Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:vitamin biosynthetic process
go back to main search page
Accession:GO:0009110 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of a vitamin, one of a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body.
Synonyms:exact_synonym: vitamin anabolism;   vitamin biosynthesis;   vitamin formation;   vitamin synthesis


show annotations for term's descendants           Sort by:
calcitriol biosynthetic process from calciol term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CYP27A1 cytochrome P450 family 27 subfamily A member 1 involved_in IEA Ensembl
UniProt		 GO_REF:0000107 GO_REF:0000117 NCBI chr37:25,366,475...25,401,978
Ensembl chr37:25,366,472...25,401,509 		JBrowse link
G CYP27B1 cytochrome P450 family 27 subfamily B member 1 involved_in IEA Ensembl
UniProt		 GO_REF:0000107 GO_REF:0000117 NCBI chr10:1,825,224...1,830,845
Ensembl chr10:1,826,046...1,829,911 		JBrowse link
G CYP2R1 cytochrome P450 family 2 subfamily R member 1 involved_in ISO (PMID:15465040), (PMID:18511070) UniProt PMID:15465040 PMID:18511070 NCBI chr21:37,553,883...37,579,744
Ensembl chr21:37,552,732...37,606,725 		JBrowse link
L-ascorbic acid biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKR1A1 aldo-keto reductase family 1 member A1 involved_in
acts_upstream_of_or_within		 ISO PMID:22820017
(PMID:20410296)
(PMID:15769935)		 UniProt
MGI		 PMID:15769935 PMID:20410296 PMID:22820017 RGD:13825440 NCBI chr15:14,792,398...14,808,805
Ensembl chr15:14,742,012...14,808,592 		JBrowse link
G AKR1B1 aldo-keto reductase family 1 member B involved_in ISO (PMID:20410296) MGI PMID:20410296 NCBI chr14:2,991,888...3,006,941
Ensembl chr14:2,991,888...3,006,940 		JBrowse link
G GSTO1 glutathione S-transferase omega 1 ISO RGD PMID:9786866 RGD:70644 NCBI chr28:16,569,421...16,579,239
Ensembl chr28:16,569,066...16,619,880 		JBrowse link
G GULO gulonolactone (L-) oxidase involved_in IEA UniProt
Ensembl		 GO_REF:0000043 GO_REF:0000107 NCBI chr25:30,007,888...30,039,996 JBrowse link
G RGN regucalcin involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr  X:40,697,292...40,715,491
Ensembl chr  X:40,698,768...40,715,490 		JBrowse link
negative regulation of vitamin D biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SNAI1 snail family transcriptional repressor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:36,498,343...36,503,623
Ensembl chr24:36,498,062...36,503,628 		JBrowse link
G SNAI2 snail family transcriptional repressor 2 involved_in ISO (PMID:18485278), (PMID:19502595) BHF-UCL PMID:18485278 PMID:19502595 NCBI chr29:1,154,132...1,156,653
Ensembl chr29:1,154,036...1,156,653 		JBrowse link
phylloquinone biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G UBIAD1 UbiA prenyltransferase domain containing 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 2:84,803,338...84,813,030
Ensembl chr 2:84,804,935...84,813,344 		JBrowse link
positive regulation of vitamin D biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IFNG interferon gamma involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:10,406,866...10,411,698
Ensembl chr10:10,406,867...10,411,698 		JBrowse link
G TNF tumor necrosis factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:1,074,561...1,076,425
Ensembl chr12:1,074,552...1,076,425 		JBrowse link
pyridoxal 5'-phosphate salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PDXK pyridoxal kinase involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr31:37,686,002...37,710,059
Ensembl chr31:37,685,492...37,707,767 		JBrowse link
pyridoxal phosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PNPO pyridoxamine 5'-phosphate oxidase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:7489789|PMID:9601034) Ensembl
GOC
GOC		 PMID:9601034 GO_REF:0000107 GO_REF:0000108 MGI:7489789 NCBI chr 9:24,252,895...24,258,523
Ensembl chr 9:24,252,964...24,258,106 		JBrowse link
pyridoxine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PNPO pyridoxamine 5'-phosphate oxidase involved_in IEA InterPro GO_REF:0000002 NCBI chr 9:24,252,895...24,258,523
Ensembl chr 9:24,252,964...24,258,106 		JBrowse link
riboflavin biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RFK riboflavin kinase involved_in IEA InterPro GO_REF:0000002 NCBI chr 1:82,062,290...82,071,033
Ensembl chr 1:82,059,631...82,069,257 		JBrowse link
thiamine diphosphate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC486151 thiamine transporter 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:40,411,489...40,442,183
Ensembl chr25:40,412,427...40,438,042 		JBrowse link
G SLC19A2 solute carrier family 19 member 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:29,094,341...29,114,319
Ensembl chr 7:29,094,101...29,113,249 		JBrowse link
G SLC25A19 solute carrier family 25 member 19 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:5,208,982...5,226,925
Ensembl chr 9:5,209,059...5,226,569 		JBrowse link
G THTPA thiamine triphosphatase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:3,781,931...3,785,093
Ensembl chr 8:3,782,163...3,785,394 		JBrowse link
G TPK1 thiamin pyrophosphokinase 1 involved_in IEA InterPro
TreeGrafter
Ensembl
UniProt		 GO_REF:0000002 GO_REF:0000041 GO_REF:0000104 GO_REF:0000107 GO_REF:0000118 NCBI chr16:5,257,749...5,588,179
Ensembl chr16:5,257,205...5,636,153 		JBrowse link
vitamin E biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PLTP phospholipid transfer protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16467369) Ensembl
MGI		 PMID:16467369 GO_REF:0000107 NCBI chr24:33,189,098...33,199,935
Ensembl chr24:33,189,099...33,199,854 		JBrowse link
vitamin K biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G UBIAD1 UbiA prenyltransferase domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:84,803,338...84,813,030
Ensembl chr 2:84,804,935...84,813,344 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17878
    metabolic process 10933
      small molecule metabolic process 1817
        vitamin metabolic process 101
          vitamin biosynthetic process 22
            fat-soluble vitamin biosynthetic process + 9
            water-soluble vitamin biosynthetic process + 13
paths to the root