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ONTOLOGY REPORT - ANNOTATIONS


Term:cellular amino acid catabolic process
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Accession:GO:0009063 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of amino acids, organic acids containing one or more amino substituents.
Synonyms:exact_synonym: amino acid catabolic process;   cellular amino acid breakdown;   cellular amino acid catabolism;   cellular amino acid degradation


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cellular amino acid catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENOSF1 enolase superfamily member 1 IEA InterPro GO_REF:0000002 NCBI chr 6:105,613,211...105,642,533
Ensembl chr 6:105,613,273...105,645,113
JBrowse link
G IL4I1 interleukin 4 induced 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:54,906,401...54,945,840
Ensembl chr 6:54,906,401...54,946,202
JBrowse link
4-hydroxyproline catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HOGA1 4-hydroxy-2-oxoglutarate aldolase 1 IEA Ensembl GO_REF:0000107 NCBI chr14:108,958,812...108,986,373
Ensembl chr14:108,959,134...108,986,726
JBrowse link
arginine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DDAH1 dimethylarginine dimethylaminohydrolase 1 IEA Ensembl
InterPro
GO_REF:0000002, GO_REF:0000107 NCBI chr 4:130,485,305...130,617,534
Ensembl chr 4:130,483,878...130,617,531
JBrowse link
G DDAH2 dimethylarginine dimethylaminohydrolase 2 IEA InterPro GO_REF:0000002 NCBI chr 7:23,838,993...23,842,514
Ensembl chr 7:23,838,993...23,842,516
JBrowse link
G FAH fumarylacetoacetate hydrolase IEA Ensembl GO_REF:0000107 NCBI chr 7:49,047,833...49,087,790
Ensembl chr 7:49,047,983...49,105,598
JBrowse link
G NOS1 nitric oxide synthase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:35,112,898...35,299,297
Ensembl chr14:35,113,184...35,295,972
JBrowse link
G NOS2 nitric oxide synthase 2 IEA Ensembl GO_REF:0000107 NCBI chr12:44,174,944...44,219,875
Ensembl chr12:44,174,944...44,327,111
JBrowse link
G NOS3 nitric oxide synthase 3 IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr18:6,209,218...6,228,912
Ensembl chr18:6,209,156...6,228,938
JBrowse link
arginine catabolic process to glutamate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OAT ornithine aminotransferase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:133,808,193...133,830,517 JBrowse link
arginine catabolic process to ornithine term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARG1 arginase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:32,006,035...32,028,983
Ensembl chr 1:32,006,038...32,028,986
JBrowse link
G ARG2 arginase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:91,343,987...91,385,911
Ensembl chr 7:91,343,987...91,385,911
JBrowse link
arginine catabolic process to proline via ornithine term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OAT ornithine aminotransferase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:133,808,193...133,830,517 JBrowse link
asparagine catabolic process via L-aspartate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASRGL1 asparaginase and isoaspartyl peptidase 1 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 2:9,328,260...9,353,384
Ensembl chr 2:9,328,269...9,353,340
JBrowse link
aspartate catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DDO D-aspartate oxidase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:76,391,112...76,417,147
Ensembl chr 1:76,390,493...76,417,301
JBrowse link
