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ONTOLOGY REPORT - ANNOTATIONS

Term:aspartate family amino acid catabolic process
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Accession:GO:0009068 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of amino acids of the aspartate family, comprising asparagine, aspartate, lysine, methionine and threonine.
Synonyms:exact_synonym: aspartate family amino acid breakdown;   aspartate family amino acid catabolism;   aspartate family amino acid degradation

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asparagine catabolic process via L-aspartate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asrgl1 asparaginase and isoaspartyl peptidase 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 PMID:12753071 MGI
TreeGrafter
Ensembl		 PMID:12753071 GO_REF:0000107 GO_REF:0000118 RGD:1299508 NCBI chrNW_004936581:823,665...847,579
Ensembl chrNW_004936581:821,771...847,704 		JBrowse link
aspartate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddo D-aspartate oxidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936564:6,280,890...6,299,838
Ensembl chrNW_004936564:6,280,014...6,299,856 		JBrowse link
G Got1 glutamic-oxaloacetic transaminase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936636:617,376...640,424
Ensembl chrNW_004936636:617,356...640,932 		JBrowse link
G LOC101962681 aspartate aminotransferase, mitochondrial-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936527:626,017...628,228 JBrowse link
G LOC101977971 aspartate aminotransferase, mitochondrial-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936739:419,221...420,552 JBrowse link
L-lysine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aass aminoadipate-semialdehyde synthase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10567240) Ensembl
MGI		 PMID:10567240 GO_REF:0000107 NCBI chrNW_004936605:3,135,977...3,190,956
Ensembl chrNW_004936605:3,136,018...3,190,948 		JBrowse link
L-lysine catabolic process to acetyl-CoA via L-pipecolate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pipox pipecolic acid and sarcosine oxidase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936538:5,218,097...5,252,579
Ensembl chrNW_004936538:5,228,418...5,242,668 		JBrowse link
L-lysine catabolic process to acetyl-CoA via saccharopine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aass aminoadipate-semialdehyde synthase involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004936605:3,135,977...3,190,956
Ensembl chrNW_004936605:3,136,018...3,190,948 		JBrowse link
G Dlst dihydrolipoamide S-succinyltransferase involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004936488:4,038,985...4,061,071
Ensembl chrNW_004936488:4,038,985...4,061,087 		JBrowse link
methionine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mat1a methionine adenosyltransferase 1A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936716:126,628...142,986
Ensembl chrNW_004936716:126,574...143,155 		JBrowse link
threonine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gcat glycine C-acetyltransferase involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004936492:3,307,015...3,313,441
Ensembl chrNW_004936492:3,304,031...3,313,475 		JBrowse link
G LOC101961581 L-threonine 3-dehydrogenase, mitochondrial-like involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936675:3,093,246...3,110,076 JBrowse link
G LOC101975053 probable low-specificity L-threonine aldolase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936594:2,846,435...2,852,176 JBrowse link
G LOC101977937 probable low-specificity L-threonine aldolase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936594:2,839,027...2,843,333 JBrowse link
G Sds serine dehydratase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936668:3,208,810...3,213,465
Ensembl chrNW_004936668:3,206,458...3,215,617 		JBrowse link
G Sdsl serine dehydratase like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936668:3,222,894...3,232,736
Ensembl chrNW_004936668:3,222,904...3,232,626 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16121
    metabolic process 10243
      catabolic process 2417
        amino acid catabolic process 105
          alpha-amino acid catabolic process 91
            L-amino acid catabolic process 70
              aspartate family amino acid catabolic process 15
                L-lysine catabolic process + 3
                asparagine catabolic process + 1
                aspartate catabolic process + 4
                hydroxylysine catabolic process 0
                methionine catabolic process + 1
                threonine catabolic process + 6
Path 2
Term Annotations click to browse term
  biological_process 16121
    metabolic process 10243
      cellular metabolic process 8541
        organic acid metabolic process 890
          oxoacid metabolic process 873
            carboxylic acid metabolic process 862
              carboxylic acid catabolic process 235
                alpha-amino acid catabolic process 91
                  L-amino acid catabolic process 70
                    aspartate family amino acid catabolic process 15
                      L-lysine catabolic process + 3
                      asparagine catabolic process + 1
                      aspartate catabolic process + 4
                      hydroxylysine catabolic process 0
                      methionine catabolic process + 1
                      threonine catabolic process + 6
paths to the root