Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:aromatic amino acid family biosynthetic process
go back to main search page
Accession:GO:0009073 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan).
Synonyms:exact_synonym: aromatic amino acid family anabolism;   aromatic amino acid family biosynthesis;   aromatic amino acid family formation;   aromatic amino acid family synthesis
 related_synonym: aromatic amino acid family biosynthetic process, shikimate pathway
 alt_id: GO:0016089
 xref: MetaCyc:COMPLETE-ARO-PWY


show annotations for term's descendants           Sort by:
L-phenylalanine biosynthetic process from chorismate via phenylpyruvate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GOT2 glutamic-oxaloacetic transaminase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:38,995,770...39,022,750
Ensembl chr16:58,120,781...58,147,378 		JBrowse link
positive regulation of L-dopa biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PARK7 Parkinsonism associated deglycase involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:6,722,260...6,745,915
Ensembl chr 1:7,969,280...7,993,271 		JBrowse link
tyrosine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PAH phenylalanine hydroxylase ISO RGD PMID:16953590 RGD:1601531 NCBI chr12:100,417,267...100,496,888
Ensembl chr12:103,811,761...103,891,726 		JBrowse link
tyrosine biosynthetic process, by oxidation of phenylalanine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PAH phenylalanine hydroxylase acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:58807|PMID:2308957) RGD
GOC
GOC		 PMID:2308957 PMID:10839989 GO_REF:0000108 MGI:58807 RGD:1601535 NCBI chr12:100,417,267...100,496,888
Ensembl chr12:103,811,761...103,891,726 		JBrowse link
G PCBD1 pterin-4 alpha-carbinolamine dehydratase 1 involved_in IEA GOC GO_REF:0000108 NCBI chr10:67,353,903...67,359,073
Ensembl chr10:69,878,773...69,881,174 		JBrowse link
G PCBD2 pterin-4 alpha-carbinolamine dehydratase 2 involved_in IEA GOC GO_REF:0000108 NCBI chr 5:130,303,900...130,364,899
Ensembl chr 5:136,446,730...136,497,011 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16313
    metabolic process 10179
      primary metabolic process 8792
        amino acid metabolic process 285
          aromatic amino acid metabolic process 33
            aromatic amino acid family biosynthetic process 5
              L-dopa biosynthetic process + 1
              aromatic amino acid family biosynthetic process, prephenate pathway + 4
              para-aminobenzoic acid biosynthetic process 0
              tryptophan biosynthetic process 0
Path 2
Term Annotations click to browse term
  biological_process 16313
    metabolic process 10179
      small molecule metabolic process 1654
        organic acid metabolic process 899
          oxoacid metabolic process 892
            carboxylic acid metabolic process 870
              aromatic amino acid metabolic process 33
                aromatic amino acid family biosynthetic process 5
                  L-dopa biosynthetic process + 1
                  aromatic amino acid family biosynthetic process, prephenate pathway + 4
                  para-aminobenzoic acid biosynthetic process 0
                  tryptophan biosynthetic process 0
paths to the root