Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:aspartate family amino acid catabolic process
go back to main search page
Accession:GO:0009068 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of amino acids of the aspartate family, comprising asparagine, aspartate, lysine, methionine and threonine.
Synonyms:exact_synonym: aspartate family amino acid breakdown;   aspartate family amino acid catabolism;   aspartate family amino acid degradation


show annotations for term's descendants           Sort by:
asparagine catabolic process via L-aspartate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asrgl1 asparaginase like 1 involved_in
acts_upstream_of_or_within		 ISO
IBA		 MGI
GO_Central		 GO_REF:0000008 GO_REF:0000033 GO_REF:0000096 GO_REF:0000119 MGI:4417868 MGI:4834177 NCBI chr19:9,089,083...9,112,930
Ensembl chr19:9,087,232...9,113,000 		JBrowse link
aspartate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddo D-aspartate oxidase involved_in ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr10:40,505,933...40,557,847
Ensembl chr10:40,506,007...40,557,843 		JBrowse link
G Got1 glutamic-oxaloacetic transaminase 1, soluble involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr19:43,488,191...43,514,743
Ensembl chr19:43,488,191...43,513,044 		JBrowse link
G Got2 glutamatic-oxaloacetic transaminase 2, mitochondrial involved_in ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 8:96,590,761...96,615,029
Ensembl chr 8:96,590,762...96,615,175 		JBrowse link
L-lysine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aass aminoadipate-semialdehyde synthase acts_upstream_of_or_within IDA (PMID:10567240) MGI PMID:10567240 NCBI chr 6:23,072,172...23,132,985
Ensembl chr 6:23,072,172...23,132,985 		JBrowse link
L-lysine catabolic process to acetyl-CoA via L-pipecolate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pipox pipecolic acid oxidase involved_in ISS
ISO
IBA		 (MGI:1353685|PMID:10642506) UniProt
MGI
GO_Central		 PMID:10642506 GO_REF:0000033 GO_REF:0000119 MGI:1353685 MGI:4834177 NCBI chr11:77,771,440...77,784,698
Ensembl chr11:77,771,441...77,784,922 		JBrowse link
methionine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mat1a methionine adenosyltransferase 1A involved_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr14:40,826,969...40,846,385
Ensembl chr14:40,826,992...40,846,369 		JBrowse link
threonine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gcat glycine C-acetyltransferase (2-amino-3-ketobutyrate-coenzyme A ligase) involved_in IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr15:78,915,074...78,926,731
Ensembl chr15:78,915,074...78,922,553
Ensembl chr15:78,915,074...78,922,553 		JBrowse link
G Sdsl serine dehydratase-like involved_in IBA GO_Central GO_REF:0000033 NCBI chr 5:120,596,258...120,610,890
Ensembl chr 5:120,596,251...120,610,875
Ensembl chr 5:120,596,251...120,610,875 		JBrowse link
G Tdh L-threonine dehydrogenase involved_in
acts_upstream_of_or_within		 IDA
IBA		 (MGI:5905531|PMID:26492815)
(PMID:21896756)		 UniProt
GO_Central
MGI		 PMID:21896756 PMID:26492815 GO_REF:0000033 MGI:5905531 NCBI chr14:63,729,796...63,746,541
Ensembl chr14:63,729,796...63,746,541 		JBrowse link
G Tha1 threonine aldolase 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr11:117,758,775...117,764,352
Ensembl chr11:117,758,778...117,764,307 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28697
    metabolic process 11702
      catabolic process 2776
        amino acid catabolic process 97
          alpha-amino acid catabolic process 82
            L-amino acid catabolic process 62
              aspartate family amino acid catabolic process 11
                L-lysine catabolic process + 2
                asparagine catabolic process + 1
                aspartate catabolic process + 3
                hydroxylysine catabolic process 0
                methionine catabolic process + 1
                threonine catabolic process + 4
Path 2
Term Annotations click to browse term
  biological_process 28697
    metabolic process 11702
      cellular metabolic process 9818
        organic acid metabolic process 1037
          oxoacid metabolic process 1030
            carboxylic acid metabolic process 1008
              carboxylic acid catabolic process 240
                alpha-amino acid catabolic process 82
                  L-amino acid catabolic process 62
                    aspartate family amino acid catabolic process 11
                      L-lysine catabolic process + 2
                      asparagine catabolic process + 1
                      aspartate catabolic process + 3
                      hydroxylysine catabolic process 0
                      methionine catabolic process + 1
                      threonine catabolic process + 4
paths to the root