G GOT1 glutamic-oxaloacetic transaminase 1 IEA Ensembl GO_REF:0000107 NCBI chr14:110,608,422...110,635,825
Ensembl chr14:110,608,430...110,635,874
JBrowse link
G GOT2 glutamic-oxaloacetic transaminase 2 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 6:20,407,203...20,431,849
Ensembl chr 6:20,407,198...20,432,068
JBrowse link
beta-alanine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH6A1 aldehyde dehydrogenase 6 family member A1 ISO RGD PMID:2768248 RGD:1599052 NCBI chr 7:97,360,583...97,381,885
Ensembl chr 7:97,357,952...97,381,841
JBrowse link
branched-chain amino acid catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCAT1 branched chain amino acid transaminase 1 ISO (MGI:MGI:3027291|PMID:14755340) MGI PMID:14755340 MGI:MGI:3027291 NCBI chr 5:48,814,212...48,925,632
Ensembl chr 5:48,814,300...48,925,976
JBrowse link
G BCAT2 branched chain amino acid transaminase 2 ISO (MGI:MGI:3027291|PMID:14755340) RGD
MGI
PMID:11733007, PMID:14755340 MGI:MGI:3027291, RGD:1582175 NCBI chr 6:54,107,682...54,123,595
Ensembl chr 6:54,107,681...54,143,602
JBrowse link
G BCKDHA branched chain keto acid dehydrogenase E1 subunit alpha IEA
IBA
(PMID:21873635) InterPro
GO_Central
PMID:21873635 GO_REF:0000002 NCBI chr 6:49,381,995...49,398,745 JBrowse link
G BCKDHB branched chain keto acid dehydrogenase E1 subunit beta IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr 1:85,755,819...86,017,661
Ensembl chr 1:85,715,203...86,017,600
JBrowse link
G BCKDK branched chain keto acid dehydrogenase kinase ISO PMID:1377677 HGNC PMID:1377677 RGD:68712 NCBI chr 3:17,375,628...17,380,925
Ensembl chr 3:17,375,352...17,402,204
JBrowse link
G IVD isovaleryl-CoA dehydrogenase ISO (PMID:7640268) UniProt PMID:7640268 NCBI chr 1:130,896,488...130,910,582
Ensembl chr 1:130,893,983...130,940,350
JBrowse link
G SLC25A44 solute carrier family 25 member 44 ISO (MGI:MGI:6359503|PMID:31435015)
(PMID:31435015)
UniProt PMID:31435015 MGI:MGI:6359503 NCBI chr 4:93,837,004...93,857,154
Ensembl chr 4:93,810,504...93,857,158
JBrowse link
G TMEM91 transmembrane protein 91 IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr 6:49,366,073...49,372,419 JBrowse link
D-alanine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DAO D-amino acid oxidase IEA Ensembl GO_REF:0000107 NCBI chr14:41,931,549...41,950,628
Ensembl chr14:41,929,215...41,950,633
JBrowse link
D-amino acid catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DDO D-aspartate oxidase IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr 1:76,391,112...76,417,147
Ensembl chr 1:76,390,493...76,417,301
JBrowse link
D-serine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DAO D-amino acid oxidase IEA Ensembl GO_REF:0000107 NCBI chr14:41,931,549...41,950,628
Ensembl chr14:41,929,215...41,950,633
JBrowse link
gamma-aminobutyric acid catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABAT 4-aminobutyrate aminotransferase IMP
IBA
(PMID:11561735)
(PMID:21873635)
UniProt
GO_Central
PMID:11561735, PMID:21873635 NCBI chr 3:33,913,068...33,960,804
Ensembl chr 3:33,908,965...34,015,469
JBrowse link
G ALDH5A1 aldehyde dehydrogenase 5 family member A1 IEA UniProt GO_REF:0000041 NCBI chr 7:19,351,485...19,375,515
Ensembl chr 7:19,351,361...19,379,100
JBrowse link
glutamate catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GLUD1 glutamate dehydrogenase 1 ISO (PMID:11032875), (PMID:6121377) UniProtKB PMID:6121377, PMID:11032875 NCBI chr14:87,968,850...88,005,375
Ensembl chr14:87,968,850...88,005,550
JBrowse link
