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ONTOLOGY REPORT - ANNOTATIONS


Term:serine family amino acid catabolic process
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Accession:GO:0009071 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of amino acids of the serine family, comprising cysteine, glycine, homoserine, selenocysteine and serine.
Synonyms:exact_synonym: serine family amino acid breakdown;   serine family amino acid catabolism;   serine family amino acid degradation


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serine family amino acid catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Thnsl2 threonine synthase-like 2 ISO
IBA
(MGI:3690523|PMID:17034760)
PMID:21873635
RGD PMID:17034760, PMID:21873635 MGI:3690523, RGD:13792537 NCBI chr 4:98,976,559...98,997,187
Ensembl chr 4:98,976,550...98,995,590
JBrowse link
D-serine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dao D-amino-acid oxidase IEA
ISO
IBA
GO_REF:0000107
(PMID:18544534)
PMID:21873635
Ensembl
RGD
PMID:18544534, PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr12:48,353,691...48,373,647
Ensembl chr12:48,354,196...48,365,784
JBrowse link
glycine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gldc glycine decarboxylase ISO (PMID:28244183) RGD PMID:28244183 NCBI chr 1:248,295,140...248,377,122
Ensembl chr 1:248,297,331...248,377,093
JBrowse link
glycine decarboxylation via glycine cleavage system term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07007134.1 IEA GO_REF:0000104 UniProt GO_REF:0000104 Ensembl chr 1:282,557,426...282,557,923 JBrowse link
G AABR07067762.1 IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 9:61,738,471...61,739,134 JBrowse link
G Amt aminomethyltransferase ISO
IBA
(PMID:16051266)
PMID:21873635
RGD PMID:16051266, PMID:21873635 RGD:13792537 NCBI chr 8:117,068,388...117,078,633
Ensembl chr 8:117,068,582...117,077,913
JBrowse link
G Gcsh glycine cleavage system protein H IMP RGD PMID:6402507 RGD:1598699 NCBI chr19:49,522,054...49,532,811
Ensembl chr19:49,522,054...49,532,811
JBrowse link
G Gldc glycine decarboxylase IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:6778858, PMID:21873635 RGD:1642728, RGD:13792537 NCBI chr 1:248,295,140...248,377,122
Ensembl chr 1:248,297,331...248,377,093
JBrowse link
G RGD1563099 similar to Gcsh protein IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 1:282,557,429...282,557,979 JBrowse link
L-cysteine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agxt alanine--glyoxylate and serine--pyruvate aminotransferase ISO (PMID:18492492) RGD PMID:18492492 NCBI chr 9:100,281,339...100,291,292
Ensembl chr 9:100,281,339...100,291,291
JBrowse link
G Cbs cystathionine beta synthase ISO (PMID:15520012) RGD PMID:15520012 NCBI chr20:10,361,987...10,386,663
Ensembl chr20:10,361,988...10,386,751
JBrowse link
G Cdo1 cysteine dioxygenase type 1 IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:16611641, PMID:21873635 RGD:2301357, RGD:13792537 NCBI chr18:40,702,027...40,716,901
Ensembl chr18:40,701,984...40,716,686
JBrowse link
L-cysteine catabolic process to hypotaurine term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Csad cysteine sulfinic acid decarboxylase IDA PMID:9635011 UniProt PMID:9635011 RGD:13800536 NCBI chr 7:143,781,520...143,810,880
Ensembl chr 7:143,781,702...143,793,970
JBrowse link
L-cysteine catabolic process to taurine term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Csad cysteine sulfinic acid decarboxylase IDA PMID:9635011 UniProt PMID:9635011 RGD:13800536 NCBI chr 7:143,781,520...143,810,880
Ensembl chr 7:143,781,702...143,793,970
JBrowse link
L-serine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbs cystathionine beta synthase ISO (PMID:18776696) RGD PMID:18776696 NCBI chr20:10,361,987...10,386,663
Ensembl chr20:10,361,988...10,386,751
JBrowse link
G Sds serine dehydratase IEA
ISO
GO_REF:0000107
(PMID:15689518), (PMID:18342636)
Ensembl
RGD
PMID:15689518, PMID:18342636 GO_REF:0000107 NCBI chr12:41,620,429...41,627,741
Ensembl chr12:41,620,393...41,627,741
JBrowse link
G Shmt1 serine hydroxymethyltransferase 1 ISO
IBA
(PMID:17482557)
PMID:21873635
RGD PMID:17482557, PMID:21873635 RGD:13792537 NCBI chr10:47,030,813...47,059,216
Ensembl chr10:47,031,050...47,059,216
JBrowse link
G Shmt2 serine hydroxymethyltransferase 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:70,824,718...70,829,822
Ensembl chr 7:70,824,715...70,829,815
JBrowse link
selenocysteine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Scly selenocysteine lyase IMP PMID:20164179 CAFA PMID:20164179 RGD:12793035 NCBI chr 9:98,438,408...98,459,075
Ensembl chr 9:98,438,439...98,459,080
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20030
    metabolic process 12185
      nitrogen compound metabolic process 10212
        organonitrogen compound metabolic process 6949
          organonitrogen compound catabolic process 1323
            alpha-amino acid catabolic process 79
              serine family amino acid catabolic process 16
                D-serine catabolic process 1
                L-serine catabolic process 4
                cysteine catabolic process + 4
                glycine catabolic process + 6
                homoserine catabolic process 0
                selenocysteine catabolic process 1
Path 2
Term Annotations click to browse term
  biological_process 20030
    metabolic process 12185
      cellular metabolic process 10964
        organic acid metabolic process 1007
          oxoacid metabolic process 969
            carboxylic acid metabolic process 950
              cellular amino acid metabolic process 268
                alpha-amino acid metabolic process 190
                  alpha-amino acid catabolic process 79
                    serine family amino acid catabolic process 16
                      D-serine catabolic process 1
                      L-serine catabolic process 4
                      cysteine catabolic process + 4
                      glycine catabolic process + 6
                      homoserine catabolic process 0
                      selenocysteine catabolic process 1
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.