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ONTOLOGY REPORT - ANNOTATIONS

Term:aspartate family amino acid metabolic process
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Accession:GO:0009066 term browser browse the term
Definition:The chemical reactions and pathways involving amino acids of the aspartate family, comprising asparagine, aspartate, lysine, methionine and threonine.
Synonyms:exact_synonym: aspartate family amino acid metabolism
 xref: Reactome:R-HSA-8963693 "Aspartate and asparagine metabolism"


show annotations for term's descendants           Sort by:
aspartate family amino acid metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aspg asparaginase involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr 6:136,997,832...137,017,417
Ensembl chr 6:136,998,023...137,017,417 		JBrowse link
asparagine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asns asparagine synthetase (glutamine-hydrolyzing) involved_in
acts_upstream_of_or_within 		IDA
IEA
IBA
ISO 		GO_REF:0000002
GO_REF:0000043
GO_REF:0000033
(PMID:2573597) 		InterPro
UniProt
GO_Central
RGD		 PMID:2573597 PMID:2887559 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043, RGD:2316002 NCBI chr 4:36,752,061...36,769,970
Ensembl chr 4:36,751,802...36,776,050 		JBrowse link
G Asnsd1 asparagine synthetase domain containing 1 involved_in IEA GO_REF:0000043
GO_REF:0000002 		UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chr 9:55,618,799...55,631,064
Ensembl chr 9:55,618,799...55,631,064 		JBrowse link
asparagine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aspg asparaginase involved_in IDA PMID:9575212 UniProt PMID:9575212 RGD:1299414 NCBI chr 6:136,997,832...137,017,417
Ensembl chr 6:136,998,023...137,017,417 		JBrowse link
G Nit2 nitrilase family, member 2 involved_in ISO
IBA
IEA 		(PMID:22674578)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:22674578 GO_REF:0000033 GO_REF:0000107 NCBI chr11:56,832,957...56,844,142
Ensembl chr11:56,832,558...56,844,141 		JBrowse link
aspartate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Got1 glutamic-oxaloacetic transaminase 1 involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
(PMID:4193185) 		GO_Central
Ensembl
RGD		 PMID:4193185 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:252,306,541...252,337,622
Ensembl chr 1:252,284,434...252,329,871 		JBrowse link
G Got1l1 glutamic-oxaloacetic transaminase 1-like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:71,563,562...71,576,446
Ensembl chr16:71,563,534...71,570,468 		JBrowse link
G Got2 glutamic-oxaloacetic transaminase 2 acts_upstream_of_or_within ISO (PMID:4193185) RGD PMID:4193185 NCBI chr19:9,180,428...9,206,113
Ensembl chr19:9,180,431...9,206,111 		JBrowse link
aspartate metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adss1 adenylosuccinate synthase 1 IDA RGD PMID:3759987 RGD:5135303 NCBI chr 6:137,500,549...137,523,087
Ensembl chr 6:137,501,001...137,523,086 		JBrowse link
G Adss2 adenylosuccinate synthase 2 IDA RGD PMID:71897 RGD:5135533 NCBI chr13:92,301,302...92,331,638
Ensembl chr13:92,301,302...92,331,638 		JBrowse link
G Aspa aspartoacylase involved_in ISO MGI:2447776 (PMID:28077719) RGD PMID:28077719 NCBI chr10:58,390,204...58,443,790
Ensembl chr10:58,379,410...58,443,769 		JBrowse link
G Ass1 argininosuccinate synthase 1 involved_in ISO
IEA 		(PMID:7977368)
GO_REF:0000107 		RGD
Ensembl		 PMID:7977368 GO_REF:0000107 NCBI chr 3:35,144,765...35,194,632
Ensembl chr 3:35,144,999...35,194,627 		JBrowse link