glutamate catabolic process to 2-oxoglutarate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GOT1 glutamic-oxaloacetic transaminase 1 IEA Ensembl GO_REF:0000107 NCBI chr14:110,608,422...110,635,825
Ensembl chr14:110,608,430...110,635,874
JBrowse link
G GOT2 glutamic-oxaloacetic transaminase 2 IEA Ensembl GO_REF:0000107 NCBI chr 6:20,407,203...20,431,849
Ensembl chr 6:20,407,198...20,432,068
JBrowse link
glutamate catabolic process to aspartate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GOT1 glutamic-oxaloacetic transaminase 1 IEA Ensembl GO_REF:0000107 NCBI chr14:110,608,422...110,635,825
Ensembl chr14:110,608,430...110,635,874
JBrowse link
G GOT2 glutamic-oxaloacetic transaminase 2 IEA Ensembl GO_REF:0000107 NCBI chr 6:20,407,203...20,431,849
Ensembl chr 6:20,407,198...20,432,068
JBrowse link
glutamate catabolic process via 2-oxoglutarate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADHFE1 alcohol dehydrogenase iron containing 1 ISO (PMID:16435184) UniProtKB PMID:16435184 NCBI chr 4:68,251,970...68,285,436 JBrowse link
glutamate decarboxylation to succinate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GAD2 glutamate decarboxylase 2 ISO RGD PMID:8999827 RGD:1625237 NCBI chr10:49,316,682...49,391,013
Ensembl chr10:49,313,641...49,390,926
JBrowse link
glutamine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GLS glutaminase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:95,513,414...95,606,029
Ensembl chr15:95,513,380...95,598,311
JBrowse link
G PPAT phosphoribosyl pyrophosphate amidotransferase ISO RGD PMID:8463258 RGD:633710 NCBI chr 8:55,652,194...55,701,077
Ensembl chr 8:55,652,201...55,701,077
JBrowse link
glycine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMT aminomethyltransferase IEA InterPro GO_REF:0000002 NCBI chr13:31,995,600...32,002,514
Ensembl chr13:31,995,595...32,002,470
JBrowse link
G GLDC glycine decarboxylase IEA InterPro GO_REF:0000002 NCBI chr 1:215,608,854...215,715,062
Ensembl chr 1:215,608,849...215,715,061
JBrowse link
glycine decarboxylation via glycine cleavage system term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMT aminomethyltransferase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr13:31,995,600...32,002,514
Ensembl chr13:31,995,595...32,002,470
JBrowse link
G GCSH glycine cleavage system protein H IEA UniProt GO_REF:0000104 NCBI chr 6:7,171,186...7,184,732 JBrowse link
G GLDC glycine decarboxylase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:215,608,854...215,715,062
Ensembl chr 1:215,608,849...215,715,061
JBrowse link
histidine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMDHD1 amidohydrolase domain containing 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:87,551,887...87,569,271
Ensembl chr 5:87,553,022...87,569,305
JBrowse link
G FTCD formimidoyltransferase cyclodeaminase IC (PMID:2572277) BHF-UCL PMID:2572277
G HAL histidine ammonia-lyase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:87,522,483...87,547,489
Ensembl chr 5:87,522,522...87,547,491
JBrowse link
G HDC histidine decarboxylase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 1:121,505,677...121,525,416
Ensembl chr 1:121,505,742...121,525,255
JBrowse link
G UROC1 urocanate hydratase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:53,592,763...53,634,214
Ensembl chr 7:53,590,776...53,637,714
JBrowse link
histidine catabolic process to glutamate and formamide term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMDHD1 amidohydrolase domain containing 1 IEA UniProt GO_REF:0000041 NCBI chr 5:87,551,887...87,569,271
Ensembl chr 5:87,553,022...87,569,305
