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ONTOLOGY REPORT - ANNOTATIONS

Term:vitamin biosynthetic process
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Accession:GO:0009110 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of a vitamin, one of a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body.
Synonyms:exact_synonym: vitamin anabolism;   vitamin biosynthesis;   vitamin formation;   vitamin synthesis


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calcitriol biosynthetic process from calciol term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cyp27a1 cytochrome P450, family 27, subfamily a, polypeptide 1 involved_in ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 1:74,752,311...74,777,056
Ensembl chr 1:74,752,733...74,777,051 		JBrowse link
G Cyp27b1 cytochrome P450, family 27, subfamily b, polypeptide 1 involved_in IDA
IBA
ISO		 (MGI:3590419|PMID:15972816) UniProt
GO_Central
MGI		 PMID:15972816 GO_REF:0000033 GO_REF:0000119 MGI:3590419 MGI:4834177 NCBI chr10:126,884,115...126,891,897
Ensembl chr10:126,884,119...126,888,875 		JBrowse link
G Cyp2r1 cytochrome P450, family 2, subfamily r, polypeptide 1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 7:114,149,358...114,162,283
Ensembl chr 7:114,148,917...114,162,207 		JBrowse link
L-ascorbic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akr1a1 aldo-keto reductase family 1, member A1 involved_in
acts_upstream_of_or_within		 ISO
IMP
IDA		 (PMID:20410296)
(PMID:15769935)		 MGI PMID:15769935 PMID:20410296 GO_REF:0000096 MGI:4417868 NCBI chr 4:116,493,707...116,508,871
Ensembl chr 4:116,493,707...116,508,877 		JBrowse link
G Akr1b1 aldo-keto reductase family 1 member B involved_in IMP (PMID:20410296) MGI PMID:20410296 NCBI chr 6:34,280,865...34,294,424
Ensembl chr 6:34,279,369...34,294,413 		JBrowse link
G Gsto1 glutathione S-transferase omega 1 involved_in ISO RGD
MGI		 PMID:9786866 GO_REF:0000096 MGI:4417868 RGD:70644 NCBI chr19:47,843,412...47,853,229
Ensembl chr19:47,843,409...47,853,229 		JBrowse link
G Gulo gulonolactone (L-) oxidase involved_in
acts_upstream_of_or_within		 IDA
IMP		 (MGI:3029073|PMID:14962674)
(PMID:10639167)
(PMID:10606751)		 UniProt
MGI		 PMID:10606751 PMID:10639167 PMID:14962674 MGI:3029073 NCBI chr14:66,224,235...66,246,703
Ensembl chr14:66,224,235...66,246,656 		JBrowse link
G Rgn regucalcin involved_in IDA
IBA
IMP		 (MGI:5486063|PMID:23349732)
(PMID:16585534)		 UniProt
GO_Central
MGI		 PMID:16585534 PMID:23349732 GO_REF:0000033 MGI:5486063 NCBI chr  X:20,413,980...20,428,328
Ensembl chr  X:20,416,026...20,428,328 		JBrowse link
G Ugt1a6a UDP glucuronosyltransferase 1 family, polypeptide A6A involved_in IGI (PMID:10606751) MGI PMID:10606751 NCBI chr 1:88,062,531...88,147,724
Ensembl chr 1:88,062,531...88,146,719 		JBrowse link
negative regulation of vitamin D biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Snai1 snail family zinc finger 1 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 2:167,380,115...167,384,734
Ensembl chr 2:167,380,115...167,384,734 		JBrowse link
G Snai2 snail family zinc finger 2 involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr16:14,523,716...14,527,259
Ensembl chr16:14,523,716...14,527,249 		JBrowse link
positive regulation of vitamin D biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ifng interferon gamma involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr10:118,276,951...118,281,799
Ensembl chr10:118,276,951...118,281,797 		JBrowse link
G Tnf tumor necrosis factor involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr17:35,418,343...35,420,983
Ensembl chr17:35,418,357...35,420,983 		JBrowse link
