vitamin biosynthetic process - Ontology Report

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ONTOLOGY REPORT - ANNOTATIONS	{{ watchLinkText }}

Term:	vitamin biosynthetic process	go back to main search page
Accession:	GO:0009110	browse the term
Definition:	The chemical reactions and pathways resulting in the formation of a vitamin, one of a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body.
Synonyms:	exact_synonym:	vitamin anabolism; vitamin biosynthesis; vitamin formation; vitamin synthesis

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Rat (27) Mouse (26) Human (28) Chinchilla (20) Bonobo (24) Dog (24) Squirrel (24) Pig (25) Green Monkey (21) Naked Mole-rat (23) All
Genes (27)

calcitriol biosynthetic process from calciol

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

Cyp27a1

cytochrome P450, family 27, subfamily a, polypeptide 1

involved_in

IBA
IEA
ISO

PMID:21873635
GO_REF:0000107
(PMID:15465040)

Ensembl
RGD

PMID:15465040 PMID:21873635

GO_REF:0000107, RGD:13792537

NCBI chr 9:76,264,655...76,294,551
Ensembl chr 9:76,264,860...76,294,551

Cyp27b1

cytochrome P450, family 27, subfamily b, polypeptide 1

involved_in

ISO
IBA
IEA

(PMID:15795327), (PMID:16549446), (PMID:17023519), (PMID:22862690), (PMID:9415400)
PMID:21873635
GO_REF:0000107
(MGI:3590419|PMID:15972816)

RGD
Ensembl

PMID:9415400 PMID:15795327 PMID:15972816 PMID:16549446 PMID:17023519 More...

GO_REF:0000107 MGI:3590419, RGD:13792537

NCBI chr 7:62,869,340...62,876,242
Ensembl chr 7:62,871,297...62,876,241

Cyp2r1

cytochrome P450, family 2, subfamily r, polypeptide 1

involved_in
acts_upstream_of_or_within

ISO

(PMID:15465040), (PMID:18511070)
(MGI:2677973|PMID:12867411)

RGD

PMID:12867411 PMID:15465040 PMID:18511070

MGI:2677973

NCBI chr 1:168,749,302...168,798,079
Ensembl chr 1:168,751,038...168,797,759

Cyp3a2

cytochrome P450, family 3, subfamily a, polypeptide 2

involved_in

IEA

GO_REF:0000108

GOC

GO_REF:0000108

NCBI chr12:9,207,986...9,230,038
Ensembl chr12:9,015,383...9,285,008

L-ascorbic acid biosynthetic process

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

Akr1a1

aldo-keto reductase family 1 member A1

acts_upstream_of_or_within
involved_in

ISO
IMP

(MGI:3588122|PMID:15769935)
PMID:22820017
MGI:4239556 (MGI:4834110|PMID:20410296)

RGD

PMID:15769935 PMID:20410296 PMID:22820017

MGI:3588122 MGI:4834110, RGD:13825440

NCBI chr 5:130,092,945...130,130,277
Ensembl chr 5:130,092,732...130,113,674

Akr1b1

aldo-keto reductase family 1 member B1

involved_in

ISO

MGI:5008171 (MGI:4834110|PMID:20410296)

RGD

PMID:20410296

MGI:4834110

NCBI chr 4:62,932,033...62,946,126
Ensembl chr 4:62,932,031...62,946,157

Gsto1

glutathione S-transferase omega 1

IMP

RGD

PMID:9786866

RGD:70644

NCBI chr 1:246,721,089...246,731,228
Ensembl chr 1:246,721,221...246,731,468

Gulo

gulonolactone (L-) oxidase

involved_in

ISS
IEA

GO_REF:0000024
GO_REF:0000107

UniProt
Ensembl

GO_REF:0000024 GO_REF:0000107

NCBI chr15:40,205,677...40,227,766
Ensembl chr15:40,205,665...40,227,874

Rgn

regucalcin

involved_in

IBA
ISO
ISS

PMID:21873635
MGI:2670511 (MGI:3623658|PMID:16585534), (MGI:5486063|PMID:23349732)
GO_REF:0000024

RGD
UniProt

PMID:16585534 PMID:23349732 PMID:21873635

GO_REF:0000024 MGI:3623658 MGI:5486063, RGD:13792537

NCBI chr X:1,619,030...1,634,456
Ensembl chr X:1,619,032...1,634,450

negative regulation of calcidiol 1-monooxygenase activity

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

Cyp27b1

cytochrome P450, family 27, subfamily b, polypeptide 1

involved_in

ISO
IEA

(PMID:16549446)
GO_REF:0000107

RGD
Ensembl

PMID:16549446

GO_REF:0000107

NCBI chr 7:62,869,340...62,876,242
Ensembl chr 7:62,871,297...62,876,241

Gfi1

growth factor independent 1 transcriptional repressor

involved_in

ISO
IEA

(PMID:15947108)
GO_REF:0000107

RGD
Ensembl

PMID:15947108

GO_REF:0000107

NCBI chr14:2,040,576...2,056,874
Ensembl chr14:2,042,434...2,051,814

Nfkb1

nuclear factor kappa B subunit 1

involved_in

ISO
IEA

(PMID:15243130)
GO_REF:0000107

RGD
Ensembl

PMID:15243130

GO_REF:0000107

NCBI chr 2:224,016,214...224,132,135
Ensembl chr 2:224,016,214...224,110,404

negative regulation of vitamin D biosynthetic process

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

Snai1

snail family transcriptional repressor 1

involved_in

ISO

(PMID:19502595)

RGD

PMID:19502595

NCBI chr 3:156,248,479...156,252,969
Ensembl chr 3:156,248,485...156,252,969

Snai2

snail family transcriptional repressor 2

involved_in

ISO

(PMID:18485278), (PMID:19502595)