JBrowse link
G FTCD formimidoyltransferase cyclodeaminase IEA UniProt GO_REF:0000041
G HAL histidine ammonia-lyase IEA UniProt GO_REF:0000041 NCBI chr 5:87,522,483...87,547,489
Ensembl chr 5:87,522,522...87,547,491
JBrowse link
G UROC1 urocanate hydratase 1 IEA UniProt GO_REF:0000041 NCBI chr 7:53,592,763...53,634,214
Ensembl chr 7:53,590,776...53,637,714
JBrowse link
histidine catabolic process to glutamate and formate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMDHD1 amidohydrolase domain containing 1 IEA UniProt GO_REF:0000041 NCBI chr 5:87,551,887...87,569,271
Ensembl chr 5:87,553,022...87,569,305
JBrowse link
G FTCD formimidoyltransferase cyclodeaminase IEA UniProt GO_REF:0000041
G HAL histidine ammonia-lyase IEA UniProt GO_REF:0000041 NCBI chr 5:87,522,483...87,547,489
Ensembl chr 5:87,522,522...87,547,491
JBrowse link
G UROC1 urocanate hydratase 1 IEA UniProt GO_REF:0000041 NCBI chr 7:53,592,763...53,634,214
Ensembl chr 7:53,590,776...53,637,714
JBrowse link
homocysteine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BLMH bleomycin hydrolase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:46,342,502...46,393,642
Ensembl chr12:46,342,501...46,393,484
JBrowse link
G CBS cystathionine beta-synthase ISO (PMID:18776696), (PMID:24416422) UniProtKB PMID:18776696, PMID:24416422 NCBI chr13:206,205,942...206,231,363 JBrowse link
G MTRR 5-methyltetrahydrofolate-homocysteine methyltransferase reductase IEA Ensembl GO_REF:0000107 NCBI chr16:74,245,214...74,270,828
Ensembl chr16:74,245,224...74,270,802
JBrowse link
isoleucine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACADSB acyl-CoA dehydrogenase short/branched chain ISO (PMID:11013134) UniProt PMID:11013134 NCBI chr14:132,563,002...132,607,574
Ensembl chr14:132,563,309...132,626,841
JBrowse link
G ACAT1 acetyl-CoA acetyltransferase 1 IEA Ensembl GO_REF:0000107 NCBI chr 9:36,525,266...36,545,634
Ensembl chr 9:36,525,261...36,545,633
JBrowse link
G BCAT2 branched chain amino acid transaminase 2 IEA Ensembl GO_REF:0000107 NCBI chr 6:54,107,682...54,123,595
Ensembl chr 6:54,107,681...54,143,602
JBrowse link
G BCKDK branched chain keto acid dehydrogenase kinase ISO RGD PMID:27472223 RGD:39131293 NCBI chr 3:17,375,628...17,380,925
Ensembl chr 3:17,375,352...17,402,204
JBrowse link
G HSD17B10 hydroxysteroid 17-beta dehydrogenase 10 ISO (PMID:18996107), (PMID:19706438) UniProt PMID:18996107, PMID:19706438 NCBI chr  X:46,218,540...46,220,942
Ensembl chr  X:46,218,545...46,220,944
JBrowse link
L-alanine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGXT alanine--glyoxylate and serine--pyruvate aminotransferase IEA Ensembl GO_REF:0000107 NCBI chr15:139,720,648...139,730,737
Ensembl chr15:139,720,612...139,730,736
JBrowse link
G GPT glutamic--pyruvic transaminase IEA UniProt GO_REF:0000041 NCBI chr 4:297,747...302,498
Ensembl chr 4:297,748...320,056
JBrowse link
L-alanine catabolic process, by transamination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGXT2 alanine--glyoxylate aminotransferase 2 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr16:20,576,661...20,617,008
Ensembl chr16:20,576,660...20,617,017
JBrowse link
L-cysteine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGXT alanine--glyoxylate and serine--pyruvate aminotransferase IEA Ensembl GO_REF:0000107 NCBI chr15:139,720,648...139,730,737
Ensembl chr15:139,720,612...139,730,736
JBrowse link
G CBS cystathionine beta-synthase ISO (PMID:15520012) UniProtKB PMID:15520012 NCBI chr13:206,205,942...206,231,363 JBrowse link
