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ONTOLOGY REPORT - ANNOTATIONS


Term:cellular amino acid catabolic process
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Accession:GO:0009063 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of amino acids, organic acids containing one or more amino substituents.
Synonyms:exact_synonym: amino acid catabolic process;   cellular amino acid breakdown;   cellular amino acid catabolism;   cellular amino acid degradation


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cellular amino acid catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCKDK branched chain keto acid dehydrogenase kinase NAS (PMID:2403034) UniProtKB PMID:2403034 NCBI chr16:31,108,381...31,117,651
Ensembl chr16:31,106,107...31,112,791
JBrowse link
G ENOSF1 enolase superfamily member 1 IEA InterPro GO_REF:0000002 NCBI chr18:670,318...712,660
Ensembl chr18:670,318...712,662
JBrowse link
G IL4I1 interleukin 4 induced 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr19:49,889,654...49,929,504
Ensembl chr19:49,889,654...49,929,539
JBrowse link
4-hydroxyproline catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH4A1 aldehyde dehydrogenase 4 family member A1 TAS (PMID:21998747) BHF-UCL PMID:21998747 NCBI chr 1:18,871,430...18,902,580
Ensembl chr 1:18,871,430...18,902,724
JBrowse link
G GOT2 glutamic-oxaloacetic transaminase 2 TAS (PMID:21998747) BHF-UCL PMID:21998747 NCBI chr16:58,707,131...58,734,316
Ensembl chr16:58,707,131...58,734,342
JBrowse link
G HOGA1 4-hydroxy-2-oxoglutarate aldolase 1 IDA (PMID:21998747) BHF-UCL PMID:21998747 NCBI chr10:97,584,389...97,612,802
Ensembl chr10:97,584,323...97,612,802
JBrowse link
G PRODH proline dehydrogenase 1 TAS (PMID:21998747) BHF-UCL PMID:21998747 NCBI chr22:18,912,781...18,936,553
Ensembl chr22:18,912,777...18,936,553
JBrowse link
arginine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARG1 arginase 1 TAS (PMID:3540966) PINC PMID:3540966 NCBI chr 6:131,573,226...131,584,329
Ensembl chr 6:131,470,832...131,584,332
JBrowse link
G DDAH1 dimethylarginine dimethylaminohydrolase 1 IEA
IDA
(PMID:24895913) InterPro
BHF-UCL
PMID:24895913 GO_REF:0000002 NCBI chr 1:85,318,485...85,578,274
Ensembl chr 1:85,318,481...85,578,363
JBrowse link
G DDAH2 dimethylarginine dimethylaminohydrolase 2 IEA InterPro GO_REF:0000002 NCBI chr 6:31,727,040...31,730,263
Ensembl chr 6:31,727,038...31,730,617
JBrowse link
G FAH fumarylacetoacetate hydrolase IEA Ensembl GO_REF:0000107 NCBI chr15:80,152,789...80,186,949
Ensembl chr15:80,152,490...80,186,946
JBrowse link
G NOS1 nitric oxide synthase 1 IC
IBA
(PMID:7545544)
(PMID:21873635)
BHF-UCL
GO_Central
PMID:7545544, PMID:21873635 NCBI chr12:117,208,142...117,361,626
Ensembl chr12:117,208,142...117,452,170
JBrowse link
G NOS2 nitric oxide synthase 2 IDA
IBA
(PMID:7504305)
(PMID:21873635)
BHF-UCL
GO_Central
PMID:7504305, PMID:21873635 NCBI chr17:27,756,766...27,800,529
Ensembl chr17:27,756,766...27,800,529
JBrowse link
G NOS3 nitric oxide synthase 3 IDA
IBA
(PMID:1378832), (PMID:7488039)
(PMID:21873635)
BHF-UCL
GO_Central
PMID:1378832, PMID:7488039, PMID:21873635 NCBI chr 7:150,991,017...151,014,588
Ensembl chr 7:150,991,017...151,014,588
JBrowse link
arginine catabolic process to glutamate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OAT ornithine aminotransferase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:124,397,303...124,418,923
Ensembl chr10:124,397,303...124,418,976
JBrowse link
arginine catabolic process to ornithine term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARG1 arginase 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:131,573,226...131,584,329
Ensembl chr 6:131,470,832...131,584,332
JBrowse link
G ARG2 arginase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr14:67,619,920...67,651,708
Ensembl chr14:67,619,920...67,651,708
JBrowse link
arginine catabolic process to proline via ornithine term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OAT ornithine aminotransferase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr10:124,397,303...124,418,923
Ensembl chr10:124,397,303...124,418,976
JBrowse link
asparagine catabolic process via L-aspartate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASRGL1 asparaginase and isoaspartyl peptidase 1 IDA
IBA
ISS
(PMID:19839645)
(PMID:21873635)
UniProtKB
GO_Central
PMID:19839645, PMID:21873635 GO_REF:0000024 NCBI chr11:62,337,430...62,401,401
Ensembl chr11:62,337,448...62,393,412
JBrowse link
aspartate catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASPA aspartoacylase TAS (PMID:8252036) PINC PMID:8252036 NCBI chr17:3,473,646...3,503,405
Ensembl chr17:3,472,374...3,503,405
JBrowse link
G DDO D-aspartate oxidase IDA
IBA
(PMID:9163533)
(PMID:21873635)
UniProtKB
GO_Central
PMID:9163533, PMID:21873635 NCBI chr 6:110,388,321...110,415,575
Ensembl chr 6:110,391,771...110,415,575
JBrowse link
G GOT1 glutamic-oxaloacetic transaminase 1 IDA (PMID:2241899) UniProtKB PMID:2241899 NCBI chr10:99,396,870...99,430,624
Ensembl chr10:99,396,870...99,430,624
JBrowse link
G GOT2 glutamic-oxaloacetic transaminase 2 IDA
IBA
(PMID:2567216)
(PMID:21873635)
UniProtKB
GO_Central
PMID:2567216, PMID:21873635 NCBI chr16:58,707,131...58,734,316
Ensembl chr16:58,707,131...58,734,342
JBrowse link
beta-alanine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH6A1 aldehyde dehydrogenase 6 family member A1 ISO RGD PMID:2768248 RGD:1599052 NCBI chr14:74,056,847...74,084,453
Ensembl chr14:74,056,847...74,084,492
JBrowse link