G Ddo D-aspartate oxidase acts_upstream_of_or_within ISO
IEA 		MGI:3625623 (PMID:16525061)
GO_REF:0000107 		RGD
Ensembl		 PMID:16525061 GO_REF:0000107 NCBI chr20:45,673,486...45,693,056
Ensembl chr20:45,675,532...45,715,758 		JBrowse link
G ENSRNOG00000064101 involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117
G Got1 glutamic-oxaloacetic transaminase 1 involved_in IDA
IEA
ISS 		GO_REF:0000117
GO_REF:0000024 		UniProt
RGD		 PMID:2837211 GO_REF:0000024 GO_REF:0000117, RGD:2289377 NCBI chr 1:252,306,541...252,337,622
Ensembl chr 1:252,284,434...252,329,871 		JBrowse link
G Got2 glutamic-oxaloacetic transaminase 2 involved_in IMP
IEA
ISS 		GO_REF:0000117
GO_REF:0000024 		UniProt
RGD		 PMID:12686151 GO_REF:0000024 GO_REF:0000117, RGD:2289396 NCBI chr19:9,180,428...9,206,113
Ensembl chr19:9,180,431...9,206,111 		JBrowse link
G Nat8l N-acetyltransferase 8-like involved_in ISO MGI:87914 (PMID:28077719) RGD PMID:28077719 NCBI chr14:80,980,629...80,987,264
Ensembl chr14:80,980,629...80,987,463 		JBrowse link
G Slc38a8 solute carrier family 38, member 8 acts_upstream_of_or_within ISO
IEA 		(PMID:36735752)
GO_REF:0000107 		RGD
Ensembl		 PMID:36735752 GO_REF:0000107 NCBI chr19:64,432,524...64,468,852
Ensembl chr19:64,437,013...64,463,960 		JBrowse link
hydroxylysine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plod2 procollagen lysine, 2-oxoglutarate 5-dioxygenase 2 involved_in ISO
IEA 		(PMID:10934207)
GO_REF:0000107 		RGD
Ensembl		 PMID:10934207 GO_REF:0000107 NCBI chr 8:101,964,318...102,047,022
Ensembl chr 8:101,964,318...102,047,022 		JBrowse link
G Plod3 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 involved_in IEA
ISO 		GO_REF:0000107
(PMID:16447251) 		Ensembl
RGD		 PMID:16447251 GO_REF:0000107 NCBI chr12:25,313,070...25,323,631
Ensembl chr12:25,313,072...25,323,631 		JBrowse link
L-asparagine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asns asparagine synthetase (glutamine-hydrolyzing) involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 4:36,752,061...36,769,970
Ensembl chr 4:36,751,802...36,776,050 		JBrowse link
L-asparagine catabolic process via L-aspartate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asrgl1 asparaginase and isoaspartyl peptidase 1 involved_in
acts_upstream_of_or_within 		ISO
IBA
IDA 		(PMID:19839645)
GO_REF:0000033
PMID:12753071 		RGD
GO_Central		 PMID:19839645 PMID:12753071 PMID:12753071 GO_REF:0000033, RGD:1299508, RGD:1299508 NCBI chr 1:215,436,180...215,456,188
Ensembl chr 1:215,435,218...215,456,198 		JBrowse link
L-asparagine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf4 activating transcription factor 4 involved_in ISO
IEA 		(PMID:11960987)
GO_REF:0000107 		RGD
Ensembl		 PMID:11960987 GO_REF:0000107 NCBI chr 7:113,684,681...113,686,739
Ensembl chr 7:113,684,681...113,686,739 		JBrowse link
L-aspartate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddo D-aspartate oxidase involved_in ISO (PMID:9163533) RGD PMID:9163533 NCBI chr20:45,673,486...45,693,056
Ensembl chr20:45,675,532...45,715,758 		JBrowse link
G ENSRNOG00000064101 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033
G Got1 glutamic-oxaloacetic transaminase 1 involved_in ISO
IEA 		(PMID:2241899)
GO_REF:0000107 		RGD
Ensembl		 PMID:2241899 GO_REF:0000107 NCBI chr 1:252,306,541...252,337,622
Ensembl chr 1:252,284,434...252,329,871 		JBrowse link
G Got2 glutamic-oxaloacetic transaminase 2 involved_in ISO
IBA 		(PMID:2567216)
GO_REF:0000033 		RGD
GO_Central		 PMID:2567216 GO_REF:0000033 NCBI chr19:9,180,428...9,206,113
Ensembl chr19:9,180,431...9,206,111 		JBrowse link