G CDO1 cysteine dioxygenase type 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:119,927,768...119,940,690
Ensembl chr 2:119,892,691...119,940,665
JBrowse link
L-cysteine catabolic process to hypotaurine term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CSAD cysteine sulfinic acid decarboxylase ISO PMID:9635011 UniProt PMID:9635011 RGD:13800536 NCBI chr 5:18,379,340...18,410,446
Ensembl chr 5:18,379,340...18,410,212
JBrowse link
L-cysteine catabolic process to taurine term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CSAD cysteine sulfinic acid decarboxylase ISO PMID:9635011 UniProt PMID:9635011 RGD:13800536 NCBI chr 5:18,379,340...18,410,446
Ensembl chr 5:18,379,340...18,410,212
JBrowse link
L-kynurenine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KYNU kynureninase IEA UniProt GO_REF:0000041 NCBI chr15:8,847,335...8,982,951
Ensembl chr15:8,850,665...8,982,945
JBrowse link
L-lysine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AASS aminoadipate-semialdehyde synthase ISO (MGI:MGI:1350812|PMID:10567240) MGI PMID:10567240 MGI:MGI:1350812 NCBI chr18:24,938,366...25,039,197
Ensembl chr18:24,974,816...25,039,196
JBrowse link
L-lysine catabolic process to acetyl-CoA via L-pipecolate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC100515508 peroxisomal sarcosine oxidase IEA Ensembl GO_REF:0000107 NCBI chr12:45,306,327...45,319,938
Ensembl chr12:45,257,188...45,322,767
JBrowse link
G LOC110255229 peroxisomal sarcosine oxidase IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr12:45,256,806...45,270,755
Ensembl chr12:45,257,188...45,322,767
JBrowse link
L-lysine catabolic process to acetyl-CoA via saccharopine term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AASS aminoadipate-semialdehyde synthase IEA UniProt GO_REF:0000041 NCBI chr18:24,938,366...25,039,197
Ensembl chr18:24,974,816...25,039,196
JBrowse link
G DLST dihydrolipoamide S-succinyltransferase IEA UniProt GO_REF:0000041 NCBI chr 7:98,091,161...98,111,267
Ensembl chr 7:98,091,123...98,111,572
JBrowse link
L-phenylalanine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FAH fumarylacetoacetate hydrolase IEA
IBA
(PMID:21873635) UniProt
GO_Central
PMID:21873635 GO_REF:0000041 NCBI chr 7:49,047,833...49,087,790
Ensembl chr 7:49,047,983...49,105,598
JBrowse link
G GSTZ1 glutathione S-transferase zeta 1 IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000041 NCBI chr 7:100,392,217...100,404,025
Ensembl chr 7:100,392,271...100,408,423
JBrowse link
G HGD homogentisate 1,2-dioxygenase IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000041 NCBI chr13:139,660,315...139,710,402
Ensembl chr13:139,660,343...139,710,405
JBrowse link
G HPD 4-hydroxyphenylpyruvate dioxygenase IEA UniProt GO_REF:0000041 NCBI chr14:30,845,608...30,857,658
Ensembl chr14:30,845,613...30,857,667
JBrowse link
G PAH phenylalanine hydroxylase IEA UniProt GO_REF:0000041 NCBI chr 5:81,385,401...81,460,569
Ensembl chr 5:81,236,096...81,463,452
JBrowse link
G QDPR quinoid dihydropteridine reductase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:12,529,500...12,549,471
Ensembl chr 8:12,335,252...12,549,603
JBrowse link
G TAT tyrosine aminotransferase IEA UniProt GO_REF:0000041 NCBI chr 6:14,571,311...14,583,203
Ensembl chr 6:14,570,587...14,583,177
JBrowse link
L-serine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CBS cystathionine beta-synthase ISO (PMID:18776696) UniProtKB PMID:18776696 NCBI chr13:206,205,942...206,231,363 JBrowse link
G SDS serine dehydratase IEA Ensembl GO_REF:0000107 NCBI chr14:38,503,922...38,513,908