branched-chain amino acid catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC011462.1 novel protein IEA InterPro GO_REF:0000002 Ensembl chr19:41,350,853...41,425,001 JBrowse link
G ACAD8 acyl-CoA dehydrogenase family member 8 TAS Reactome Reactome:R-HSA-70895 NCBI chr11:134,253,538...134,265,858
Ensembl chr11:134,253,495...134,265,855
Ensembl chr11:134,253,495...134,265,855
JBrowse link
G ACADSB acyl-CoA dehydrogenase short/branched chain TAS Reactome Reactome:R-HSA-70895 NCBI chr10:123,009,006...123,058,290
Ensembl chr10:123,008,979...123,058,290
Ensembl chr10:123,008,979...123,058,290
JBrowse link
G ACAT1 acetyl-CoA acetyltransferase 1 TAS Reactome Reactome:R-HSA-70895 NCBI chr11:108,116,705...108,148,822
Ensembl chr11:108,116,695...108,147,603
JBrowse link
G ALDH6A1 aldehyde dehydrogenase 6 family member A1 TAS Reactome Reactome:R-HSA-70895 NCBI chr14:74,056,847...74,084,453
Ensembl chr14:74,056,847...74,084,492
JBrowse link
G AUH AU RNA binding methylglutaconyl-CoA hydratase TAS Reactome Reactome:R-HSA-70895 NCBI chr 9:91,213,823...91,361,945
Ensembl chr 9:91,213,815...91,361,913
Ensembl chr 9:91,213,815...91,361,913
JBrowse link
G BCAT1 branched chain amino acid transaminase 1 TAS Reactome Reactome:R-HSA-70895 NCBI chr12:24,810,024...24,949,101
Ensembl chr12:24,810,024...24,949,101
JBrowse link
G BCAT2 branched chain amino acid transaminase 2 TAS Reactome Reactome:R-HSA-70895 NCBI chr19:48,795,064...48,811,029
Ensembl chr19:48,795,062...48,811,029
JBrowse link
G BCKDHA branched chain keto acid dehydrogenase E1 subunit alpha IDA
TAS
IBA
IEA
(PMID:7883996)
(PMID:21873635)
HGNC
Reactome
GO_Central
InterPro
PMID:7883996, PMID:21873635 GO_REF:0000002, Reactome:R-HSA-70895 NCBI chr19:41,397,818...41,425,002
Ensembl chr19:41,397,808...41,425,002
JBrowse link
G BCKDHB branched chain keto acid dehydrogenase E1 subunit beta IMP
TAS
IBA
(PMID:2022752)
(PMID:21873635)
HGNC
Reactome
GO_Central
PMID:2022752, PMID:21873635 Reactome:R-HSA-70895 NCBI chr 6:80,106,610...80,469,088
Ensembl chr 6:80,106,647...80,346,270
JBrowse link
G BCKDK branched chain keto acid dehydrogenase kinase ISS
TAS
(PMID:11839747) HGNC PMID:11839747 GO_REF:0000024, Reactome:R-HSA-70895 NCBI chr16:31,108,381...31,117,651
Ensembl chr16:31,106,107...31,112,791
JBrowse link
G DBT dihydrolipoamide branched chain transacylase E2 TAS Reactome Reactome:R-HSA-70895 NCBI chr 1:100,186,919...100,249,864
Ensembl chr 1:100,186,919...100,249,834
JBrowse link
G DLD dihydrolipoamide dehydrogenase TAS Reactome Reactome:R-HSA-70895 NCBI chr 7:107,891,107...107,921,198
Ensembl chr 7:107,891,162...107,931,730
JBrowse link
G HIBADH 3-hydroxyisobutyrate dehydrogenase TAS Reactome Reactome:R-HSA-70895 NCBI chr 7:27,525,440...27,662,903
Ensembl chr 7:27,525,442...27,662,883
JBrowse link
G HIBCH 3-hydroxyisobutyryl-CoA hydrolase TAS Reactome Reactome:R-HSA-70895 NCBI chr 2:190,203,920...190,319,826
Ensembl chr 2:190,189,735...190,344,193
JBrowse link
G HSD17B10 hydroxysteroid 17-beta dehydrogenase 10 TAS Reactome Reactome:R-HSA-70895 NCBI chr  X:53,431,258...53,434,376
Ensembl chr  X:53,431,258...53,434,370
Ensembl chr  X:53,431,258...53,434,370
JBrowse link
G IVD isovaleryl-CoA dehydrogenase TAS
IDA
(PMID:7640268) Reactome
UniProt
PMID:7640268 Reactome:R-HSA-70895 NCBI chr15:40,405,787...40,435,948
Ensembl chr15:40,405,485...40,435,947
JBrowse link
G MCCC1 methylcrotonoyl-CoA carboxylase 1 TAS Reactome Reactome:R-HSA-70895 NCBI chr 3:183,015,218...183,099,587
Ensembl chr 3:183,015,218...183,116,075
JBrowse link
G MCCC2 methylcrotonoyl-CoA carboxylase 2 TAS Reactome Reactome:R-HSA-70895 NCBI chr 5:71,587,340...71,658,706
Ensembl chr 5:71,587,288...71,658,706
JBrowse link
G PPM1K protein phosphatase, Mg2+/Mn2+ dependent 1K TAS Reactome Reactome:R-HSA-70895 NCBI chr 4:88,257,617...88,284,670
Ensembl chr 4:88,257,620...88,284,769
JBrowse link
G SLC25A44 solute carrier family 25 member 44 IMP (PMID:31435015) UniProt PMID:31435015 NCBI chr 1:156,194,089...156,212,796
Ensembl chr 1:156,193,932...156,212,796
JBrowse link
D-alanine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DAO D-amino acid oxidase IDA
IBA
(PMID:16616139), (PMID:20603179)
(PMID:21873635)
UniProtKB
GO_Central
PMID:16616139, PMID:20603179, PMID:21873635 NCBI chr12:108,880,030...108,901,043
Ensembl chr12:108,858,932...108,901,043
JBrowse link
D-amino acid catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DAO D-amino acid oxidase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:108,880,030...108,901,043
Ensembl chr12:108,858,932...108,901,043
JBrowse link
G DDO D-aspartate oxidase IDA
IBA
(PMID:20603179)
(PMID:21873635)
UniProtKB
GO_Central
PMID:20603179, PMID:21873635 NCBI chr 6:110,388,321...110,415,575
Ensembl chr 6:110,391,771...110,415,575
JBrowse link
D-serine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DAO D-amino acid oxidase IDA
IBA
(PMID:18544534)
(PMID:21873635)
UniProtKB
GO_Central
PMID:18544534, PMID:21873635 NCBI chr12:108,880,030...108,901,043
Ensembl chr12:108,858,932...108,901,043
JBrowse link
gamma-aminobutyric acid catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABAT 4-aminobutyrate aminotransferase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr16:8,674,617...8,784,575
Ensembl chr16:8,674,596...8,784,575
JBrowse link
G ALDH5A1 aldehyde dehydrogenase 5 family member A1 IEA
IDA
IMP
(PMID:9683595)
(PMID:15037717)
UniProtKB PMID:9683595, PMID:15037717 GO_REF:0000041 NCBI chr 6:24,494,969...24,537,207
Ensembl chr 6:24,494,867...24,537,207
JBrowse link
glutamate catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GAD1 glutamate decarboxylase 1 TAS (PMID:10671565) UniProtKB PMID:10671565 NCBI chr 2:170,813,210...170,861,151