G Got2-ps6 glutamic-oxaloacetic transaminase 2, pseudogene 6 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:60,551,686...60,552,959
Ensembl chr  X:64,561,208...64,562,481 		JBrowse link
L-glutamate catabolic process to aspartate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Got1 glutamic-oxaloacetic transaminase 1 acts_upstream_of_or_within ISO
IEA 		(PMID:4193185)
GO_REF:0000107 		RGD
Ensembl		 PMID:4193185 GO_REF:0000107 NCBI chr 1:252,306,541...252,337,622
Ensembl chr 1:252,284,434...252,329,871 		JBrowse link
G Got2 glutamic-oxaloacetic transaminase 2 acts_upstream_of_or_within ISO (PMID:4193185) RGD PMID:4193185 NCBI chr19:9,180,428...9,206,113
Ensembl chr19:9,180,431...9,206,111 		JBrowse link
L-isoleucine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acadsb acyl-CoA dehydrogenase, short/branched chain involved_in ISO
ISS
IEA 		(PMID:11013134)
GO_REF:0000024
GO_REF:0000041
GO_REF:0000107 		RGD
UniProt
Ensembl		 PMID:11013134 GO_REF:0000024 GO_REF:0000041 GO_REF:0000107 NCBI chr 1:195,619,088...195,660,564
Ensembl chr 1:195,619,038...195,660,561 		JBrowse link
G Acat1 acetyl-CoA acetyltransferase 1 involved_in ISO
IEA 		(PMID:1979337), (PMID:8103405)
GO_REF:0000107 		RGD
Ensembl		 PMID:1979337 PMID:8103405 GO_REF:0000107 NCBI chr 8:62,876,003...62,905,080
Ensembl chr 8:62,876,003...62,905,042 		JBrowse link
G Bcat2 branched chain amino acid transaminase 2 involved_in
acts_upstream_of_or_within 		IDA
IEA
ISO 		GO_REF:0000117
GO_REF:0000107
MGI:3772355 (PMID:17767905) 		UniProt
Ensembl
RGD		 PMID:17767905 PMID:11733007 GO_REF:0000107 GO_REF:0000117, RGD:1582175 NCBI chr 1:105,175,157...105,196,474
Ensembl chr 1:105,176,977...105,196,463 		JBrowse link
G Bckdk branched chain ketoacid dehydrogenase kinase IMP RGD PMID:27472223 RGD:39131293 NCBI chr 1:191,945,809...191,950,480
Ensembl chr 1:191,946,471...191,953,453 		JBrowse link
G Hsd17b10 hydroxysteroid (17-beta) dehydrogenase 10 involved_in ISO
IEA
ISS 		(PMID:18996107), (PMID:19706438)
GO_REF:0000107
GO_REF:0000041
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:18996107 PMID:19706438 GO_REF:0000024 GO_REF:0000041 GO_REF:0000107 NCBI chr  X:24,568,551...24,571,012
Ensembl chr  X:24,568,551...24,574,681 		JBrowse link
L-lysine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aass aminoadipate-semialdehyde synthase acts_upstream_of_or_within ISO (PMID:10567240) RGD PMID:10567240 NCBI chr 4:52,572,146...52,628,811
Ensembl chr 4:52,572,147...52,657,600 		JBrowse link
L-lysine catabolic process to acetyl-CoA via L-pipecolate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pipox pipecolic acid and sarcosine oxidase involved_in ISO
IEA
IBA 		(PMID:10642506)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:10642506 GO_REF:0000033 GO_REF:0000107 NCBI chr10:63,267,946...63,281,556
Ensembl chr10:63,267,972...63,282,273 		JBrowse link
L-lysine catabolic process to acetyl-CoA via saccharopine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aadat aminoadipate aminotransferase involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr16:34,520,236...34,566,388
Ensembl chr16:34,520,238...34,566,540 		JBrowse link
G Aass aminoadipate-semialdehyde synthase involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 4:52,572,146...52,628,811
Ensembl chr 4:52,572,147...52,657,600 		JBrowse link
G Dlst dihydrolipoamide S-succinyltransferase involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 6:110,489,576...110,512,841
Ensembl chr 6:110,489,392...110,514,357 		JBrowse link
