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ONTOLOGY REPORT - ANNOTATIONS

Term:aspartate family amino acid catabolic process
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Accession:GO:0009068 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of amino acids of the aspartate family, comprising asparagine, aspartate, lysine, methionine and threonine.
Synonyms:exact_synonym: aspartate family amino acid breakdown;   aspartate family amino acid catabolism;   aspartate family amino acid degradation


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asparagine catabolic process via L-aspartate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASRGL1 asparaginase and isoaspartyl peptidase 1 acts_upstream_of_or_within
involved_in		 ISO
IBA
IDA
ISS		 PMID:12753071
(PMID:19839645)		 MGI
GO_Central
UniProt		 PMID:12753071 PMID:19839645 GO_REF:0000024 GO_REF:0000033 RGD:1299508 NCBI chr11:62,337,448...62,401,431
Ensembl chr11:62,337,448...62,393,412 		JBrowse link
aspartate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DDO D-aspartate oxidase involved_in IDA
IBA		 (PMID:9163533) UniProt
GO_Central		 PMID:9163533 GO_REF:0000033 NCBI chr 6:110,388,321...110,415,575
Ensembl chr 6:110,391,771...110,415,575 		JBrowse link
G GOT1 glutamic-oxaloacetic transaminase 1 involved_in IDA (PMID:2241899) UniProt PMID:2241899 NCBI chr10:99,396,870...99,430,624
Ensembl chr10:99,396,870...99,430,624 		JBrowse link
G GOT2 glutamic-oxaloacetic transaminase 2 involved_in IDA
IBA		 (PMID:2567216) UniProt
GO_Central		 PMID:2567216 GO_REF:0000033 NCBI chr16:58,707,131...58,734,316
Ensembl chr16:58,707,131...58,734,342 		JBrowse link
L-lysine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AASS aminoadipate-semialdehyde synthase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10567240) Ensembl
MGI		 PMID:10567240 GO_REF:0000107 NCBI chr 7:122,073,549...122,144,249
Ensembl chr 7:122,064,583...122,144,308 		JBrowse link
L-lysine catabolic process to acetyl-CoA via L-pipecolate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PIPOX pipecolic acid and sarcosine oxidase involved_in IDA
IBA		 (PMID:10642506) UniProt
GO_Central		 PMID:10642506 GO_REF:0000033 NCBI chr17:29,043,141...29,057,216
Ensembl chr17:28,950,513...29,057,216 		JBrowse link
L-lysine catabolic process to acetyl-CoA via saccharopine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AADAT aminoadipate aminotransferase involved_in IEA UniProt GO_REF:0000041 NCBI chr 4:170,060,222...170,094,292
Ensembl chr 4:170,060,222...170,091,699 		JBrowse link
G AASS aminoadipate-semialdehyde synthase involved_in IEA UniProt GO_REF:0000041 NCBI chr 7:122,073,549...122,144,249
Ensembl chr 7:122,064,583...122,144,308 		JBrowse link
G DLST dihydrolipoamide S-succinyltransferase involved_in IEA UniProt GO_REF:0000041 NCBI chr14:74,881,916...74,903,743
Ensembl chr14:74,881,891...74,903,743 		JBrowse link
L-threonine catabolic process to glycine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RIDA reactive intermediate imine deaminase A homolog involved_in TAS Reactome Reactome:R-HSA-8849175 NCBI chr 8:98,102,344...98,117,171
Ensembl chr 8:98,102,344...98,117,171 		JBrowse link
methionine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MAT1A methionine adenosyltransferase 1A involved_in IMP (PMID:10677294) UniProt PMID:10677294 NCBI chr10:80,271,820...80,289,658
Ensembl chr10:80,271,820...80,289,658 		JBrowse link
threonine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GCAT glycine C-acetyltransferase involved_in IEA InterPro GO_REF:0000002 NCBI chr22:37,807,934...37,817,183
Ensembl chr22:37,807,905...37,817,176 		JBrowse link
G SDS serine dehydratase involved_in IBA GO_Central GO_REF:0000033 NCBI chr12:113,392,445...113,403,887
Ensembl chr12:113,392,445...113,426,301 		JBrowse link
G SDSL serine dehydratase like involved_in IBA GO_Central GO_REF:0000033 NCBI chr12:113,422,380...113,438,276
Ensembl chr12:113,422,380...113,438,276 		JBrowse link
G TDH L-threonine dehydrogenase (pseudogene) acts_upstream_of_or_within
involved_in		 ISO (PMID:21896756)
(MGI:5905531|PMID:26492815)		 MGI
UniProt		 PMID:21896756 PMID:26492815 MGI:5905531 NCBI chr 8:11,339,637...11,368,452
Ensembl chr 8:11,339,637...11,368,452
Ensembl chr 8:11,339,637...11,368,452 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19770
    metabolic process 13065
      catabolic process 2961
        amino acid catabolic process 120
          alpha-amino acid catabolic process 107
            L-amino acid catabolic process 83
              aspartate family amino acid catabolic process 14
                L-lysine catabolic process + 4
                asparagine catabolic process + 1
                aspartate catabolic process + 3
                hydroxylysine catabolic process 0
                methionine catabolic process + 1
                threonine catabolic process + 5
Path 2
Term Annotations click to browse term
  biological_process 19770
    metabolic process 13065
      cellular metabolic process 11174
        organic acid metabolic process 1053
          oxoacid metabolic process 1045
            carboxylic acid metabolic process 1022
              carboxylic acid catabolic process 272
                alpha-amino acid catabolic process 107
                  L-amino acid catabolic process 83
                    aspartate family amino acid catabolic process 14
                      L-lysine catabolic process + 4
                      asparagine catabolic process + 1
                      aspartate catabolic process + 3
                      hydroxylysine catabolic process 0
                      methionine catabolic process + 1
                      threonine catabolic process + 5
paths to the root