Ensembl chr 2:170,813,213...170,861,151
JBrowse link
G GLUD1 glutamate dehydrogenase 1 IDA
IBA
(PMID:11032875), (PMID:6121377)
(PMID:21873635)
UniProtKB
GO_Central
PMID:6121377, PMID:11032875, PMID:21873635 NCBI chr10:87,050,202...87,094,843
Ensembl chr10:87,050,202...87,094,843
JBrowse link
G GLUD2 glutamate dehydrogenase 2 IDA
IBA
(PMID:11032875)
(PMID:21873635)
BHF-UCL
GO_Central
PMID:11032875, PMID:21873635 NCBI chr  X:121,047,610...121,050,094
Ensembl chr  X:121,047,610...121,050,094
JBrowse link
G GLUL glutamate-ammonia ligase TAS (PMID:21757002) BHF-UCL PMID:21757002 NCBI chr 1:182,378,098...182,391,790
Ensembl chr 1:182,381,704...182,392,206
Ensembl chr 1:182,381,704...182,392,206
JBrowse link
glutamate catabolic process to 2-oxoglutarate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GOT1 glutamic-oxaloacetic transaminase 1 IEA Ensembl GO_REF:0000107 NCBI chr10:99,396,870...99,430,624
Ensembl chr10:99,396,870...99,430,624
JBrowse link
G GOT2 glutamic-oxaloacetic transaminase 2 IEA Ensembl GO_REF:0000107 NCBI chr16:58,707,131...58,734,316
Ensembl chr16:58,707,131...58,734,342
JBrowse link
glutamate catabolic process to aspartate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GOT1 glutamic-oxaloacetic transaminase 1 IEA Ensembl GO_REF:0000107 NCBI chr10:99,396,870...99,430,624
Ensembl chr10:99,396,870...99,430,624
JBrowse link
G GOT2 glutamic-oxaloacetic transaminase 2 IEA Ensembl GO_REF:0000107 NCBI chr16:58,707,131...58,734,316
Ensembl chr16:58,707,131...58,734,342
JBrowse link
glutamate catabolic process via 2-oxoglutarate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADHFE1 alcohol dehydrogenase iron containing 1 IDA (PMID:16435184) UniProtKB PMID:16435184 NCBI chr 8:66,432,504...66,468,907
Ensembl chr 8:66,432,492...66,468,907
JBrowse link
glutamate decarboxylation to succinate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GAD1 glutamate decarboxylase 1 TAS (PMID:1549570) PINC PMID:1549570 NCBI chr 2:170,813,210...170,861,151
Ensembl chr 2:170,813,213...170,861,151
JBrowse link
G GAD2 glutamate decarboxylase 2 IEA Ensembl GO_REF:0000107 NCBI chr10:26,216,372...26,304,558
Ensembl chr10:26,216,665...26,304,558
JBrowse link
glutamine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GLS glutaminase NAS
IBA
IDA
(PMID:10719215)
(PMID:21873635)
(PMID:22049910)
UniProtKB
GO_Central
PMID:10719215, PMID:21873635, PMID:22049910 NCBI chr 2:190,880,821...190,965,552
Ensembl chr 2:190,880,821...190,965,552
Ensembl chr 2:190,880,821...190,965,552
JBrowse link
G GLS2 glutaminase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:56,470,952...56,488,161
Ensembl chr12:56,470,944...56,488,414
JBrowse link
G PPAT phosphoribosyl pyrophosphate amidotransferase IEA Ensembl GO_REF:0000107 NCBI chr 4:56,393,362...56,435,615
Ensembl chr 4:56,393,362...56,435,615
JBrowse link
glycine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC104452.1 novel protein IEA InterPro GO_REF:0000002 Ensembl chr 3:49,416,777...49,429,314 JBrowse link
G AMT aminomethyltransferase IEA
TAS
(PMID:9600239) InterPro
PINC
PMID:9600239 GO_REF:0000002 NCBI chr 3:49,416,778...49,422,473
Ensembl chr 3:49,416,778...49,422,685
Ensembl chr 3:49,416,778...49,422,685
JBrowse link
G GCSH glycine cleavage system protein H TAS (PMID:1671321) PINC PMID:1671321 NCBI chr16:81,081,945...81,096,395
Ensembl chr16:81,081,945...81,096,395
Ensembl chr16:81,081,945...81,096,395
JBrowse link
G GLDC glycine decarboxylase IEA
IDA
(PMID:28244183) InterPro
UniProtKB
PMID:28244183 GO_REF:0000002 NCBI chr 9:6,532,467...6,645,729
Ensembl chr 9:6,532,464...6,645,783
Ensembl chr 9:6,532,464...6,645,783
JBrowse link
glycine decarboxylation via glycine cleavage system term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC092718.3 novel protein IEA UniProt GO_REF:0000104 Ensembl chr16:81,053,587...81,096,296 JBrowse link
G AC092718.8 novel protein IEA UniProt
InterPro
GO_REF:0000002, GO_REF:0000104 Ensembl chr16:81,022,316...81,096,284 JBrowse link
G AMT aminomethyltransferase IMP
IBA
(PMID:16051266)
(PMID:21873635)
UniProtKB
GO_Central
PMID:16051266, PMID:21873635 NCBI chr 3:49,416,778...49,422,473
Ensembl chr 3:49,416,778...49,422,685
Ensembl chr 3:49,416,778...49,422,685
JBrowse link
G GCSH glycine cleavage system protein H IEA InterPro
UniProtKB
GO_REF:0000002, GO_REF:0000104 NCBI chr16:81,081,945...81,096,395
Ensembl chr16:81,081,945...81,096,395
Ensembl chr16:81,081,945...81,096,395
JBrowse link
G GLDC glycine decarboxylase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:6,532,467...6,645,729
Ensembl chr 9:6,532,464...6,645,783
Ensembl chr 9:6,532,464...6,645,783
JBrowse link
histidine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMDHD1 amidohydrolase domain containing 1 TAS
IBA
(PMID:21873635) Reactome
GO_Central
PMID:21873635 Reactome:R-HSA-70921 NCBI chr12:95,943,331...95,968,720
Ensembl chr12:95,943,331...95,968,720
JBrowse link
G CARNMT1 carnosine N-methyltransferase 1 TAS Reactome Reactome:R-HSA-70921 NCBI chr 9:74,980,790...75,028,456
Ensembl chr 9:74,980,790...75,028,423
JBrowse link
G CARNS1 carnosine synthase 1 TAS Reactome Reactome:R-HSA-70921 NCBI chr11:67,415,678...67,425,607
Ensembl chr11:67,414,968...67,425,607
JBrowse link
G FTCD formimidoyltransferase cyclodeaminase TAS Reactome Reactome:R-HSA-70921 NCBI chr21:46,135,981...46,156,482
Ensembl chr21:46,136,262...46,155,579
JBrowse link
G HAL histidine ammonia-lyase TAS
IBA
(PMID:21873635) Reactome
GO_Central
PMID:21873635 Reactome:R-HSA-70921 NCBI chr12:95,972,662...95,996,344
Ensembl chr12:95,972,662...95,996,365