Ensembl chr14:38,503,930...38,513,880
JBrowse link
G SHMT1 serine hydroxymethyltransferase 1 IBA
IEA
(PMID:21873635) GO_Central
Ensembl
PMID:21873635 GO_REF:0000107 NCBI chr12:60,414,421...60,435,451
Ensembl chr12:60,414,446...60,435,450
JBrowse link
G SHMT2 serine hydroxymethyltransferase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:22,535,780...22,540,322
Ensembl chr 5:22,532,894...22,540,321
JBrowse link
L-threonine catabolic process to glycine term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TDH L-threonine 3-dehydrogenase IEA UniProt GO_REF:0000041 NCBI chr14:14,577,009...14,597,695 JBrowse link
leucine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCKDK branched chain keto acid dehydrogenase kinase ISO RGD PMID:27472223 RGD:39131293 NCBI chr 3:17,375,628...17,380,925
Ensembl chr 3:17,375,352...17,402,204
JBrowse link
G HMGCL 3-hydroxy-3-methylglutaryl-CoA lyase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:81,611,516...81,630,454
Ensembl chr 6:81,611,422...81,630,530
JBrowse link
G HMGCLL1 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:25,596,721...25,784,238
Ensembl chr 7:25,596,593...25,794,944
JBrowse link
G IVD isovaleryl-CoA dehydrogenase IEA UniProt GO_REF:0000041 NCBI chr 1:130,896,488...130,910,582
Ensembl chr 1:130,893,983...130,940,350
JBrowse link
G KNSTRN kinetochore localized astrin (SPAG5) binding protein IEA UniProt GO_REF:0000041 NCBI chr 1:130,916,956...130,930,172
Ensembl chr 1:130,893,983...130,940,350
JBrowse link
G MCCC2 methylcrotonoyl-CoA carboxylase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr16:47,917,308...47,996,540
Ensembl chr16:47,917,291...47,996,540
JBrowse link
methionine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MAT1A methionine adenosyltransferase 1A IEA Ensembl GO_REF:0000107 NCBI chr14:82,109,405...82,126,487
Ensembl chr14:82,109,404...82,127,049
JBrowse link
negative regulation of arginine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP2B4 ATPase plasma membrane Ca2+ transporting 4 IEA Ensembl GO_REF:0000107 NCBI chr 9:64,336,354...64,445,669
Ensembl chr 9:64,336,499...64,445,663
JBrowse link
ornithine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OTC ornithine carbamoyltransferase IEA Ensembl GO_REF:0000107 NCBI chr  X:34,322,398...34,391,711
Ensembl chr  X:34,322,298...34,391,837
JBrowse link
prenylcysteine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PCYOX1 prenylcysteine oxidase 1 IEA UniProt GO_REF:0000104 NCBI chr 3:72,207,406...72,223,605
Ensembl chr 3:72,204,815...72,223,581
JBrowse link
G PCYOX1L prenylcysteine oxidase 1 like IEA UniProt
InterPro
GO_REF:0000002, GO_REF:0000104 NCBI chr 2:150,526,002...150,539,393
Ensembl chr 2:150,526,174...150,537,517
JBrowse link
proline catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DAO D-amino acid oxidase IEA Ensembl GO_REF:0000107 NCBI chr14:41,931,549...41,950,628
Ensembl chr14:41,929,215...41,950,633
JBrowse link
G PRODH2 proline dehydrogenase 2 IEA InterPro GO_REF:0000002 NCBI chr 6:45,213,712...45,240,437 JBrowse link
proline catabolic process to glutamate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH4A1 aldehyde dehydrogenase 4 family member A1 IEA UniProt GO_REF:0000041 NCBI chr 6:77,373,999...77,404,015
Ensembl chr 6:77,373,999...77,393,651
JBrowse link
G LOC110256626 proline dehydrogenase 1, mitochondrial IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:51,624,919...51,644,467 JBrowse link
G PRODH2 proline dehydrogenase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:45,213,712...45,240,437 JBrowse link