L-methionine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mat1a methionine adenosyltransferase 1A involved_in ISO
ISS 		(PMID:10677294)
GO_REF:0000024 		RGD
UniProt		 PMID:10677294 GO_REF:0000024 NCBI chr16:17,017,168...17,035,368
Ensembl chr16:17,016,030...17,035,367 		JBrowse link
L-methionine salvage term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhmt betaine-homocysteine S-methyltransferase involved_in ISO
IBA
IEA 		(PMID:18230605)
GO_REF:0000033
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:18230605 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:26,594,852...26,614,429
Ensembl chr 2:26,594,854...26,614,715 		JBrowse link
G Bhmt2 betaine-homocysteine S-methyltransferase 2 involved_in ISO
IEA
IBA 		(PMID:18230605)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:18230605 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:26,630,502...26,647,450
Ensembl chr 2:26,630,510...26,651,326 		JBrowse link
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr17:62,911,705...62,996,544
Ensembl chr17:62,911,771...62,996,541 		JBrowse link
L-methionine salvage from methylthioadenosine term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adi1 acireductone dioxygenase 1 involved_in ISO
IEA
ISS 		(PMID:15938715)
GO_REF:0000107
GO_REF:0000002
GO_REF:0000104
GO_REF:0000041
GO_REF:0000024 		RGD
Ensembl
InterPro
UniProt		 PMID:15938715 GO_REF:0000002 GO_REF:0000024 GO_REF:0000041 GO_REF:0000104 GO_REF:0000107 NCBI chr 6:51,035,267...51,042,229
Ensembl chr 6:51,034,931...51,042,855 		JBrowse link
G Apip APAF1 interacting protein involved_in ISO
IEA
IBA 		(PMID:22837397), (PMID:23285211)
GO_REF:0000107
GO_REF:0000002
GO_REF:0000104
GO_REF:0000041
GO_REF:0000033 		RGD
Ensembl
InterPro
UniProt
GO_Central		 PMID:22837397 PMID:23285211 GO_REF:0000002 GO_REF:0000033 GO_REF:0000041 GO_REF:0000104 GO_REF:0000107 NCBI chr 3:109,886,919...109,913,295
Ensembl chr 3:109,886,953...109,915,862 		JBrowse link
G Enoph1 enolase-phosphatase 1 involved_in ISO
IEA
IBA
ISS 		(PMID:15843022)
GO_REF:0000002
GO_REF:0000104
GO_REF:0000041
GO_REF:0000033
GO_REF:0000024 		RGD
InterPro
UniProt
GO_Central		 PMID:15843022 GO_REF:0000002 GO_REF:0000024 GO_REF:0000033 GO_REF:0000041 GO_REF:0000104 NCBI chr14:9,835,626...9,862,051
Ensembl chr14:9,835,627...9,873,668 		JBrowse link
G Mri1 methylthioribose-1-phosphate isomerase 1 involved_in IEA
IBA 		GO_REF:0000041
GO_REF:0000104
GO_REF:0000033 		UniProt
GO_Central		 GO_REF:0000033 GO_REF:0000041 GO_REF:0000104 NCBI chr19:40,812,114...40,819,846
Ensembl chr19:40,812,094...40,822,607 		JBrowse link
G Mtap methylthioadenosine phosphorylase involved_in IBA
IEA 		GO_REF:0000033
GO_REF:0000104
GO_REF:0000041 		GO_Central
UniProt		 GO_REF:0000033 GO_REF:0000041 GO_REF:0000104 NCBI chr 5:108,990,270...109,036,494
Ensembl chr 5:108,988,830...109,055,214 		JBrowse link
L-threonine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gcat glycine C-acetyltransferase involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 7:112,475,572...112,481,920
Ensembl chr 7:112,475,496...112,482,664 		JBrowse link
G Tdh L-threonine dehydrogenase involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
(PMID:26492815)
(PMID:21896756) 		GO_Central
Ensembl
RGD		 PMID:21896756 PMID:26492815 GO_REF:0000033 GO_REF:0000107 NCBI chr15:41,915,766...41,929,307
Ensembl chr15:41,915,766...41,929,307 		JBrowse link
G Tha1 threonine aldolase 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:103,094,681...103,100,169
Ensembl chr10:103,593,098...103,604,792 		JBrowse link