RGD

PMID:18485278 PMID:19502595

NCBI chr11:86,183,800...86,186,109
Ensembl chr11:86,181,909...86,186,200

positive regulation of vitamin D biosynthetic process

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

Ifng

interferon gamma

involved_in

ISO

(PMID:9282826)

RGD

PMID:9282826

NCBI chr 7:53,903,339...53,907,375
Ensembl chr 7:53,903,337...53,907,375

Tnf

tumor necrosis factor

involved_in

ISO

(PMID:1690216)

RGD

PMID:1690216

NCBI chr20:3,622,011...3,624,629
Ensembl chr20:3,622,011...3,624,629

pyridoxal 5'-phosphate salvage

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

Pdxk

pyridoxal kinase

involved_in

IBA
IEA

PMID:21873635
GO_REF:0000002

InterPro

PMID:21873635

GO_REF:0000002, RGD:13792537

NCBI chr20:10,210,393...10,231,937
Ensembl chr20:10,210,289...10,232,110

RGD1566085

similar to pyridoxal (pyridoxine, vitamin B6) kinase

involved_in

IEA

GO_REF:0000002

InterPro

GO_REF:0000002

NCBI chr20:10,162,934...10,192,610
Ensembl chr20:10,164,099...10,192,739

pyridoxal phosphate biosynthetic process

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

pyridoxal kinase

RGD

NCBI chr20:10,210,393...10,231,937
Ensembl chr20:10,210,289...10,232,110

Pnpo

pyridoxamine 5'-phosphate oxidase

involved_in

ISO
IBA

(PMID:12824491)
PMID:21873635

RGD

PMID:12824491 PMID:21873635

RGD:13792537

NCBI chr10:81,924,584...81,930,844
Ensembl chr10:81,924,569...81,930,871

pyridoxine biosynthetic process

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

Pnpo

pyridoxamine 5'-phosphate oxidase

involved_in

IEA

GO_REF:0000043

UniProt

GO_REF:0000043

NCBI chr10:81,924,584...81,930,844
Ensembl chr10:81,924,569...81,930,871

riboflavin biosynthetic process

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

AABR07053065.1

involved_in

IEA

GO_REF:0000002

InterPro

GO_REF:0000002

Ensembl chr 3:86,511,659...86,512,126

Rfk

riboflavin kinase

involved_in

IEA

GO_REF:0000002

InterPro

GO_REF:0000002

NCBI chr 1:214,799,880...214,807,440
Ensembl chr 1:214,799,825...214,807,438

thiamine diphosphate biosynthetic process

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

Slc19a2

solute carrier family 19 member 2

involved_in

ISO

(MGI:7484782|PMID:8186267)

RGD

PMID:8186267

MGI:7484782

NCBI chr13:76,601,975...76,616,175
Ensembl chr13:76,601,900...76,616,172

Slc19a3

solute carrier family 19 member 3

involved_in

ISO

MGI:4948864 (MGI:5917227|PMID:28665968), (MGI:7484782|PMID:8186267)

RGD

PMID:8186267 PMID:28665968

MGI:5917227 MGI:7484782

NCBI chr 9:84,275,722...84,299,368
Ensembl chr 9:84,277,024...84,299,337

Slc25a19

solute carrier family 25 member 19

involved_in

ISO

MGI:3691853 (MGI:3691401|PMID:17035501), (MGI:7484782|PMID:8186267)

RGD

PMID:8186267 PMID:17035501

MGI:3691401 MGI:7484782

NCBI chr10:100,853,554...100,867,517
Ensembl chr10:100,847,168...100,867,447

Thtpa

thiamine triphosphatase

involved_in

ISO

(MGI:3796446|PMID:18276586)

RGD

PMID:18276586

MGI:3796446

NCBI chr15:28,567,619...28,571,580
Ensembl chr15:28,567,323...28,571,580

Tpk1

thiamin pyrophosphokinase 1

involved_in

ISO
IBA
IEA

(PMID:11342111)
(MGI:1350425|PMID:10567383)
PMID:21873635
GO_REF:0000041

RGD
UniProt

PMID:10567383 PMID:11342111 PMID:21873635

GO_REF:0000041 MGI:1350425, RGD:13792537

NCBI chr 4:72,170,134...72,557,707
Ensembl chr 4:72,170,134...72,557,694

vitamin E biosynthetic process

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

Pltp

phospholipid transfer protein

acts_upstream_of_or_within

ISO

MGI:2176342 (MGI:3622506|PMID:16467369)

RGD

PMID:16467369

MGI:3622506

NCBI chr 3:153,574,825...153,592,647
Ensembl chr 3:153,574,825...153,592,647

vitamin K biosynthetic process

Symbol

Object Name

Qualifiers

Evidence

Notes

Source

PubMed Reference(s)

RGD Reference(s)

Position

Ubiad1

UbiA prenyltransferase domain containing 1

involved_in

ISS
IBA
ISO

GO_REF:0000024
PMID:21873635
(PMID:20953171), (PMID:23169578)

UniProt
RGD

PMID:20953171 PMID:23169578 PMID:21873635

GO_REF:0000024, RGD:13792537

NCBI chr 5:158,856,582...158,880,490
Ensembl chr 5:158,868,672...158,880,271

Term paths to the root

Path 1
Term	Annotations
biological_process	19818
metabolic process	12096
small molecule metabolic process	1916
vitamin metabolic process	97
vitamin biosynthetic process	27
fat-soluble vitamin biosynthetic process +	12
water-soluble vitamin biosynthetic process +	15

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ONTOLOGY REPORT - ANNOTATIONS