S-adenosylhomocysteine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHCY adenosylhomocysteinase ISO (MGI:MGI:2183618|PMID:12023972) RGD
MGI
PMID:11741948, PMID:12023972 MGI:MGI:2183618, RGD:730275 NCBI chr17:37,726,084...37,744,378
Ensembl chr17:37,726,077...37,744,461
JBrowse link
selenocysteine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SCLY selenocysteine lyase ISO PMID:20164179 CAFA PMID:20164179 RGD:12793035 NCBI chr15:137,637,076...137,674,726
Ensembl chr15:137,637,071...137,674,736
JBrowse link
serine family amino acid catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G THNSL2 threonine synthase like 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 3:57,800,976...57,821,296
Ensembl chr 3:57,799,026...57,823,440
JBrowse link
threonine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GCAT glycine C-acetyltransferase IEA InterPro GO_REF:0000002 NCBI chr 5:10,027,133...10,038,494
Ensembl chr 5:10,011,009...10,038,433
JBrowse link
G LOC110255953 probable low-specificity L-threonine aldolase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:3,728,742...3,734,209 JBrowse link
G SDS serine dehydratase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:38,503,922...38,513,908
Ensembl chr14:38,503,930...38,513,880
JBrowse link
G SDSL serine dehydratase like IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:38,471,162...38,484,459
Ensembl chr14:38,471,165...38,484,155
JBrowse link
G TDH L-threonine 3-dehydrogenase ISS
IBA
(PMID:21873635) UniProt
GO_Central
PMID:21873635 GO_REF:0000024 NCBI chr14:14,577,009...14,597,695 JBrowse link
tryptophan catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACMSD aminocarboxymuconate semialdehyde decarboxylase ISO RGD PMID:11802786 RGD:70243 NCBI chr15:17,121,950...17,164,005
Ensembl chr15:17,106,724...17,163,899
JBrowse link
G HAAO 3-hydroxyanthranilate 3,4-dioxygenase IEA UniProt GO_REF:0000104 NCBI chr 3:97,580,756...97,595,033
Ensembl chr 3:97,580,851...97,595,021
JBrowse link
G KMO kynurenine 3-monooxygenase IEA UniProt GO_REF:0000104 NCBI chr10:12,442,877...12,489,417
Ensembl chr10:12,431,982...12,490,409
JBrowse link
G KYNU kynureninase IEA UniProt GO_REF:0000104 NCBI chr15:8,847,335...8,982,951
Ensembl chr15:8,850,665...8,982,945
JBrowse link
tryptophan catabolic process to acetyl-CoA term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KYNU kynureninase ISO RGD PMID:7236232 RGD:2303721 NCBI chr15:8,847,335...8,982,951
Ensembl chr15:8,850,665...8,982,945
JBrowse link
G TDO2 tryptophan 2,3-dioxygenase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:44,708,722...44,725,954
Ensembl chr 8:44,708,746...44,740,980
JBrowse link
tryptophan catabolic process to kynurenine term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AFMID arylformamidase IEA
IBA
(PMID:21873635) UniProt
GO_Central
PMID:21873635 GO_REF:0000041 NCBI chr12:3,759,688...3,785,829
Ensembl chr12:3,759,708...3,785,836
JBrowse link
G IDO1 indoleamine 2,3-dioxygenase 1 IBA
IEA
(PMID:21873635) GO_Central
InterPro
PMID:21873635 GO_REF:0000002 NCBI chr17:9,245,283...9,260,140
Ensembl chr17:9,245,196...9,260,491
JBrowse link
G IDO2 indoleamine 2,3-dioxygenase 2 IEA
IBA
(PMID:21873635) Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr17:9,277,039...9,344,405
Ensembl chr17:9,277,069...9,343,749
JBrowse link
G KYNU kynureninase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:8,847,335...8,982,951
Ensembl chr15:8,850,665...8,982,945
JBrowse link
G TDO2 tryptophan 2,3-dioxygenase IEA UniProt
