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ONTOLOGY REPORT - ANNOTATIONS


Term:glutamine family amino acid biosynthetic process
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Accession:GO:0009084 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of amino acids of the glutamine family, comprising arginine, glutamate, glutamine and proline.
Synonyms:exact_synonym: glutamine family amino acid anabolism;   glutamine family amino acid biosynthesis;   glutamine family amino acid formation;   glutamine family amino acid synthesis



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arginine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASS1 argininosuccinate synthase 1 involved_in IBA
ISO
IEA
(PMID:21873635) GO_Central
RGD
UniProt
PMID:12470967 PMID:21873635 GO_REF:0000041 RGD:631755 NCBI chr 9:53,425,228...53,478,007
Ensembl chr 9:53,425,448...53,477,904
JBrowse link
G NAGS N-acetylglutamate synthase involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:19,344,073...19,349,395
Ensembl chr 9:19,344,902...19,349,207
JBrowse link
arginine biosynthetic process via ornithine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OTC ornithine transcarbamylase involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr  X:33,130,921...33,200,441
Ensembl chr  X:33,131,040...33,199,595
JBrowse link
glutamate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GLS glutaminase involved_in ISO (MGI:5320252|PMID:22228304)
(PMID:16899818), (PMID:22049910)
UniProt PMID:16899818 PMID:22049910 PMID:22228304 MGI:5320252 NCBI chr37:1,433,640...1,508,347
Ensembl chr37:1,433,398...1,508,146
JBrowse link
G GLS2 glutaminase 2 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:722,105...737,857
Ensembl chr10:722,202...737,753
JBrowse link
G GLUD1 glutamate dehydrogenase 1 involved_in ISO (PMID:11032875) BHF-UCL PMID:11032875 NCBI chr 4:34,629,046...34,662,711 JBrowse link
G SLC25A12 solute carrier family 25 member 12 ISO RGD PMID:19764902 RGD:13628741 NCBI chr36:16,185,011...16,391,080
Ensembl chr36:16,185,649...16,483,016
JBrowse link
glutamine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GLUL glutamate-ammonia ligase involved_in IBA
ISO
(PMID:21873635) GO_Central
RGD
PMID:28323 PMID:4403443 PMID:21873635 RGD:2301547 RGD:2301548 NCBI chr 7:15,730,898...15,740,241
Ensembl chr 7:15,730,898...15,740,241
JBrowse link
G LGSN lengsin, lens protein with glutamine synthetase domain involved_in IEA InterPro GO_REF:0000002 NCBI chr12:26,852,832...26,884,307
Ensembl chr12:26,852,851...26,919,138
JBrowse link
L-proline biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH18A1 aldehyde dehydrogenase 18 family member A1 involved_in IEA UniProt GO_REF:0000041 NCBI chr28:9,101,578...9,148,063
Ensembl chr28:9,102,282...9,147,992
JBrowse link
G OAT ornithine aminotransferase involved_in IEA UniProt GO_REF:0000041 NCBI chr28:33,763,661...33,788,817
Ensembl chr28:33,758,473...33,788,759
JBrowse link
G PYCR2 pyrroline-5-carboxylate reductase 2 involved_in IEA
IBA
(PMID:21873635) UniProt
GO_Central
PMID:21873635 GO_REF:0000041 NCBI chr 7:38,902,705...38,905,924 JBrowse link
G PYCR3 pyrroline-5-carboxylate reductase 3 involved_in ISO (PMID:23024808) UniProt PMID:23024808 NCBI chr13:37,259,139...37,264,337
Ensembl chr13:37,259,139...37,264,337
JBrowse link
proline biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH18A1 aldehyde dehydrogenase 18 family member A1 involved_in ISO (PMID:11092761), (PMID:26297558) UniProt PMID:11092761 PMID:26297558 NCBI chr28:9,101,578...9,148,063
Ensembl chr28:9,102,282...9,147,992
JBrowse link
G PYCR1 pyrroline-5-carboxylate reductase 1 involved_in ISO (PMID:16730026) UniProt PMID:16730026 NCBI chr 9:360,353...364,795
Ensembl chr 9:360,376...364,570
JBrowse link
G PYCR2 pyrroline-5-carboxylate reductase 2 involved_in ISO (PMID:23024808) UniProt PMID:23024808 NCBI chr 7:38,902,705...38,905,924 JBrowse link
regulation of arginine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in IEA
ISS
Ensembl
UniProt
GO_REF:0000024 GO_REF:0000107 NCBI chr 6:18,252,543...18,266,033
Ensembl chr 6:18,254,139...18,266,033
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 13969
    metabolic process 9103
      primary metabolic process 7996
        cellular amino acid metabolic process 222
          cellular amino acid biosynthetic process 55
            alpha-amino acid biosynthetic process 50
              glutamine family amino acid biosynthetic process 15
                arginine biosynthetic process + 4
                glutamate biosynthetic process + 4
                glutamine biosynthetic process + 2
                proline biosynthetic process + 5
Path 2
Term Annotations click to browse term
  biological_process 13969
    metabolic process 9103
      cellular metabolic process 8264
        organic acid metabolic process 775
          oxoacid metabolic process 750
            carboxylic acid metabolic process 735
              carboxylic acid biosynthetic process 236
                cellular amino acid biosynthetic process 55
                  alpha-amino acid biosynthetic process 50
                    glutamine family amino acid biosynthetic process 15
                      arginine biosynthetic process + 4
                      glutamate biosynthetic process + 4
                      glutamine biosynthetic process + 2
                      proline biosynthetic process + 5
paths to the root