JBrowse link
G HDC histidine decarboxylase IDA
IBA
(PMID:22767596)
(PMID:21873635)
UniProtKB
GO_Central
PMID:21873635, PMID:22767596 NCBI chr15:50,241,945...50,266,049
Ensembl chr15:50,241,947...50,265,965
JBrowse link
G HNMT histamine N-methyltransferase TAS Reactome Reactome:R-HSA-70921 NCBI chr 2:137,964,068...138,016,364
Ensembl chr 2:137,964,020...138,016,364
JBrowse link
G UROC1 urocanate hydratase 1 IMP
IBA
TAS
(PMID:19304569)
(PMID:21873635)
BHF-UCL
GO_Central
Reactome
PMID:19304569, PMID:21873635 Reactome:R-HSA-70921 NCBI chr 3:126,481,166...126,517,773
Ensembl chr 3:126,481,166...126,517,773
JBrowse link
histidine catabolic process to glutamate and formamide term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMDHD1 amidohydrolase domain containing 1 IEA UniProtKB GO_REF:0000041 NCBI chr12:95,943,331...95,968,720
Ensembl chr12:95,943,331...95,968,720
JBrowse link
G FTCD formimidoyltransferase cyclodeaminase IEA UniProtKB GO_REF:0000041 NCBI chr21:46,135,981...46,156,482
Ensembl chr21:46,136,262...46,155,579
JBrowse link
G HAL histidine ammonia-lyase IEA UniProtKB GO_REF:0000041 NCBI chr12:95,972,662...95,996,344
Ensembl chr12:95,972,662...95,996,365
JBrowse link
G UROC1 urocanate hydratase 1 IEA UniProtKB GO_REF:0000041 NCBI chr 3:126,481,166...126,517,773
Ensembl chr 3:126,481,166...126,517,773
JBrowse link
histidine catabolic process to glutamate and formate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMDHD1 amidohydrolase domain containing 1 IEA UniProtKB GO_REF:0000041 NCBI chr12:95,943,331...95,968,720
Ensembl chr12:95,943,331...95,968,720
JBrowse link
G FTCD formimidoyltransferase cyclodeaminase IEA UniProtKB GO_REF:0000041 NCBI chr21:46,135,981...46,156,482
Ensembl chr21:46,136,262...46,155,579
JBrowse link
G HAL histidine ammonia-lyase IEA UniProtKB GO_REF:0000041 NCBI chr12:95,972,662...95,996,344
Ensembl chr12:95,972,662...95,996,365
JBrowse link
G UROC1 urocanate hydratase 1 IEA UniProtKB GO_REF:0000041 NCBI chr 3:126,481,166...126,517,773
Ensembl chr 3:126,481,166...126,517,773
JBrowse link
homocysteine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BLMH bleomycin hydrolase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr17:30,248,203...30,291,944
Ensembl chr17:30,248,203...30,292,056
JBrowse link
G CBS cystathionine beta-synthase IDA (PMID:18776696), (PMID:24416422) UniProtKB PMID:18776696, PMID:24416422 NCBI chr21:43,053,190...43,076,873
Ensembl chr21:43,053,191...43,076,943
JBrowse link
G CBSL cystathionine beta-synthase like IDA (PMID:18776696), (PMID:24416422) UniProtKB PMID:18776696, PMID:24416422 NCBI chr21:6,444,868...6,468,621
Ensembl chr21:6,444,869...6,468,040
JBrowse link
G MTRR 5-methyltetrahydrofolate-homocysteine methyltransferase reductase IDA (PMID:11466310) BHF-UCL PMID:11466310 NCBI chr 5:7,851,186...7,901,124
Ensembl chr 5:7,851,186...7,906,025
JBrowse link
isoleucine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACADSB acyl-CoA dehydrogenase short/branched chain IMP (PMID:11013134) UniProt PMID:11013134 NCBI chr10:123,009,006...123,058,290
Ensembl chr10:123,008,979...123,058,290
Ensembl chr10:123,008,979...123,058,290
JBrowse link
G ACAT1 acetyl-CoA acetyltransferase 1 TAS
IMP
(PMID:17371050)
(PMID:1979337), (PMID:8103405)
BHF-UCL PMID:1979337, PMID:8103405, PMID:17371050 NCBI chr11:108,116,705...108,148,822
Ensembl chr11:108,116,695...108,147,603
JBrowse link
G BCAT2 branched chain amino acid transaminase 2 IEA Ensembl GO_REF:0000107 NCBI chr19:48,795,064...48,811,029
Ensembl chr19:48,795,062...48,811,029
JBrowse link
G BCKDK branched chain keto acid dehydrogenase kinase ISO RGD PMID:27472223 RGD:39131293 NCBI chr16:31,108,381...31,117,651
Ensembl chr16:31,106,107...31,112,791
JBrowse link
G HSD17B10 hydroxysteroid 17-beta dehydrogenase 10 IDA (PMID:18996107), (PMID:19706438) UniProt PMID:18996107, PMID:19706438 NCBI chr  X:53,431,258...53,434,376
Ensembl chr  X:53,431,258...53,434,370
Ensembl chr  X:53,431,258...53,434,370
JBrowse link
L-alanine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGXT alanine--glyoxylate and serine--pyruvate aminotransferase IDA (PMID:17696873), (PMID:18492492), (PMID:22198249) UniProtKB PMID:17696873, PMID:18492492, PMID:22198249 NCBI chr 2:240,868,824...240,880,500
Ensembl chr 2:240,868,824...240,880,502
JBrowse link
G GPT glutamic--pyruvic transaminase IEA UniProtKB GO_REF:0000041 NCBI chr 8:144,503,068...144,507,172
Ensembl chr 8:144,502,973...144,507,174
JBrowse link
G GPT2 glutamic--pyruvic transaminase 2 IEA UniProtKB GO_REF:0000041 NCBI chr16:46,884,362...46,931,289
Ensembl chr16:46,884,362...46,931,289
JBrowse link
L-alanine catabolic process, by transamination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGXT2 alanine--glyoxylate aminotransferase 2 IDA
IBA
(PMID:20018850)
(PMID:21873635)
BHF-UCL
GO_Central
PMID:20018850, PMID:21873635 NCBI chr 5:34,998,099...35,048,188
Ensembl chr 5:34,998,101...35,048,135
JBrowse link
L-cysteine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGXT alanine--glyoxylate and serine--pyruvate aminotransferase IDA (PMID:18492492) UniProtKB PMID:18492492 NCBI chr 2:240,868,824...240,880,500
Ensembl chr 2:240,868,824...240,880,502
JBrowse link
G CBS cystathionine beta-synthase IDA (PMID:15520012) UniProtKB PMID:15520012 NCBI chr21:43,053,190...43,076,873
Ensembl chr21:43,053,191...43,076,943
JBrowse link
G CBSL cystathionine beta-synthase like IDA (PMID:15520012) UniProtKB PMID:15520012 NCBI chr21:6,444,868...6,468,621
Ensembl chr21:6,444,869...6,468,040
JBrowse link
G CDO1 cysteine dioxygenase type 1 TAS
IBA
(PMID:21873635) Reactome