pyridoxal 5'-phosphate salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdxk pyridoxal (pyridoxine, vitamin B6) kinase involved_in ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr10:78,272,581...78,300,782
Ensembl chr10:78,272,578...78,300,809 		JBrowse link
pyridoxal phosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdxk pyridoxal (pyridoxine, vitamin B6) kinase involved_in ISO RGD
MGI		 PMID:2988502 GO_REF:0000096 MGI:4417868 RGD:2303018 NCBI chr10:78,272,581...78,300,782
Ensembl chr10:78,272,578...78,300,809 		JBrowse link
G Pnpo pyridoxine 5'-phosphate oxidase involved_in
acts_upstream_of_or_within		 ISO
IBA
IDA		 (MGI:7489789|PMID:9601034) MGI
GO_Central
GOC		 PMID:9601034 GO_REF:0000033 GO_REF:0000119 MGI:4834177 MGI:7489789 NCBI chr11:96,828,642...96,834,845
Ensembl chr11:96,828,651...96,834,812 		JBrowse link
pyridoxine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pnpo pyridoxine 5'-phosphate oxidase involved_in
acts_upstream_of_or_within		 IEA UniProt GO_REF:0000002 GO_REF:0000043 MGI:1354194 MGI:2152098 NCBI chr11:96,828,642...96,834,845
Ensembl chr11:96,828,651...96,834,812 		JBrowse link
riboflavin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rfk riboflavin kinase involved_in IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr19:17,371,407...17,378,713
Ensembl chr19:17,371,407...17,378,713 		JBrowse link
thiamine diphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc19a2 solute carrier family 19 (thiamine transporter), member 2 involved_in IDA (PMID:8186267) MGI PMID:8186267 NCBI chr 1:164,076,615...164,092,954
Ensembl chr 1:164,076,615...164,092,954 		JBrowse link
G Slc19a3 solute carrier family 19, member 3 involved_in IMP
IDA		 (PMID:28665968)
(PMID:8186267)		 MGI PMID:8186267 PMID:28665968 NCBI chr 1:82,990,242...83,016,541
Ensembl chr 1:82,990,244...83,016,169 		JBrowse link
G Slc25a19 solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19 involved_in IDA
IMP		 (PMID:17035501), (PMID:8186267) MGI PMID:8186267 PMID:17035501 NCBI chr11:115,504,991...115,519,122
Ensembl chr11:115,505,004...115,519,121 		JBrowse link
G Thtpa thiamine triphosphatase involved_in IDA (PMID:18276586) MGI PMID:18276586 NCBI chr14:55,332,241...55,336,452
Ensembl chr14:55,332,241...55,336,443 		JBrowse link
G Tpk1 thiamine pyrophosphokinase involved_in ISO
IBA
IDA		 (PMID:10567383) MGI
GO_Central		 PMID:10567383 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 6:43,316,510...43,644,726
Ensembl chr 6:43,321,935...43,643,212 		JBrowse link
vitamin E biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pltp phospholipid transfer protein acts_upstream_of_or_within IMP (PMID:16467369) MGI PMID:16467369 NCBI chr 2:164,681,441...164,699,564
Ensembl chr 2:164,681,438...164,699,631 		JBrowse link
vitamin K biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ubiad1 UbiA prenyltransferase domain containing 1 involved_in ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 4:148,518,952...148,529,217
Ensembl chr 4:148,518,952...148,529,228 		JBrowse link
G Vkorc1 vitamin K epoxide reductase complex, subunit 1 acts_upstream_of_or_within ISO (PMID:12072400) MGI PMID:12072400 NCBI chr 7:127,492,235...127,494,833
Ensembl chr 7:127,485,399...127,494,626
Ensembl chr 7:127,485,399...127,494,626 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28573
    metabolic process 10995
      small molecule metabolic process 1868
        vitamin metabolic process 105
          vitamin biosynthetic process 24
            fat-soluble vitamin biosynthetic process + 10
            water-soluble vitamin biosynthetic process + 14
paths to the root