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ONTOLOGY REPORT - ANNOTATIONS

Term:aspartate family amino acid catabolic process
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Accession:GO:0009068 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of amino acids of the aspartate family, comprising asparagine, aspartate, lysine, methionine and threonine.
Synonyms:exact_synonym: aspartate family amino acid breakdown;   aspartate family amino acid catabolism;   aspartate family amino acid degradation

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asparagine catabolic process via L-aspartate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASRGL1 asparaginase and isoaspartyl peptidase 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 PMID:12753071 MGI
TreeGrafter
Ensembl		 PMID:12753071 GO_REF:0000107 GO_REF:0000118 RGD:1299508 NCBI chr 1:11,503,137...11,529,745
Ensembl chr 1:11,502,578...11,529,598 		JBrowse link
aspartate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DDO D-aspartate oxidase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr13:63,484,726...63,510,181 JBrowse link
G GOT1 glutamic-oxaloacetic transaminase 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:92,463,017...92,489,227
Ensembl chr 9:92,462,782...92,488,310 		JBrowse link
G GOT2 glutamic-oxaloacetic transaminase 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:44,645,721...44,670,917
Ensembl chr 5:44,645,602...44,670,918 		JBrowse link
L-lysine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AASS aminoadipate-semialdehyde synthase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10567240) Ensembl
MGI		 PMID:10567240 GO_REF:0000107 NCBI chr21:90,891,781...90,959,351
Ensembl chr21:90,892,023...90,959,343 		JBrowse link
L-lysine catabolic process to acetyl-CoA via L-pipecolate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PIPOX pipecolic acid and sarcosine oxidase involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr16:22,805,369...22,820,015
Ensembl chr16:22,805,740...22,820,537 		JBrowse link
L-lysine catabolic process to acetyl-CoA via saccharopine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AASS aminoadipate-semialdehyde synthase involved_in IEA UniProt GO_REF:0000041 NCBI chr21:90,891,781...90,959,351
Ensembl chr21:90,892,023...90,959,343 		JBrowse link
G DLST dihydrolipoamide S-succinyltransferase involved_in IEA UniProt GO_REF:0000041 NCBI chr24:52,098,270...52,121,560
Ensembl chr24:52,098,349...52,120,121 		JBrowse link
methionine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MAT1A methionine adenosyltransferase 1A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:51,540,162...51,558,076
Ensembl chr 9:51,540,162...51,558,576 		JBrowse link
threonine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GCAT glycine C-acetyltransferase involved_in IEA InterPro GO_REF:0000002 NCBI chr19:20,508,082...20,516,911
Ensembl chr19:20,508,506...20,516,732 		JBrowse link
G LOC103215330 L-threonine 3-dehydrogenase, mitochondrial involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 8:7,742,425...7,762,078 JBrowse link
G SDS serine dehydratase involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:108,643,198...108,654,927
Ensembl chr11:108,642,694...108,654,620 		JBrowse link
G SDSL serine dehydratase like involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:108,673,058...108,693,748
Ensembl chr11:108,673,075...108,693,815 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17080
    metabolic process 11163
      catabolic process 2516
        amino acid catabolic process 102
          alpha-amino acid catabolic process 90
            L-amino acid catabolic process 69
              aspartate family amino acid catabolic process 12
                L-lysine catabolic process + 3
                asparagine catabolic process + 1
                aspartate catabolic process + 3
                hydroxylysine catabolic process 0
                methionine catabolic process + 1
                threonine catabolic process + 4
Path 2
Term Annotations click to browse term
  biological_process 17080
    metabolic process 11163
      cellular metabolic process 9345
        organic acid metabolic process 913
          oxoacid metabolic process 906
            carboxylic acid metabolic process 890
              carboxylic acid catabolic process 239
                alpha-amino acid catabolic process 90
                  L-amino acid catabolic process 69
                    aspartate family amino acid catabolic process 12
                      L-lysine catabolic process + 3
                      asparagine catabolic process + 1
                      aspartate catabolic process + 3
                      hydroxylysine catabolic process 0
                      methionine catabolic process + 1
                      threonine catabolic process + 4
paths to the root