ONTOLOGY REPORT - ANNOTATIONS
Term: vitamin biosynthetic process
Accession: GO:0009110
browse the term
Definition: The chemical reactions and pathways resulting in the formation of a vitamin, one of a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body.
Synonyms: exact_synonym: vitamin anabolism; vitamin biosynthesis; vitamin formation; vitamin synthesis
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Cyp27a1
cytochrome P450, family 27, subfamily a, polypeptide 1
involved_in
IBA IEA ISO
PMID:21873635 GO_REF:0000107 (PMID:15465040)
Ensembl RGD
PMID:15465040 PMID:21873635
GO_REF:0000107, RGD:13792537
NCBI chr 9:76,264,655...76,294,551
Ensembl chr 9:76,264,860...76,294,551
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Cyp27b1
cytochrome P450, family 27, subfamily b, polypeptide 1
involved_in
ISO IBA IEA
(PMID:15795327), (PMID:16549446), (PMID:17023519), (PMID:22862690), (PMID:9415400) PMID:21873635 GO_REF:0000107 (MGI:3590419|PMID:15972816)
RGD Ensembl
PMID:9415400 PMID:15795327 PMID:15972816 PMID:16549446 PMID:17023519 PMID:22862690 PMID:21873635 More...
GO_REF:0000107 MGI:3590419 , RGD:13792537
NCBI chr 7:62,869,340...62,876,242
Ensembl chr 7:62,871,297...62,876,241
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Cyp2r1
cytochrome P450, family 2, subfamily r, polypeptide 1
involved_in acts_upstream_of_or_within
ISO
(PMID:15465040), (PMID:18511070) (MGI:2677973|PMID:12867411)
RGD
PMID:12867411 PMID:15465040 PMID:18511070
MGI:2677973
NCBI chr 1:168,749,302...168,798,079
Ensembl chr 1:168,751,038...168,797,759
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Cyp3a2
cytochrome P450, family 3, subfamily a, polypeptide 2
involved_in
IEA
GO_REF:0000108
GOC
GO_REF:0000108
NCBI chr12:9,207,986...9,230,038
Ensembl chr12:9,015,383...9,285,008
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Akr1a1
aldo-keto reductase family 1 member A1
acts_upstream_of_or_within involved_in
ISO IMP
(MGI:3588122|PMID:15769935) PMID:22820017 MGI:4239556 (MGI:4834110|PMID:20410296)
RGD
PMID:15769935 PMID:20410296 PMID:22820017
MGI:3588122 MGI:4834110 , RGD:13825440
NCBI chr 5:130,092,945...130,130,277
Ensembl chr 5:130,092,732...130,113,674
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Akr1b1
aldo-keto reductase family 1 member B1
involved_in
ISO
MGI:5008171 (MGI:4834110|PMID:20410296)
RGD
PMID:20410296
MGI:4834110
NCBI chr 4:62,932,033...62,946,126
Ensembl chr 4:62,932,031...62,946,157
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Gsto1
glutathione S-transferase omega 1
IMP
RGD
PMID:9786866
RGD:70644
NCBI chr 1:246,721,089...246,731,228
Ensembl chr 1:246,721,221...246,731,468
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Gulo
gulonolactone (L-) oxidase
involved_in
ISS IEA
GO_REF:0000024 GO_REF:0000107
UniProt Ensembl
GO_REF:0000024 GO_REF:0000107
NCBI chr15:40,205,677...40,227,766
Ensembl chr15:40,205,665...40,227,874
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Rgn
regucalcin
involved_in
IBA ISO ISS
PMID:21873635 MGI:2670511 (MGI:3623658|PMID:16585534), (MGI:5486063|PMID:23349732) GO_REF:0000024
RGD UniProt
PMID:16585534 PMID:23349732 PMID:21873635
GO_REF:0000024 MGI:3623658 MGI:5486063 , RGD:13792537
NCBI chr X:1,619,030...1,634,456
Ensembl chr X:1,619,032...1,634,450
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Cyp27b1
cytochrome P450, family 27, subfamily b, polypeptide 1
involved_in
ISO IEA
(PMID:16549446) GO_REF:0000107
RGD Ensembl
PMID:16549446
GO_REF:0000107
NCBI chr 7:62,869,340...62,876,242
Ensembl chr 7:62,871,297...62,876,241
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Gfi1
growth factor independent 1 transcriptional repressor
involved_in
ISO IEA
(PMID:15947108) GO_REF:0000107
RGD Ensembl
PMID:15947108
GO_REF:0000107
NCBI chr14:2,040,576...2,056,874
Ensembl chr14:2,042,434...2,051,814
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Nfkb1
nuclear factor kappa B subunit 1
involved_in
ISO IEA
(PMID:15243130) GO_REF:0000107
RGD Ensembl
PMID:15243130
GO_REF:0000107
NCBI chr 2:224,016,214...224,132,135
Ensembl chr 2:224,016,214...224,110,404
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Snai1
snail family transcriptional repressor 1
involved_in
ISO
(PMID:19502595)
RGD
PMID:19502595
NCBI chr 3:156,248,479...156,252,969
Ensembl chr 3:156,248,485...156,252,969
