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ONTOLOGY REPORT - ANNOTATIONS


Term:branched-chain amino acid metabolic process
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Accession:GO:0009081 term browser browse the term
Definition:The chemical reactions and pathways involving amino acids containing a branched carbon skeleton, comprising isoleucine, leucine and valine.
Synonyms:exact_synonym: branched chain family amino acid metabolism


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branched-chain amino acid metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcat2 branched chain amino acid transaminase 2 TAS
ISO
MGI:3772355 (MGI:4442298|PMID:20237068) RGD PMID:20237068, PMID:11171603 MGI:4442298, RGD:62398 NCBI chr 1:101,553,900...101,572,103
Ensembl chr 1:101,554,642...101,572,080
JBrowse link
branched-chain amino acid biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcat1 branched chain amino acid transaminase 1 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 4:179,259,305...179,340,021
Ensembl chr 4:179,259,308...179,339,795
JBrowse link
G Bcat2 branched chain amino acid transaminase 2 IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 1:101,553,900...101,572,103
Ensembl chr 1:101,554,642...101,572,080
JBrowse link
branched-chain amino acid catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcat1 branched chain amino acid transaminase 1 ISO (MGI:3027291|PMID:14755340) RGD PMID:14755340 MGI:3027291 NCBI chr 4:179,259,305...179,340,021
Ensembl chr 4:179,259,308...179,339,795
JBrowse link
G Bcat2 branched chain amino acid transaminase 2 IDA
ISO
MGI:3028726 (MGI:3027291|PMID:14755340) RGD PMID:14755340, PMID:11733007 MGI:3027291, RGD:1582175 NCBI chr 1:101,553,900...101,572,103
Ensembl chr 1:101,554,642...101,572,080
JBrowse link
G Bckdha branched chain keto acid dehydrogenase E1 subunit alpha TAS
IBA
IEA
ISS
ISO
PMID:21873635
GO_REF:0000002
GO_REF:0000024
(PMID:7883996)
InterPro
HGNC
RGD
PMID:7883996, PMID:2822716, PMID:21873635 GO_REF:0000002, GO_REF:0000024, RGD:631719, RGD:13792537 NCBI chr 1:82,423,291...82,452,094
Ensembl chr 1:82,423,277...82,452,281
JBrowse link
G Bckdhb branched chain keto acid dehydrogenase E1 subunit beta ISO
IBA
ISS
IEA
(PMID:2022752)
PMID:21873635
GO_REF:0000024
GO_REF:0000107
RGD
HGNC
Ensembl
PMID:2022752, PMID:21873635 GO_REF:0000024, GO_REF:0000107, RGD:13792537 NCBI chr 8:91,464,229...91,656,134
Ensembl chr 8:91,464,229...91,656,134
JBrowse link
G Bckdk branched chain ketoacid dehydrogenase kinase TAS
IDA
PMID:1377677 RGD
HGNC
PMID:11562470, PMID:1377677 RGD:68918, RGD:68712 NCBI chr 1:199,351,628...199,356,299
Ensembl chr 1:199,351,628...199,356,881
JBrowse link
G Ivd isovaleryl-CoA dehydrogenase ISO (PMID:7640268) RGD PMID:7640268 NCBI chr 3:110,669,355...110,689,789
Ensembl chr 3:110,669,312...110,690,173
JBrowse link
G Slc25a44 solute carrier family 25, member 44 ISO (PMID:31435015)
(MGI:6359503|PMID:31435015)
RGD PMID:31435015 MGI:6359503 NCBI chr 2:187,772,013...187,786,829
Ensembl chr 2:187,774,062...187,786,731
JBrowse link
isoleucine biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ilvbl ilvB acetolactate synthase like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:14,044,586...14,054,639
Ensembl chr 7:14,044,586...14,054,639
JBrowse link
G Sds serine dehydratase IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:41,620,429...41,627,741
Ensembl chr12:41,620,393...41,627,741
JBrowse link
G Sdsl serine dehydratase-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:41,636,994...41,647,205
Ensembl chr12:41,636,994...41,647,205
JBrowse link
isoleucine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acadsb acyl-CoA dehydrogenase, short/branched chain ISO
ISS
(PMID:11013134)
GO_REF:0000024
RGD
UniProt
PMID:11013134 GO_REF:0000024 NCBI chr 1:201,981,362...202,022,771
Ensembl chr 1:201,981,357...202,021,008
JBrowse link
G Acat1 acetyl-CoA acetyltransferase 1 ISO (PMID:1979337), (PMID:8103405) RGD PMID:1979337, PMID:8103405 NCBI chr 8:58,166,990...58,195,884
Ensembl chr 8:58,166,990...58,195,884
JBrowse link
G Bcat2 branched chain amino acid transaminase 2 IDA
ISO
IEA
MGI:3772355 (MGI:3770498|PMID:17767905)
GO_REF:0000107
RGD
Ensembl
PMID:17767905, PMID:11733007 GO_REF:0000107, MGI:3770498, RGD:1582175 NCBI chr 1:101,553,900...101,572,103
Ensembl chr 1:101,554,642...101,572,080
JBrowse link
G Bckdk branched chain ketoacid dehydrogenase kinase IMP RGD PMID:27472223 RGD:39131293 NCBI chr 1:199,351,628...199,356,299
Ensembl chr 1:199,351,628...199,356,881
JBrowse link
G Hsd17b10 hydroxysteroid (17-beta) dehydrogenase 10 ISO
ISS
(PMID:18996107), (PMID:19706438)
GO_REF:0000024
RGD
UniProt
PMID:18996107, PMID:19706438 GO_REF:0000024 NCBI chr  X:21,696,796...21,699,241
Ensembl chr  X:21,696,772...21,699,241
JBrowse link
isoleucine metabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcat2 branched chain amino acid transaminase 2 ISO MGI:3028726 (MGI:3027291|PMID:14755340) RGD PMID:14755340 MGI:3027291 NCBI chr 1:101,553,900...101,572,103
Ensembl chr 1:101,554,642...101,572,080
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20020
    metabolic process 12263
      cellular metabolic process 11073
        organic acid metabolic process 1008
          branched-chain amino acid metabolic process 13
            D-leucine metabolic process + 0
            D-valine metabolic process + 0
            branched-chain amino acid biosynthetic process + 5
            branched-chain amino acid catabolic process + 10
            isoleucine metabolic process + 8
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.