GO_Central
PMID:21873635 Reactome:R-HSA-1614645 NCBI chr 5:115,804,733...115,816,659
Ensembl chr 5:115,804,733...115,816,659
JBrowse link
L-cysteine catabolic process to hypotaurine term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CSAD cysteine sulfinic acid decarboxylase ISS UniProt GO_REF:0000024 NCBI chr12:53,157,663...53,181,663
Ensembl chr12:53,157,663...53,180,909
JBrowse link
L-cysteine catabolic process to taurine term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CSAD cysteine sulfinic acid decarboxylase ISS UniProt GO_REF:0000024 NCBI chr12:53,157,663...53,181,663
Ensembl chr12:53,157,663...53,180,909
JBrowse link
L-kynurenine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH8A1 aldehyde dehydrogenase 8 family member A1 IEA UniProt GO_REF:0000041 NCBI chr 6:134,917,393...134,950,101
Ensembl chr 6:134,917,393...134,950,115
JBrowse link
G KYAT1 kynurenine aminotransferase 1 IEA UniProtKB GO_REF:0000041 NCBI chr 9:128,832,942...128,882,523
Ensembl chr 9:128,819,663...128,881,931
Ensembl chr 9:128,819,663...128,881,931
JBrowse link
G KYNU kynureninase IEA UniProtKB GO_REF:0000041 NCBI chr 2:142,877,664...143,055,833
Ensembl chr 2:142,877,657...143,055,833
JBrowse link
L-lysine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AASS aminoadipate-semialdehyde synthase ISO (MGI:MGI:1350812|PMID:10567240) MGI PMID:10567240 MGI:MGI:1350812 NCBI chr 7:122,073,544...122,144,269
Ensembl chr 7:122,073,549...122,144,255
JBrowse link
L-lysine catabolic process to acetyl-CoA via L-pipecolate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PIPOX pipecolic acid and sarcosine oxidase IDA
IBA
(PMID:10642506)
(PMID:21873635)
UniProtKB
GO_Central
PMID:10642506, PMID:21873635 NCBI chr17:29,043,141...29,057,227
Ensembl chr17:28,950,513...29,057,216
JBrowse link
L-lysine catabolic process to acetyl-CoA via saccharopine term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AADAT aminoadipate aminotransferase IEA UniProtKB GO_REF:0000041 NCBI chr 4:170,060,222...170,091,699
Ensembl chr 4:170,060,222...170,091,699
JBrowse link
G AASS aminoadipate-semialdehyde synthase IEA UniProtKB GO_REF:0000041 NCBI chr 7:122,073,544...122,144,269
Ensembl chr 7:122,073,549...122,144,255
JBrowse link
G DLST dihydrolipoamide S-succinyltransferase IEA UniProtKB GO_REF:0000041 NCBI chr14:74,881,913...74,903,743
Ensembl chr14:74,881,891...74,903,743
JBrowse link
L-phenylalanine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASRGL1 asparaginase and isoaspartyl peptidase 1 TAS Reactome Reactome:R-HSA-71182 NCBI chr11:62,337,430...62,401,401
Ensembl chr11:62,337,448...62,393,412
JBrowse link
G FAH fumarylacetoacetate hydrolase TAS
IBA
IEA
(PMID:21873635) Reactome
GO_Central
UniProtKB
PMID:21873635 GO_REF:0000041, Reactome:R-HSA-71182 NCBI chr15:80,152,789...80,186,949
Ensembl chr15:80,152,490...80,186,946
JBrowse link
G GSTZ1 glutathione S-transferase zeta 1 TAS
IBA
IEA
(PMID:21873635) Reactome
GO_Central
UniProtKB
PMID:21873635 GO_REF:0000041, Reactome:R-HSA-71182 NCBI chr14:77,321,002...77,331,597
Ensembl chr14:77,320,996...77,331,597
JBrowse link
G HGD homogentisate 1,2-dioxygenase TAS
IBA
IEA
(PMID:21873635) Reactome
GO_Central
UniProtKB
PMID:21873635 GO_REF:0000041, Reactome:R-HSA-71182 NCBI chr 3:120,628,168...120,682,555
Ensembl chr 3:120,628,172...120,682,269
JBrowse link
G HPD 4-hydroxyphenylpyruvate dioxygenase TAS
IEA
Reactome
UniProtKB
GO_REF:0000041, Reactome:R-HSA-71182 NCBI chr12:121,839,527...121,888,611
Ensembl chr12:121,839,527...121,863,596
JBrowse link
G IL4I1 interleukin 4 induced 1 TAS Reactome Reactome:R-HSA-71182 NCBI chr19:49,889,654...49,929,504
Ensembl chr19:49,889,654...49,929,539
JBrowse link
G KYAT1 kynurenine aminotransferase 1 TAS Reactome Reactome:R-HSA-71182 NCBI chr 9:128,832,942...128,882,523
Ensembl chr 9:128,819,663...128,881,931
Ensembl chr 9:128,819,663...128,881,931
JBrowse link
G PAH phenylalanine hydroxylase TAS
IEA
Reactome
UniProtKB
GO_REF:0000041, Reactome:R-HSA-71182 NCBI chr12:102,836,889...102,958,441
Ensembl chr12:102,836,889...102,958,410
JBrowse link
G PCBD1 pterin-4 alpha-carbinolamine dehydratase 1 TAS Reactome Reactome:R-HSA-71182 NCBI chr10:70,882,280...70,888,565
Ensembl chr10:70,882,280...70,888,565
JBrowse link
G QDPR quinoid dihydropteridine reductase TAS
IBA
(PMID:21873635) Reactome
GO_Central
PMID:21873635 Reactome:R-HSA-71182 NCBI chr 4:17,486,395...17,512,090
Ensembl chr 4:17,460,261...17,512,206
JBrowse link
G TAT tyrosine aminotransferase TAS
IEA
Reactome
UniProtKB
GO_REF:0000041, Reactome:R-HSA-71182 NCBI chr16:71,565,660...71,577,092
Ensembl chr16:71,565,660...71,577,092
JBrowse link
L-serine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CBS cystathionine beta-synthase IDA (PMID:18776696) UniProtKB PMID:18776696 NCBI chr21:43,053,190...43,076,873
Ensembl chr21:43,053,191...43,076,943
JBrowse link
G CBSL cystathionine beta-synthase like IDA (PMID:18776696) UniProtKB PMID:18776696 NCBI chr21:6,444,868...6,468,621
Ensembl chr21:6,444,869...6,468,040
JBrowse link
G SDS serine dehydratase IDA (PMID:15689518), (PMID:18342636) UniProtKB PMID:15689518, PMID:18342636 NCBI chr12:113,392,445...113,403,887
Ensembl chr12:113,392,445...113,426,301
JBrowse link
G SHMT1 serine hydroxymethyltransferase 1 IDA
IBA
(PMID:17482557)
(PMID:21873635)
UniProtKB
GO_Central
PMID:17482557, PMID:21873635 NCBI chr17:18,327,873...18,363,560
Ensembl chr17:18,327,860...18,363,563
JBrowse link
G SHMT2 serine hydroxymethyltransferase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:57,229,685...57,234,935
Ensembl chr12:57,229,573...57,234,935
JBrowse link