InterPro
GO_REF:0000002, GO_REF:0000041 NCBI chr 8:44,708,722...44,725,954
Ensembl chr 8:44,708,746...44,740,980
JBrowse link
tyrosine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FAH fumarylacetoacetate hydrolase IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000104 NCBI chr 7:49,047,833...49,087,790
Ensembl chr 7:49,047,983...49,105,598
JBrowse link
G GSTZ1 glutathione S-transferase zeta 1 IEA UniProt GO_REF:0000043 NCBI chr 7:100,392,217...100,404,025
Ensembl chr 7:100,392,271...100,408,423
JBrowse link
G HPD 4-hydroxyphenylpyruvate dioxygenase ISS
IBA
(PMID:21873635) UniProt
GO_Central
PMID:21873635 GO_REF:0000024 NCBI chr14:30,845,608...30,857,658
Ensembl chr14:30,845,613...30,857,667
JBrowse link
G TAT tyrosine aminotransferase IEA Ensembl GO_REF:0000107 NCBI chr 6:14,571,311...14,583,203
Ensembl chr 6:14,570,587...14,583,177
JBrowse link
valine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH6A1 aldehyde dehydrogenase 6 family member A1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:97,360,583...97,381,885
Ensembl chr 7:97,357,952...97,381,841
JBrowse link
G BCKDK branched chain keto acid dehydrogenase kinase ISO RGD PMID:27472223 RGD:39131293 NCBI chr 3:17,375,628...17,380,925
Ensembl chr 3:17,375,352...17,402,204
JBrowse link
G ECHDC2 enoyl-CoA hydratase domain containing 2 IEA UniProt GO_REF:0000041 NCBI chr 6:159,326,146...159,347,178
Ensembl chr 6:159,326,150...159,349,471
JBrowse link
G HIBADH 3-hydroxyisobutyrate dehydrogenase IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000041 NCBI chr18:44,985,410...45,102,171
Ensembl chr18:44,985,425...45,208,347
JBrowse link
G HIBCH 3-hydroxyisobutyryl-CoA hydrolase IEA
IBA
(PMID:21873635) UniProt
GO_Central
PMID:21873635 GO_REF:0000041 NCBI chr15:94,795,744...94,941,362
Ensembl chr15:94,785,453...94,941,381
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16545
    metabolic process 10584
      primary metabolic process 9393
        cellular amino acid metabolic process 266
          cellular amino acid catabolic process 95
            alpha-amino acid catabolic process + 84
            amino acid catabolic process via Ehrlich pathway + 0
            anaerobic amino acid catabolic process + 0
            aromatic amino acid family catabolic process + 20
            beta-alanine catabolic process + 1
            branched-chain amino acid catabolic process + 19
            fructoselysine catabolic process 0
            gamma-aminobutyric acid catabolic process + 2
            sulfur amino acid catabolic process + 9
Path 2
Term Annotations click to browse term
  biological_process 16545
    metabolic process 10584
      small molecule metabolic process 1663
        organic acid metabolic process 954
          oxoacid metabolic process 930
            carboxylic acid metabolic process 878
              cellular amino acid metabolic process 266
                cellular amino acid catabolic process 95
                  alpha-amino acid catabolic process + 84
                  amino acid catabolic process via Ehrlich pathway + 0
                  anaerobic amino acid catabolic process + 0
                  aromatic amino acid family catabolic process + 20
                  beta-alanine catabolic process + 1
                  branched-chain amino acid catabolic process + 19
                  fructoselysine catabolic process 0
                  gamma-aminobutyric acid catabolic process + 2
                  sulfur amino acid catabolic process + 9
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.