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ONTOLOGY REPORT - ANNOTATIONS

Term:aspartate family amino acid catabolic process
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Accession:GO:0009068 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of amino acids of the aspartate family, comprising asparagine, aspartate, lysine, methionine and threonine.
Synonyms:exact_synonym: aspartate family amino acid breakdown;   aspartate family amino acid catabolism;   aspartate family amino acid degradation


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asparagine catabolic process via L-aspartate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASRGL1 asparaginase and isoaspartyl peptidase 1 acts_upstream_of_or_within
involved_in		 ISO
IBA
IEA		 PMID:12753071 MGI
GO_Central
Ensembl		 PMID:12753071 GO_REF:0000033 GO_REF:0000107 RGD:1299508 NCBI chr 2:9,328,260...9,353,384
Ensembl chr 2:9,328,269...9,353,340 		JBrowse link
aspartate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DDO D-aspartate oxidase involved_in IBA GO_Central GO_REF:0000033 NCBI chr 1:76,391,112...76,417,147
Ensembl chr 1:76,391,116...76,417,301 		JBrowse link
G GOT1 glutamic-oxaloacetic transaminase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:110,608,422...110,635,825
Ensembl chr14:110,608,430...110,635,874 		JBrowse link
G GOT2 glutamic-oxaloacetic transaminase 2 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:20,407,203...20,431,849
Ensembl chr 6:20,407,200...20,432,067 		JBrowse link
L-lysine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AASS aminoadipate-semialdehyde synthase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10567240) Ensembl
MGI		 PMID:10567240 GO_REF:0000107 NCBI chr18:24,938,366...25,039,197
Ensembl chr18:24,974,754...25,039,195 		JBrowse link
L-lysine catabolic process to acetyl-CoA via L-pipecolate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC100515508 peroxisomal sarcosine oxidase involved_in IBA GO_Central GO_REF:0000033 NCBI chr12:45,306,327...45,319,938
Ensembl chr12:45,257,188...45,322,767 		JBrowse link
G PIPOX pipecolic acid and sarcosine oxidase involved_in IBA GO_Central GO_REF:0000033 NCBI chr12:45,256,806...45,270,755
Ensembl chr12:45,257,188...45,322,767 		JBrowse link
L-lysine catabolic process to acetyl-CoA via saccharopine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AASS aminoadipate-semialdehyde synthase involved_in IEA UniProt GO_REF:0000041 NCBI chr18:24,938,366...25,039,197
Ensembl chr18:24,974,754...25,039,195 		JBrowse link
G DLST dihydrolipoamide S-succinyltransferase involved_in IEA UniProt GO_REF:0000041 NCBI chr 7:98,091,161...98,111,267
Ensembl chr 7:98,091,124...98,111,572 		JBrowse link
L-threonine catabolic process to glycine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TDH L-threonine dehydrogenase involved_in IEA UniProt GO_REF:0000041 NCBI chr14:14,577,009...14,597,695 JBrowse link
methionine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MAT1A methionine adenosyltransferase 1A involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:82,109,405...82,126,487
Ensembl chr14:82,107,390...82,127,049 		JBrowse link
threonine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GCAT glycine C-acetyltransferase involved_in IEA InterPro GO_REF:0000002 NCBI chr 5:10,027,133...10,038,494
Ensembl chr 5:10,027,044...10,038,433 		JBrowse link
G TDH L-threonine dehydrogenase involved_in
acts_upstream_of_or_within		 ISS
ISO
IBA		 (PMID:21896756) UniProt
MGI
GO_Central		 PMID:21896756 GO_REF:0000024 GO_REF:0000033 NCBI chr14:14,577,009...14,597,695 JBrowse link
G THA1 threonine aldolase 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr12:3,728,742...3,734,209 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17634
    metabolic process 10706
      catabolic process 2514
        amino acid catabolic process 103
          alpha-amino acid catabolic process 90
            L-amino acid catabolic process 69
              aspartate family amino acid catabolic process 12
                L-lysine catabolic process + 4
                asparagine catabolic process + 1
                aspartate catabolic process + 3
                hydroxylysine catabolic process 0
                methionine catabolic process + 1
                threonine catabolic process + 3
Path 2
Term Annotations click to browse term
  biological_process 17634
    metabolic process 10706
      cellular metabolic process 8962
        organic acid metabolic process 896
          oxoacid metabolic process 887
            carboxylic acid metabolic process 871
              carboxylic acid catabolic process 236
                alpha-amino acid catabolic process 90
                  L-amino acid catabolic process 69
                    aspartate family amino acid catabolic process 12
                      L-lysine catabolic process + 4
                      asparagine catabolic process + 1
                      aspartate catabolic process + 3
                      hydroxylysine catabolic process 0
                      methionine catabolic process + 1
                      threonine catabolic process + 3
paths to the root