L-threonine catabolic process to glycine term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GCAT glycine C-acetyltransferase IEA
TAS
UniProtKB
Reactome
GO_REF:0000041, Reactome:R-HSA-8849175 NCBI chr22:37,807,894...37,817,183
Ensembl chr22:37,807,905...37,817,176
JBrowse link
G RIDA reactive intermediate imine deaminase A homolog TAS Reactome Reactome:R-HSA-8849175 NCBI chr 8:98,102,344...98,117,171
Ensembl chr 8:98,102,344...98,117,171
JBrowse link
G SDS serine dehydratase TAS Reactome Reactome:R-HSA-8849175 NCBI chr12:113,392,445...113,403,887
Ensembl chr12:113,392,445...113,426,301
JBrowse link
G SDSL serine dehydratase like TAS Reactome Reactome:R-HSA-8849175 NCBI chr12:113,422,265...113,438,277
Ensembl chr12:113,422,380...113,438,276
JBrowse link
G TDH L-threonine dehydrogenase (pseudogene) TAS Reactome Reactome:R-HSA-8849175 NCBI chr 8:11,339,637...11,368,452
Ensembl chr 8:11,339,637...11,368,452
JBrowse link
leucine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AUH AU RNA binding methylglutaconyl-CoA hydratase IEA UniProtKB GO_REF:0000041 NCBI chr 9:91,213,823...91,361,945
Ensembl chr 9:91,213,815...91,361,913
Ensembl chr 9:91,213,815...91,361,913
JBrowse link
G BCKDK branched chain keto acid dehydrogenase kinase ISO RGD PMID:27472223 RGD:39131293 NCBI chr16:31,108,381...31,117,651
Ensembl chr16:31,106,107...31,112,791
JBrowse link
G HMGCL 3-hydroxy-3-methylglutaryl-CoA lyase TAS
IBA
NAS
(PMID:8027038)
(PMID:21873635)
(PMID:9200711)
BHF-UCL
GO_Central
UniProtKB
PMID:8027038, PMID:9200711, PMID:21873635 NCBI chr 1:23,801,885...23,825,429
Ensembl chr 1:23,801,885...23,838,620
JBrowse link
G HMGCLL1 3-hydroxymethyl-3-methylglutaryl-CoA lyase like 1 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 6:55,434,373...55,607,573
Ensembl chr 6:55,434,373...55,579,197
Ensembl chr 6:55,434,373...55,579,197
JBrowse link
G IVD isovaleryl-CoA dehydrogenase IEA
IDA
ISS
(PMID:7640268) UniProtKB
UniProt
BHF-UCL
PMID:7640268 GO_REF:0000024, GO_REF:0000041 NCBI chr15:40,405,787...40,435,948
Ensembl chr15:40,405,485...40,435,947
JBrowse link
G MCCC1 methylcrotonoyl-CoA carboxylase 1 IEA
ISS
NAS
(PMID:11170888) UniProtKB
ParkinsonsUK-UCL
PMID:11170888 GO_REF:0000041 NCBI chr 3:183,015,218...183,099,587
Ensembl chr 3:183,015,218...183,116,075
JBrowse link
G MCCC2 methylcrotonoyl-CoA carboxylase 2 IEA
IBA
TAS
(PMID:21873635)
(PMID:11170888)
UniProtKB
GO_Central
PMID:11170888, PMID:21873635 GO_REF:0000041 NCBI chr 5:71,587,340...71,658,706
Ensembl chr 5:71,587,288...71,658,706
JBrowse link
lysine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AADAT aminoadipate aminotransferase TAS Reactome Reactome:R-HSA-71064 NCBI chr 4:170,060,222...170,091,699
Ensembl chr 4:170,060,222...170,091,699
JBrowse link
G AASS aminoadipate-semialdehyde synthase TAS
NAS
(PMID:10775527) Reactome
UniProtKB
PMID:10775527 Reactome:R-HSA-71064 NCBI chr 7:122,073,544...122,144,269
Ensembl chr 7:122,073,549...122,144,255
JBrowse link
G ALDH7A1 aldehyde dehydrogenase 7 family member A1 TAS Reactome Reactome:R-HSA-71064 NCBI chr 5:126,541,841...126,595,219
Ensembl chr 5:126,531,200...126,595,362
JBrowse link
G CRYM crystallin mu TAS Reactome Reactome:R-HSA-71064 NCBI chr16:21,258,521...21,303,062
Ensembl chr16:21,238,874...21,303,083
JBrowse link
G DLD dihydrolipoamide dehydrogenase TAS Reactome Reactome:R-HSA-71064 NCBI chr 7:107,891,107...107,921,198
Ensembl chr 7:107,891,162...107,931,730
JBrowse link
G DLST dihydrolipoamide S-succinyltransferase TAS Reactome Reactome:R-HSA-71064 NCBI chr14:74,881,913...74,903,743
Ensembl chr14:74,881,891...74,903,743
JBrowse link
G GCDH glutaryl-CoA dehydrogenase TAS Reactome Reactome:R-HSA-71064 NCBI chr19:12,891,129...12,899,999
Ensembl chr19:12,891,160...12,914,207
JBrowse link
G HYKK hydroxylysine kinase TAS Reactome Reactome:R-HSA-71064 NCBI chr15:78,507,577...78,537,373
Ensembl chr15:78,507,564...78,537,372
JBrowse link
G OGDH oxoglutarate dehydrogenase TAS Reactome Reactome:R-HSA-71064 NCBI chr 7:44,606,572...44,709,066
Ensembl chr 7:44,606,572...44,709,066
JBrowse link
G PHYKPL 5-phosphohydroxy-L-lysine phospho-lyase TAS Reactome Reactome:R-HSA-71064 NCBI chr 5:178,207,144...178,232,822
Ensembl chr 5:178,208,471...178,232,802
JBrowse link
G PIPOX pipecolic acid and sarcosine oxidase TAS Reactome Reactome:R-HSA-71064 NCBI chr17:29,043,141...29,057,227
Ensembl chr17:28,950,513...29,057,216
JBrowse link
G SLC25A21 solute carrier family 25 member 21 TAS Reactome Reactome:R-HSA-71064 NCBI chr14:36,677,318...37,172,606
Ensembl chr14:36,677,921...37,172,606
JBrowse link
methionine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MAT1A methionine adenosyltransferase 1A IMP (PMID:10677294) UniProtKB PMID:10677294 NCBI chr10:80,271,820...80,289,658
Ensembl chr10:80,271,820...80,289,658
JBrowse link
negative regulation of arginine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP2B4 ATPase plasma membrane Ca2+ transporting 4 IDA (PMID:19278978) BHF-UCL PMID:19278978 NCBI chr 1:203,626,832...203,744,081
Ensembl chr 1:203,626,787...203,744,081
Ensembl chr 1:203,626,787...203,744,081
JBrowse link
ornithine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OTC ornithine carbamoyltransferase IDA (PMID:2556444), (PMID:8112735) BHF-UCL PMID:2556444, PMID:8112735 NCBI chr  X:38,352,528...38,421,446
Ensembl chr  X:38,352,586...38,421,446
JBrowse link
prenylcysteine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PCYOX1 prenylcysteine oxidase 1 IEA InterPro
Ensembl
GO_REF:0000002, GO_REF:0000107 NCBI chr 2:70,258,137...70,281,185
Ensembl chr 2:70,257,386...70,281,185
