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ONTOLOGY REPORT - ANNOTATIONS

Term:aromatic amino acid family biosynthetic process
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Accession:GO:0009073 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan).
Synonyms:exact_synonym: aromatic amino acid family anabolism;   aromatic amino acid family biosynthesis;   aromatic amino acid family formation;   aromatic amino acid family synthesis
 related_synonym: aromatic amino acid family biosynthetic process, shikimate pathway
 alt_id: GO:0016089
 xref: MetaCyc:COMPLETE-ARO-PWY


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L-phenylalanine biosynthetic process from chorismate via phenylpyruvate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENSRNOG00000064101 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 Ensembl chr 3:9,679,203...9,680,482 JBrowse link
G Got2 glutamic-oxaloacetic transaminase 2 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr19:9,174,304...9,199,995
Ensembl chr19:9,174,311...9,199,994 		JBrowse link
G Got2-ps6 glutamic-oxaloacetic transaminase 2, pseudogene 6 involved_in IEA GO_REF:0000118 TreeGrafter GO_REF:0000118 NCBI chr  X:60,551,686...60,552,959
Ensembl chr  X:60,551,686...60,552,959 		JBrowse link
positive regulation of L-dopa biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Park7 Parkinsonism associated deglycase involved_in ISO
ISS
IEA		 (PMID:16731528)
GO_REF:0000024
GO_REF:0000107		 RGD
ParkinsonsUK-UCL
Ensembl		 PMID:16731528 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:161,353,718...161,376,993
Ensembl chr 5:161,353,719...161,376,970 		JBrowse link
tyrosine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pah phenylalanine hydroxylase involved_in IDA
IBA		 GO_REF:0000033 GO_Central
RGD		 PMID:16953590 GO_REF:0000033, RGD:1601531 NCBI chr 7:21,933,179...21,998,134
Ensembl chr 7:21,933,179...21,998,130 		JBrowse link
tyrosine biosynthetic process, by oxidation of phenylalanine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pah phenylalanine hydroxylase acts_upstream_of_or_within
involved_in		 IDA
ISO
IEA		 MGI:1857271 (MGI:58807|PMID:2308957)
GO_REF:0000108		 RGD
GOC		 PMID:2308957 PMID:10839989 GO_REF:0000108 MGI:58807, RGD:1601535 NCBI chr 7:21,933,179...21,998,134
Ensembl chr 7:21,933,179...21,998,130 		JBrowse link
G Pcbd1 pterin-4 alpha-carbinolamine dehydratase 1 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr20:29,037,545...29,044,322
Ensembl chr20:28,953,864...29,044,292
Ensembl chr20:28,953,864...29,044,292 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20292
    metabolic process 11720
      primary metabolic process 10271
        amino acid metabolic process 302
          aromatic amino acid metabolic process 35
            aromatic amino acid family biosynthetic process 6
              L-dopa biosynthetic process + 1
              aromatic amino acid family biosynthetic process, prephenate pathway + 5
              para-aminobenzoic acid biosynthetic process 0
              tryptophan biosynthetic process 0
Path 2
Term Annotations click to browse term
  biological_process 20292
    metabolic process 11720
      small molecule metabolic process 1938
        organic acid metabolic process 1074
          oxoacid metabolic process 1056
            carboxylic acid metabolic process 1037
              aromatic amino acid metabolic process 35
                aromatic amino acid family biosynthetic process 6
                  L-dopa biosynthetic process + 1
                  aromatic amino acid family biosynthetic process, prephenate pathway + 5
                  para-aminobenzoic acid biosynthetic process 0
                  tryptophan biosynthetic process 0
paths to the root