Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:aspartate family amino acid catabolic process
go back to main search page
Accession:GO:0009068 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of amino acids of the aspartate family, comprising asparagine, aspartate, lysine, methionine and threonine.
Synonyms:exact_synonym: aspartate family amino acid breakdown;   aspartate family amino acid catabolism;   aspartate family amino acid degradation

GViewer not supported for the selected species.

show annotations for term's descendants           Sort by:
asparagine catabolic process via L-aspartate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asrgl1 asparaginase and isoaspartyl peptidase 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 PMID:12753071 MGI
TreeGrafter		 PMID:12753071 GO_REF:0000118 RGD:1299508 NCBI chrNW_004624926:1,009,865...1,018,538
Ensembl chrNW_004624926:1,010,069...1,020,159 		JBrowse link
aspartate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddo D-aspartate oxidase involved_in ISO (PMID:9163533) UniProt PMID:9163533 NCBI chrNW_004624916:1,488,912...1,522,175
Ensembl chrNW_004624916:1,490,226...1,522,212 		JBrowse link
G Got1 glutamic-oxaloacetic transaminase 1 involved_in ISO (PMID:2241899) UniProt PMID:2241899 NCBI chrNW_004624737:11,114,818...11,153,209
Ensembl chrNW_004624737:11,115,066...11,153,211 		JBrowse link
G Got2 glutamic-oxaloacetic transaminase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624746:27,557,994...27,586,257
Ensembl chrNW_004624746:27,558,005...27,586,257 		JBrowse link
L-lysine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aass aminoadipate-semialdehyde synthase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10567240) Ensembl
MGI		 PMID:10567240 GO_REF:0000107 NCBI chrNW_004624783:13,831,220...13,904,806
Ensembl chrNW_004624783:13,831,150...13,902,082 		JBrowse link
L-lysine catabolic process to acetyl-CoA via L-pipecolate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pipox pipecolic acid and sarcosine oxidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624786:1,594,988...1,615,210
Ensembl chrNW_004624786:1,600,395...1,616,290 		JBrowse link
L-lysine catabolic process to acetyl-CoA via saccharopine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aass aminoadipate-semialdehyde synthase involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004624783:13,831,220...13,904,806
Ensembl chrNW_004624783:13,831,150...13,902,082 		JBrowse link
G Dlst dihydrolipoamide S-succinyltransferase involved_in IEA UniProt GO_REF:0000041 NCBI chrNW_004624734:26,802,902...26,824,632
Ensembl chrNW_004624734:26,803,344...26,825,272 		JBrowse link
methionine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mat1a methionine adenosyltransferase 1A involved_in ISO (PMID:10677294) UniProt PMID:10677294 NCBI chrNW_004624841:6,843,725...6,864,700
Ensembl chrNW_004624841:6,843,741...6,862,683 		JBrowse link
threonine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gcat glycine C-acetyltransferase involved_in IEA InterPro GO_REF:0000002 NCBI chrNW_004624752:10,095,979...10,103,442
Ensembl chrNW_004624752:10,089,827...10,103,515 		JBrowse link
G LOC101703542 probable low-specificity L-threonine aldolase 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624801:7,747,659...7,753,305 JBrowse link
G LOC101705643 L-threonine 3-dehydrogenase, mitochondrial-like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624758:25,035,628...25,051,431 JBrowse link
G Sds serine dehydratase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624747:19,124,706...19,131,757
Ensembl chrNW_004624747:19,123,927...19,132,307 		JBrowse link
G Sdsl serine dehydratase like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624747:19,110,425...19,131,161
Ensembl chrNW_004624747:19,109,587...19,116,244 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15225
    metabolic process 9677
      catabolic process 2298
        amino acid catabolic process 99
          alpha-amino acid catabolic process 87
            L-amino acid catabolic process 67
              aspartate family amino acid catabolic process 13
                L-lysine catabolic process + 3
                asparagine catabolic process + 1
                aspartate catabolic process + 3
                hydroxylysine catabolic process 0
                methionine catabolic process + 1
                threonine catabolic process + 5
Path 2
Term Annotations click to browse term
  biological_process 15225
    metabolic process 9677
      cellular metabolic process 8100
        organic acid metabolic process 812
          oxoacid metabolic process 804
            carboxylic acid metabolic process 792
              carboxylic acid catabolic process 224
                alpha-amino acid catabolic process 87
                  L-amino acid catabolic process 67
                    aspartate family amino acid catabolic process 13
                      L-lysine catabolic process + 3
                      asparagine catabolic process + 1
                      aspartate catabolic process + 3
                      hydroxylysine catabolic process 0
                      methionine catabolic process + 1
                      threonine catabolic process + 5
paths to the root