JBrowse link
G PCYOX1L prenylcysteine oxidase 1 like IEA InterPro GO_REF:0000002 NCBI chr 5:149,358,022...149,375,112
Ensembl chr 5:149,358,037...149,369,653
JBrowse link
proline catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH4A1 aldehyde dehydrogenase 4 family member A1 TAS Reactome Reactome:R-HSA-70688 NCBI chr 1:18,871,430...18,902,580
Ensembl chr 1:18,871,430...18,902,724
JBrowse link
G DAO D-amino acid oxidase IDA
IBA
(PMID:16616139)
(PMID:21873635)
UniProtKB
GO_Central
PMID:16616139, PMID:21873635 NCBI chr12:108,880,030...108,901,043
Ensembl chr12:108,858,932...108,901,043
JBrowse link
G PRODH proline dehydrogenase 1 IEA
TAS
InterPro
Reactome
GO_REF:0000002, Reactome:R-HSA-70688 NCBI chr22:18,912,781...18,936,553
Ensembl chr22:18,912,777...18,936,553
JBrowse link
G PRODH2 proline dehydrogenase 2 IEA
TAS
InterPro
Reactome
GO_REF:0000002, Reactome:R-HSA-70688 NCBI chr19:35,799,988...35,812,845
Ensembl chr19:35,799,988...35,813,299
JBrowse link
proline catabolic process to glutamate term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH4A1 aldehyde dehydrogenase 4 family member A1 IEA UniProtKB GO_REF:0000041 NCBI chr 1:18,871,430...18,902,580
Ensembl chr 1:18,871,430...18,902,724
JBrowse link
G PRODH proline dehydrogenase 1 IEA
IBA
(PMID:21873635) UniProtKB
GO_Central
PMID:21873635 GO_REF:0000041 NCBI chr22:18,912,781...18,936,553
Ensembl chr22:18,912,777...18,936,553
JBrowse link
G PRODH2 proline dehydrogenase 2 IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr19:35,799,988...35,812,845
Ensembl chr19:35,799,988...35,813,299
JBrowse link
S-adenosylhomocysteine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHCY adenosylhomocysteinase IEA Ensembl GO_REF:0000107 NCBI chr20:34,235,012...34,311,976
Ensembl chr20:34,280,268...34,311,802
JBrowse link
sarcosine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SARDH sarcosine dehydrogenase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 9:133,663,074...133,739,958
Ensembl chr 9:133,663,560...133,739,955
JBrowse link
selenocysteine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SCLY selenocysteine lyase IEA Ensembl GO_REF:0000107 NCBI chr 2:238,061,001...238,099,413
Ensembl chr 2:238,060,924...238,099,413
JBrowse link
serine family amino acid catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G THNSL2 threonine synthase like 2 ISS
IBA
(PMID:17034760)
(PMID:21873635)
BHF-UCL
GO_Central
PMID:17034760, PMID:21873635 NCBI chr 2:88,170,346...88,186,631
Ensembl chr 2:88,170,295...88,186,636
Ensembl chr 2:88,170,295...88,186,636
JBrowse link
sulfur amino acid catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADO 2-aminoethanethiol dioxygenase TAS Reactome Reactome:R-HSA-1614558 NCBI chr10:62,804,720...62,808,479
Ensembl chr10:62,804,720...62,808,479
JBrowse link
G CTH cystathionine gamma-lyase TAS Reactome Reactome:R-HSA-1614558 NCBI chr 1:70,411,268...70,441,949
Ensembl chr 1:70,411,218...70,439,851
JBrowse link
G GADL1 glutamate decarboxylase like 1 TAS Reactome Reactome:R-HSA-1614558 NCBI chr 3:30,726,009...30,894,661
Ensembl chr 3:30,726,200...30,894,765
JBrowse link
G MPST mercaptopyruvate sulfurtransferase TAS Reactome Reactome:R-HSA-1614558 NCBI chr22:37,019,742...37,029,815
Ensembl chr22:37,019,635...37,029,822
JBrowse link
G TST thiosulfate sulfurtransferase TAS Reactome Reactome:R-HSA-1614558 NCBI chr22:37,010,859...37,020,183
Ensembl chr22:37,010,859...37,020,183
JBrowse link
G TXN2 thioredoxin 2 TAS Reactome Reactome:R-HSA-1614558 NCBI chr22:36,467,036...36,481,672
Ensembl chr22:36,467,046...36,481,640
JBrowse link
threonine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SDS serine dehydratase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:113,392,445...113,403,887
Ensembl chr12:113,392,445...113,426,301
JBrowse link
G SDSL serine dehydratase like IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr12:113,422,265...113,438,277
Ensembl chr12:113,422,380...113,438,276
JBrowse link
G TDH L-threonine dehydrogenase (pseudogene) IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 8:11,339,637...11,368,452
Ensembl chr 8:11,339,637...11,368,452
JBrowse link
tryptophan catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AADAT aminoadipate aminotransferase TAS Reactome Reactome:R-HSA-71240 NCBI chr 4:170,060,222...170,091,699
Ensembl chr 4:170,060,222...170,091,699
JBrowse link
G ACMSD aminocarboxymuconate semialdehyde decarboxylase TAS (PMID:12140278), (PMID:19843166) ParkinsonsUK-UCL PMID:12140278, PMID:19843166 NCBI chr 2:134,838,319...134,902,906
Ensembl chr 2:134,838,616...134,902,034
JBrowse link
G HAAO 3-hydroxyanthranilate 3,4-dioxygenase TAS Reactome Reactome:R-HSA-71240 NCBI chr 2:42,767,087...42,801,002
Ensembl chr 2:42,767,089...42,792,593
JBrowse link
G IDO1 indoleamine 2,3-dioxygenase 1 TAS Reactome Reactome:R-HSA-71240 NCBI chr 8:39,913,891...39,928,790
Ensembl chr 8:39,902,275...39,928,790
JBrowse link
G IDO2 indoleamine 2,3-dioxygenase 2 TAS Reactome Reactome:R-HSA-71240 NCBI chr 8:39,934,955...40,016,391
Ensembl chr 8:39,934,614...40,016,391
JBrowse link
G KMO kynurenine 3-monooxygenase TAS Reactome Reactome:R-HSA-71240 NCBI chr 1:241,531,883...241,595,642
Ensembl chr 1:241,532,134...241,595,642
JBrowse link
G KYAT1 kynurenine aminotransferase 1 TAS Reactome Reactome:R-HSA-71240 NCBI chr 9:128,832,942...128,882,523
Ensembl chr 9:128,819,663...128,881,931
Ensembl chr 9:128,819,663...128,881,931
JBrowse link
G KYNU kynureninase IEA
IMP
TAS
(PMID:17334708) InterPro
UniProtKB
Reactome
PMID:17334708 GO_REF:0000002, Reactome:R-HSA-71240 NCBI chr 2:142,877,664...143,055,833
