocytosine
RGD
PMID:9524100
RGD:5133447
NCBI chr 5:30,243,544...30,279,261
Ensembl chr 5:30,263,200...30,278,615
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Aldh6a1
aldehyde dehydrogenase family 6, subfamily A1
involved_in
ISO IEA IBA
RGD Ensembl GO_Central
PMID:2768248
GO_REF:0000033 GO_REF:0000096 GO_REF:0000107 GO_REF:0000119 RGD:1599052
NCBI chr12:84,477,491...84,497,798
Ensembl chr12:84,477,491...84,497,778
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Dpyd
dihydropyrimidine dehydrogenase
involved_in
IBA IEA ISO
GO_Central Ensembl
GO_REF:0000033 GO_REF:0000107 GO_REF:0000119
NCBI chr 3:118,355,758...119,226,573
Ensembl chr 3:118,355,778...119,226,573
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Dpys
dihydropyrimidinase
involved_in
ISO ISS
(PMID:8307005)
GO_Central BHF-UCL
PMID:8307005
GO_REF:0000096
NCBI chr15:39,631,881...39,720,866
Ensembl chr15:39,631,883...39,720,866
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Aldh6a1
aldehyde dehydrogenase family 6, subfamily A1
involved_in
ISO
GO_Central
GO_REF:0000096
NCBI chr12:84,477,491...84,497,798
Ensembl chr12:84,477,491...84,497,778
G
Dpyd
dihydropyrimidine dehydrogenase
involved_in
ISO IBA ISS
GO_Central UniProt
GO_REF:0000024 GO_REF:0000033 GO_REF:0000119
NCBI chr 3:118,355,758...119,226,573
Ensembl chr 3:118,355,778...119,226,573
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Dpys
dihydropyrimidinase
involved_in
ISO ISS
(PMID:8307005)
GO_Central BHF-UCL
PMID:8307005
GO_REF:0000096 GO_REF:0000119
NCBI chr15:39,631,881...39,720,866
Ensembl chr15:39,631,883...39,720,866
G
Dpyd
dihydropyrimidine dehydrogenase
involved_in
ISO
RGD GO_Central
PMID:7626590
GO_REF:0000096 RGD:1624989
NCBI chr 3:118,355,758...119,226,573
Ensembl chr 3:118,355,778...119,226,573
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Dpys
dihydropyrimidinase
involved_in
ISO
RGD GO_Central
PMID:7626590 PMID:8307005
GO_REF:0000096 RGD:1624989 RGD:1624990
NCBI chr15:39,631,881...39,720,866
Ensembl chr15:39,631,883...39,720,866
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Tyms
thymidylate synthase
involved_in
ISO IEA
RGD Ensembl
PMID:2043679
GO_REF:0000107 RGD:5133426
NCBI chr 5:30,243,544...30,279,261
Ensembl chr 5:30,263,200...30,278,615
G
Ada
adenosine deaminase
acts_upstream_of_or_within
IMP
(PMID:10720488)
MGI
PMID:10720488
NCBI chr 2:163,565,703...163,592,154
Ensembl chr 2:163,568,504...163,592,159
G
Uox
urate oxidase
involved_in
IDA
(PMID:4207016)
MGI
PMID:4207016
NCBI chr 3:146,302,904...146,337,238
Ensembl chr 3:146,276,181...146,338,060
G
Urad
ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5) decarboxylase
involved_in
IDA
(PMID:16462750)
MGI
PMID:16462750
NCBI chr 5:147,251,794...147,259,250
Ensembl chr 5:147,251,794...147,259,250
G
Urah
urate (5-hydroxyiso-) hydrolase
involved_in
IDA
(PMID:16462750)
MGI
PMID:16462750
NCBI chr 7:140,414,936...140,417,884
Ensembl chr 7:140,414,931...140,417,879
G
Xdh
xanthine dehydrogenase
involved_in
ISO IBA ISS IDA
(PMID:3443108) (PMID:1590774)
MGI GO_Central UniProt
PMID:1590774 PMID:3443108
GO_REF:0000024 GO_REF:0000033 GO_REF:0000096 GO_REF:0000119
NCBI chr17:74,190,890...74,257,191
Ensembl chr17:74,190,890...74,257,191
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