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Snai2
snail family transcriptional repressor 2
involved_in
ISO
(PMID:18485278), (PMID:19502595)
RGD
PMID:18485278 PMID:19502595
NCBI chr11:86,183,800...86,186,109
Ensembl chr11:86,181,909...86,186,200
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Ifng
interferon gamma
involved_in
ISO
(PMID:9282826)
RGD
PMID:9282826
NCBI chr 7:53,903,339...53,907,375
Ensembl chr 7:53,903,337...53,907,375
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Tnf
tumor necrosis factor
involved_in
ISO
(PMID:1690216)
RGD
PMID:1690216
NCBI chr20:3,622,011...3,624,629
Ensembl chr20:3,622,011...3,624,629
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Pdxk
pyridoxal kinase
involved_in
IBA IEA
PMID:21873635 GO_REF:0000002
InterPro
PMID:21873635
GO_REF:0000002, RGD:13792537
NCBI chr20:10,210,393...10,231,937
Ensembl chr20:10,210,289...10,232,110
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RGD1566085
similar to pyridoxal (pyridoxine, vitamin B6) kinase
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr20:10,162,934...10,192,610
Ensembl chr20:10,164,099...10,192,739
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Pdxk
pyridoxal kinase
IDA
RGD
PMID:2988502
RGD:2303018
NCBI chr20:10,210,393...10,231,937
Ensembl chr20:10,210,289...10,232,110
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Pnpo
pyridoxamine 5'-phosphate oxidase
involved_in
ISO IBA
(PMID:12824491) PMID:21873635
RGD
PMID:12824491 PMID:21873635
RGD:13792537
NCBI chr10:81,924,584...81,930,844
Ensembl chr10:81,924,569...81,930,871
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Pnpo
pyridoxamine 5'-phosphate oxidase
involved_in
IEA
GO_REF:0000043
UniProt
GO_REF:0000043
NCBI chr10:81,924,584...81,930,844
Ensembl chr10:81,924,569...81,930,871
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AABR07053065.1
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
Ensembl chr 3:86,511,659...86,512,126
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Rfk
riboflavin kinase
involved_in
IEA
GO_REF:0000002
InterPro
GO_REF:0000002
NCBI chr 1:214,799,880...214,807,440
Ensembl chr 1:214,799,825...214,807,438
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Slc19a2
solute carrier family 19 member 2
involved_in
ISO
(MGI:7484782|PMID:8186267)
RGD
PMID:8186267
MGI:7484782
NCBI chr13:76,601,975...76,616,175
Ensembl chr13:76,601,900...76,616,172
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Slc19a3
solute carrier family 19 member 3
involved_in
ISO
MGI:4948864 (MGI:5917227|PMID:28665968), (MGI:7484782|PMID:8186267)
RGD
PMID:8186267 PMID:28665968
MGI:5917227 MGI:7484782
NCBI chr 9:84,275,722...84,299,368
Ensembl chr 9:84,277,024...84,299,337
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Slc25a19
solute carrier family 25 member 19
involved_in
ISO
MGI:3691853 (MGI:3691401|PMID:17035501), (MGI:7484782|PMID:8186267)
RGD
PMID:8186267 PMID:17035501
MGI:3691401 MGI:7484782
NCBI chr10:100,853,554...100,867,517
Ensembl chr10:100,847,168...100,867,447
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Thtpa
thiamine triphosphatase
involved_in
ISO
(MGI:3796446|PMID:18276586)
RGD
PMID:18276586
MGI:3796446
NCBI chr15:28,567,619...28,571,580
Ensembl chr15:28,567,323...28,571,580
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Tpk1
thiamin pyrophosphokinase 1
involved_in
ISO IBA IEA
(PMID:11342111) (MGI:1350425|PMID:10567383) PMID:21873635 GO_REF:0000041
RGD UniProt
PMID:10567383 PMID:11342111 PMID:21873635
GO_REF:0000041 MGI:1350425 , RGD:13792537
NCBI chr 4:72,170,134...72,557,707
Ensembl chr 4:72,170,134...72,557,694
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Pltp
phospholipid transfer protein
acts_upstream_of_or_within
ISO
MGI:2176342 (MGI:3622506|PMID:16467369)
RGD
PMID:16467369
MGI:3622506
NCBI chr 3:153,574,825...153,592,647
Ensembl chr 3:153,574,825...153,592,647
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Ubiad1
UbiA prenyltransferase domain containing 1
involved_in
ISS IBA ISO
GO_REF:0000024 PMID:21873635 (PMID:20953171), (PMID:23169578)
UniProt RGD
PMID:20953171 PMID:23169578 PMID:21873635
GO_REF:0000024, RGD:13792537
NCBI chr 5:158,856,582...158,880,490
Ensembl chr 5:158,868,672...158,880,271
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