Ensembl chr 2:142,877,657...143,055,833
JBrowse link
G TDO2 tryptophan 2,3-dioxygenase TAS Reactome Reactome:R-HSA-71240 NCBI chr 4:155,903,696...155,920,406
Ensembl chr 4:155,854,738...155,920,406
JBrowse link
tryptophan catabolic process to acetyl-CoA term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KYNU kynureninase IEA Ensembl GO_REF:0000107 NCBI chr 2:142,877,664...143,055,833
Ensembl chr 2:142,877,657...143,055,833
JBrowse link
G TDO2 tryptophan 2,3-dioxygenase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 4:155,903,696...155,920,406
Ensembl chr 4:155,854,738...155,920,406
JBrowse link
tryptophan catabolic process to kynurenine term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AFMID arylformamidase IEA
IBA
(PMID:21873635) UniProtKB
GO_Central
PMID:21873635 GO_REF:0000041 NCBI chr17:78,185,102...78,207,702
Ensembl chr17:78,187,317...78,207,701
JBrowse link
G IDO1 indoleamine 2,3-dioxygenase 1 IEA
IBA
(PMID:21873635) InterPro
GO_Central
UniProtKB
PMID:21873635 GO_REF:0000002, GO_REF:0000041 NCBI chr 8:39,913,891...39,928,790
Ensembl chr 8:39,902,275...39,928,790
JBrowse link
G IDO2 indoleamine 2,3-dioxygenase 2 IEA
IBA
ISS
IDA
(PMID:21873635)
(PMID:17499941)
(PMID:17671174)
InterPro
GO_Central
UniProtKB
PMID:17499941, PMID:17671174, PMID:21873635 GO_REF:0000002, GO_REF:0000041 NCBI chr 8:39,934,955...40,016,391
Ensembl chr 8:39,934,614...40,016,391
JBrowse link
G KYNU kynureninase IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 2:142,877,664...143,055,833
Ensembl chr 2:142,877,657...143,055,833
JBrowse link
G TDO2 tryptophan 2,3-dioxygenase IEA
IDA
(PMID:27762317) InterPro
UniProtKB
PMID:27762317 GO_REF:0000002, GO_REF:0000041 NCBI chr 4:155,903,696...155,920,406
Ensembl chr 4:155,854,738...155,920,406
JBrowse link
tyrosine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FAH fumarylacetoacetate hydrolase IBA
IEA
(PMID:21873635) GO_Central
UniProt
PMID:21873635 GO_REF:0000104 NCBI chr15:80,152,789...80,186,949
Ensembl chr15:80,152,490...80,186,946
JBrowse link
G GSTZ1 glutathione S-transferase zeta 1 IEA UniProt GO_REF:0000043 NCBI chr14:77,321,002...77,331,597
Ensembl chr14:77,320,996...77,331,597
JBrowse link
G HGD homogentisate 1,2-dioxygenase IEA UniProt GO_REF:0000043 NCBI chr 3:120,628,168...120,682,555
Ensembl chr 3:120,628,172...120,682,269
JBrowse link
G HPD 4-hydroxyphenylpyruvate dioxygenase IEA
IBA
ISS
(PMID:21873635) Ensembl
GO_Central
UniProtKB
PMID:21873635 GO_REF:0000024, GO_REF:0000107 NCBI chr12:121,839,527...121,888,611
Ensembl chr12:121,839,527...121,863,596
JBrowse link
G TAT tyrosine aminotransferase IDA (PMID:7999802) UniProtKB PMID:7999802 NCBI chr16:71,565,660...71,577,092
Ensembl chr16:71,565,660...71,577,092
JBrowse link
valine catabolic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACAD8 acyl-CoA dehydrogenase family member 8 IEA UniProtKB GO_REF:0000041 NCBI chr11:134,253,538...134,265,858
Ensembl chr11:134,253,495...134,265,855
Ensembl chr11:134,253,495...134,265,855
JBrowse link
G ALDH6A1 aldehyde dehydrogenase 6 family member A1 IMP
IBA
(PMID:23835272)
(PMID:21873635)
BHF-UCL
GO_Central
PMID:21873635, PMID:23835272 NCBI chr14:74,056,847...74,084,453
Ensembl chr14:74,056,847...74,084,492
JBrowse link
G BCKDK branched chain keto acid dehydrogenase kinase ISO RGD PMID:27472223 RGD:39131293 NCBI chr16:31,108,381...31,117,651
Ensembl chr16:31,106,107...31,112,791
JBrowse link
G HIBADH 3-hydroxyisobutyrate dehydrogenase IEA
IBA
IDA
(PMID:21873635)
(PMID:16466957)
UniProtKB
GO_Central
PMID:16466957, PMID:21873635 GO_REF:0000041 NCBI chr 7:27,525,440...27,662,903
Ensembl chr 7:27,525,442...27,662,883
JBrowse link
G HIBCH 3-hydroxyisobutyryl-CoA hydrolase IEA
IBA
(PMID:21873635) UniProtKB
GO_Central
PMID:21873635 GO_REF:0000041 NCBI chr 2:190,203,920...190,319,826
Ensembl chr 2:190,189,735...190,344,193
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18670
    metabolic process 12302
      primary metabolic process 11032
        cellular amino acid metabolic process 364
          cellular amino acid catabolic process 129
            alpha-amino acid catabolic process + 111
            amino acid catabolic process via Ehrlich pathway + 0
            anaerobic amino acid catabolic process + 0
            aromatic amino acid family catabolic process + 28
            beta-alanine catabolic process + 1
            branched-chain amino acid catabolic process + 23
            fructoselysine catabolic process 0
            gamma-aminobutyric acid catabolic process + 2
            sulfur amino acid catabolic process + 16
Path 2
Term Annotations click to browse term
  biological_process 18670
    metabolic process 12302
      small molecule metabolic process 2146
        organic acid metabolic process 1270
          oxoacid metabolic process 1248
            carboxylic acid metabolic process 1154
              cellular amino acid metabolic process 364
                cellular amino acid catabolic process 129
                  alpha-amino acid catabolic process + 111
                  amino acid catabolic process via Ehrlich pathway + 0
                  anaerobic amino acid catabolic process + 0
                  aromatic amino acid family catabolic process + 28
                  beta-alanine catabolic process + 1
                  branched-chain amino acid catabolic process + 23
                  fructoselysine catabolic process 0
                  gamma-aminobutyric acid catabolic process + 2
                  sulfur amino acid catabolic process + 16
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.