lysine biosynthetic process via aminoadipic acid term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aasdhppt aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:9,731,592...9,748,934
Ensembl chr 8:9,738,172...9,748,953 		JBrowse link
G Aass aminoadipate-semialdehyde synthase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:52,572,146...52,628,811
Ensembl chr 4:52,572,147...52,657,600 		JBrowse link
methionine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adi1 acireductone dioxygenase 1 involved_in IEA GO_REF:0000043
GO_REF:0000117 		UniProt GO_REF:0000043 GO_REF:0000117 NCBI chr 6:51,035,267...51,042,229
Ensembl chr 6:51,034,931...51,042,855 		JBrowse link
G Apip APAF1 interacting protein involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:109,886,919...109,913,295
Ensembl chr 3:109,886,953...109,915,862 		JBrowse link
G Bhmt betaine-homocysteine S-methyltransferase involved_in
acts_upstream_of_or_within 		IDA
IEA
ISO 		GO_REF:0000002
GO_REF:0000117
(PMID:15217352) 		InterPro
UniProt
RGD		 PMID:15217352 PMID:15845641 GO_REF:0000002 GO_REF:0000117, RGD:1359026 NCBI chr 2:26,594,852...26,614,429
Ensembl chr 2:26,594,854...26,614,715 		JBrowse link
G Bhmt2 betaine-homocysteine S-methyltransferase 2 involved_in IEA GO_REF:0000117
GO_REF:0000002 		UniProt
InterPro		 GO_REF:0000002 GO_REF:0000117 NCBI chr 2:26,630,502...26,647,450
Ensembl chr 2:26,630,510...26,651,326 		JBrowse link
G Enoph1 enolase-phosphatase 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:9,835,626...9,862,051
Ensembl chr14:9,835,627...9,873,668 		JBrowse link
G Mri1 methylthioribose-1-phosphate isomerase 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr19:40,812,114...40,819,846
Ensembl chr19:40,812,094...40,822,607 		JBrowse link
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 involved_in
acts_upstream_of 		IEA
ISO 		GO_REF:0000043
(PMID:25633902) 		UniProt
RGD		 PMID:25633902 GO_REF:0000043 NCBI chr 6:100,713,510...100,781,013
Ensembl chr 6:100,713,681...100,781,957 		JBrowse link
G Mthfd1-ps1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1, pseudogene 1 involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 3:116,195,791...116,198,973 JBrowse link
G Mthfd2l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr14:17,374,139...17,455,508
Ensembl chr14:17,374,144...17,454,322 		JBrowse link
G Mthfr methylenetetrahydrofolate reductase acts_upstream_of_or_within
involved_in 		ISO
IBA 		MGI:2385823 (PMID:15217352)
GO_REF:0000033 		RGD
GO_Central		 PMID:15217352 GO_REF:0000033 NCBI chr 5:163,748,346...163,768,141
Ensembl chr 5:163,748,321...163,768,105 		JBrowse link
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase involved_in
acts_upstream_of_or_within 		IDA
IEA
IBA
ISO 		GO_REF:0000107
GO_REF:0000002
GO_REF:0000043
GO_REF:0000033
PMID:20424322
MGI:2180496 (PMID:11158293)
(PMID:23825108) 		Ensembl
InterPro
UniProt
GO_Central
RGD		 PMID:11158293 PMID:23825108 PMID:15845641 PMID:20424322 PMID:11730351 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 GO_REF:0000107, RGD:1359026, RGD:10054082, RGD:1601423 NCBI chr17:62,911,705...62,996,544
Ensembl chr17:62,911,771...62,996,541 		JBrowse link
G Mtrr 5-methyltetrahydrofolate-homocysteine methyltransferase reductase involved_in ISO
IEA
IBA 		(PMID:11466310)
GO_REF:0000117
GO_REF:0000033
GO_REF:0000043
(PMID:17369066) 		RGD
UniProt
GO_Central		 PMID:11466310 PMID:17369066 GO_REF:0000033 GO_REF:0000043 GO_REF:0000117 NCBI chr 1:36,695,376...36,727,341
Ensembl chr 1:36,695,460...36,727,807 		JBrowse link
methionine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adi1 acireductone dioxygenase 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:51,035,267...51,042,229
Ensembl chr 6:51,034,931...51,042,855 		JBrowse link
G Gnmt glycine N-methyltransferase acts_upstream_of_or_within ISO MGI:3842652 (PMID:17937387) RGD PMID:17937387 NCBI chr 9:21,752,235...21,756,368
Ensembl chr 9:21,752,266...21,755,692 		JBrowse link
G Mthfd1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 involved_in
acts_upstream_of 		IEA
ISO 		GO_REF:0000117
(PMID:23190757) 		UniProt
RGD		 PMID:23190757 GO_REF:0000117 NCBI chr 6:100,713,510...100,781,013
Ensembl chr 6:100,713,681...100,781,957 		JBrowse link
G Mthfr methylenetetrahydrofolate reductase involved_in ISO
IEA 		UniProtKB:P53128 (PMID:10551815)
GO_REF:0000117
GO_REF:0000002
GO_REF:0000107 		RGD
UniProt
InterPro
Ensembl		 PMID:10551815 GO_REF:0000002 GO_REF:0000107 GO_REF:0000117 NCBI chr 5:163,748,346...163,768,141
Ensembl chr 5:163,748,321...163,768,105 		JBrowse link
G Mtr 5-methyltetrahydrofolate-homocysteine methyltransferase IMP RGD PMID:21121936 RGD:7207080 NCBI chr17:62,911,705...62,996,544
Ensembl chr17:62,911,771...62,996,541 		JBrowse link
threonine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Thnsl2 threonine synthase-like 2 NOT|acts_upstream_of_or_within ISO (PMID:17034760) RGD PMID:17034760 NCBI chr 4:104,671,305...104,691,084
Ensembl chr 4:104,670,925...104,691,959 		JBrowse link
threonine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phgdh phosphoglycerate dehydrogenase acts_upstream_of_or_within ISO
IEA 		MGI:3769591 (PMID:19114063)
GO_REF:0000107 		RGD
Ensembl		 PMID:19114063 GO_REF:0000107 NCBI chr 2:188,595,700...188,624,789
Ensembl chr 2:188,595,700...188,624,789 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20668
    cellular process 19605
      metabolic process 12252
        primary metabolic process 10845
          amino acid metabolic process 312
            proteinogenic amino acid metabolic process 186
              aspartate family amino acid metabolic process 50
                L-lysine metabolic process + 4
                asparagine metabolic process + 6
                aspartate family amino acid biosynthetic process + 23
                aspartate family amino acid catabolic process + 19
                aspartate metabolic process + 12
                hydroxylysine metabolic process + 2
                methionine metabolic process + 15
                threonine metabolic process + 5
Path 2
Term Annotations click to browse term
  biological_process 20668
    cellular process 19605
      metabolic process 12252
        small molecule metabolic process 1977
          organic acid metabolic process 1082
            oxoacid metabolic process 1068
              carboxylic acid metabolic process 1053
                alpha-amino acid metabolic process 229
                  L-amino acid metabolic process 196
                    aspartate family amino acid metabolic process 50
                      L-lysine metabolic process + 4
                      asparagine metabolic process + 6
                      aspartate family amino acid biosynthetic process + 23
                      aspartate family amino acid catabolic process + 19
                      aspartate metabolic process + 12
                      hydroxylysine metabolic process + 2
                      methionine metabolic process + 15
                      threonine metabolic process + 5
paths to the root